Wall clock time and date at job start Sun Mar 7 2021 00:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86296 * 109.46972 * 2 1 4 4 C 1.50700 * 109.47292 * 239.99896 * 2 1 3 5 5 C 1.38406 * 119.82448 * 300.00463 * 4 2 1 6 6 C 1.37894 * 120.16790 * 180.02562 * 5 4 2 7 7 C 1.39834 * 119.82664 * 359.97438 * 6 5 4 8 8 C 1.47209 * 120.16791 * 179.97438 * 7 6 5 9 9 C 1.34805 * 119.99635 * 180.02562 * 8 7 6 10 10 C 1.46428 * 119.99991 * 180.02562 * 9 8 7 11 11 O 1.21702 * 119.99864 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00480 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00218 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84940 * 23.80944 * 13 12 10 15 15 C 1.53787 * 113.61073 * 155.00331 * 13 12 10 16 16 C 1.53784 * 87.07923 * 140.06858 * 15 13 12 17 17 H 1.09002 * 113.61478 * 89.11632 * 16 15 13 18 18 C 1.52994 * 113.61233 * 220.01769 * 16 15 13 19 19 N 1.46502 * 109.47057 * 185.00081 * 18 16 15 20 20 C 1.34431 * 126.82500 * 124.71371 * 19 18 16 21 21 N 1.30836 * 108.07479 * 179.89448 * 20 19 18 22 22 C 1.33238 * 109.83108 * 0.37829 * 21 20 19 23 23 N 1.30714 * 108.94636 * 359.76020 * 22 21 20 24 24 C 1.53779 * 87.08045 * 334.56667 * 16 15 13 25 25 C 1.39836 * 119.66076 * 0.25908 * 7 6 5 26 26 C 1.37889 * 119.82687 * 359.46731 * 25 7 6 27 27 H 0.96694 * 113.99995 * 300.00051 * 1 2 3 28 28 H 1.08994 * 109.46649 * 119.99804 * 2 1 3 29 29 H 1.48501 * 110.00159 * 299.99537 * 3 2 1 30 30 H 1.48505 * 110.00326 * 61.31823 * 3 2 1 31 31 H 1.08002 * 119.91442 * 359.96614 * 5 4 2 32 32 H 1.07999 * 120.07960 * 180.02562 * 6 5 4 33 33 H 1.07995 * 119.99704 * 0.02562 * 8 7 6 34 34 H 1.07999 * 120.00347 * 359.97438 * 9 8 7 35 35 H 0.97001 * 120.00074 * 0.02562 * 12 10 9 36 36 H 1.09004 * 113.61202 * 254.61611 * 15 13 12 37 37 H 1.08994 * 113.61447 * 25.52042 * 15 13 12 38 38 H 1.08994 * 109.47510 * 304.99618 * 18 16 15 39 39 H 1.09001 * 109.47575 * 65.00169 * 18 16 15 40 40 H 1.07997 * 125.95828 * 0.03253 * 20 19 18 41 41 H 1.08004 * 125.52656 * 179.73281 * 22 21 20 42 42 H 1.09006 * 113.61307 * 270.88660 * 24 16 15 43 43 H 1.08999 * 113.69146 * 139.99146 * 24 16 15 44 44 H 1.07997 * 120.08513 * 179.74204 * 25 7 6 45 45 H 1.08004 * 119.91884 * 180.28009 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.5948 -2.0355 -1.4459 6 6 2.0510 -2.6926 -2.5691 7 6 2.8553 -2.0165 -3.4918 8 6 3.3469 -2.7108 -4.6932 9 6 4.1224 -2.0558 -5.5802 10 6 4.6110 -2.7463 -6.7755 11 8 4.3174 -3.9115 -6.9678 12 7 5.3859 -2.0914 -7.6626 13 6 5.8752 -2.7824 -8.8582 14 1 5.2526 -3.6311 -9.1411 15 6 6.1965 -1.8370 -10.0278 16 6 7.4275 -2.7180 -10.2987 17 1 7.2293 -3.5491 -10.9755 18 6 8.6775 -1.9233 -10.6818 19 7 9.7563 -2.8497 -11.0341 20 6 10.4554 -2.8733 -12.1821 21 7 11.3279 -3.8453 -12.1062 22 6 11.2109 -4.4671 -10.9337 23 7 10.2616 -3.8936 -10.2419 24 6 7.3773 -3.1085 -8.8122 25 6 3.1950 -0.6792 -3.2645 26 6 2.7264 -0.0342 -2.1395 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5138 0.8900 29 1 1.5616 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 0.9740 -2.5565 -0.7320 32 1 1.7871 -3.7265 -2.7360 33 1 3.0863 -3.7449 -4.8638 34 1 4.3827 -1.0216 -5.4097 35 1 5.6204 -1.1627 -7.5091 36 1 5.4558 -1.8640 -10.8271 37 1 6.4455 -0.8233 -9.7142 38 1 8.4542 -1.2841 -11.5359 39 1 8.9889 -1.3069 -9.8384 40 1 10.3217 -2.2049 -13.0198 41 1 11.8041 -5.3088 -10.6078 42 1 7.9492 -2.4423 -8.1662 43 1 7.5900 -4.1616 -8.6286 44 1 3.8192 -0.1517 -3.9705 45 1 2.9841 1.0000 -1.9648 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:33 Heat of formation + Delta-G solvation = 99.859861 kcal Electronic energy + Delta-G solvation = -27002.243724 eV Core-core repulsion = 22989.661628 eV Total energy + Delta-G solvation = -4012.582096 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.95702 -41.24801 -40.55532 -39.54790 -37.87920 -35.45702 -35.17127 -33.97189 -32.22895 -32.13753 -31.34290 -29.09833 -27.21948 -26.71356 -24.99407 -24.01367 -23.47237 -22.84035 -22.33257 -21.75021 -21.06379 -20.14003 -18.66247 -18.54838 -18.33182 -17.43844 -17.29653 -16.77389 -16.58094 -16.29469 -16.00159 -15.94993 -15.70155 -15.46956 -15.25563 -14.97084 -14.75919 -14.48627 -14.36148 -14.06222 -13.86407 -13.67957 -13.56886 -13.43941 -13.16771 -13.02279 -12.85777 -12.33249 -12.20742 -12.05022 -11.90958 -11.75487 -11.40479 -11.34703 -11.05153 -10.95276 -10.77165 -10.54811 -10.50989 -10.07909 -9.98597 -9.23466 -4.93267 -0.55827 0.39030 0.72920 0.86925 1.29373 1.48551 1.60368 1.94610 2.03262 2.20318 2.21340 2.77212 3.32523 3.34884 3.45677 3.54948 3.56233 3.67721 3.75701 3.77746 3.83749 3.93571 3.95734 4.12177 4.14131 4.20883 4.24482 4.32433 4.35648 4.39751 4.54529 4.59074 4.72518 4.73254 4.81780 4.83420 4.96323 4.98845 5.05548 5.08631 5.15806 5.20192 5.36476 5.38193 5.47559 5.47951 5.57519 5.59270 5.88847 5.98005 6.55590 6.55697 7.15970 7.22607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.092 4.092 3 Si 0.769 3.231 4 C -0.076 4.076 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.083 4.083 8 C -0.022 4.022 9 C -0.207 4.207 10 C 0.540 3.460 11 O -0.597 6.597 12 N -0.699 5.699 13 C 0.112 3.888 14 H 0.085 0.915 15 C -0.112 4.112 16 C -0.112 4.112 17 H 0.082 0.918 18 C 0.135 3.865 19 N -0.379 5.379 20 C 0.256 3.744 21 N -0.586 5.586 22 C 0.183 3.817 23 N -0.345 5.345 24 C -0.135 4.135 25 C -0.093 4.093 26 C -0.123 4.123 27 H 0.395 0.605 28 H 0.095 0.905 29 H -0.295 1.295 30 H -0.289 1.289 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.167 0.833 35 H 0.421 0.579 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.260 0.740 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.161 0.839 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 9.196 0.569 9.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.200 4.200 3 Si 0.674 3.326 4 C -0.076 4.076 5 C -0.127 4.127 6 C -0.122 4.122 7 C -0.083 4.083 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.330 3.670 11 O -0.480 6.480 12 N -0.349 5.349 13 C 0.006 3.994 14 H 0.103 0.897 15 C -0.150 4.150 16 C -0.132 4.132 17 H 0.100 0.900 18 C 0.015 3.985 19 N -0.169 5.169 20 C -0.040 4.040 21 N -0.314 5.314 22 C -0.120 4.120 23 N -0.173 5.173 24 C -0.174 4.174 25 C -0.110 4.110 26 C -0.141 4.141 27 H 0.246 0.754 28 H 0.113 0.887 29 H -0.223 1.223 30 H -0.216 1.216 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.185 0.815 35 H 0.259 0.741 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.120 0.880 40 H 0.276 0.724 41 H 0.245 0.755 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.179 0.821 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.139 8.672 0.368 8.754 hybrid contribution -1.310 -0.401 0.654 1.518 sum -0.170 8.271 1.022 8.336 Atomic orbital electron populations 1.86543 1.18559 1.80768 1.51069 1.25125 0.84091 1.12221 0.98604 0.94145 0.90220 0.71786 0.76485 1.19719 0.97623 0.94391 0.95845 1.21079 0.99278 0.94441 0.97884 1.21613 0.96394 1.00610 0.93607 1.19119 0.99625 0.94672 0.94859 1.22348 0.91827 0.99125 0.90909 1.23032 1.02793 1.02374 0.94517 1.18840 0.77906 0.85975 0.84236 1.90818 1.60182 1.19091 1.77918 1.45719 1.50783 1.16174 1.22231 1.22483 0.94223 0.97039 0.85635 0.89675 1.23298 0.95922 0.99103 0.96686 1.22495 0.94770 0.99319 0.96596 0.89993 1.22225 0.82149 0.88966 1.05184 1.50785 1.28933 1.24786 1.12444 1.26921 0.88389 0.96737 0.91954 1.70539 1.26810 1.11443 1.22637 1.26429 0.95922 1.00731 0.88917 1.78016 1.15819 1.03373 1.20091 1.23431 0.95900 1.01340 0.96728 1.21642 0.98806 0.93194 0.97406 1.21146 0.98447 1.00369 0.94104 0.75437 0.88717 1.22283 1.21628 0.85304 0.84577 0.86233 0.81537 0.74117 0.89272 0.85900 0.83740 0.88020 0.72445 0.75524 0.88697 0.93980 0.82115 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.97 12.74 -148.98 -1.90 -2.87 16 2 C -0.09 0.13 2.81 71.24 0.20 0.33 16 3 Si 0.77 -2.75 29.77 68.60 2.04 -0.71 16 4 C -0.08 -0.09 5.43 -19.79 -0.11 -0.20 16 5 C -0.11 -0.28 9.59 22.23 0.21 -0.07 16 6 C -0.10 -0.22 9.80 22.57 0.22 0.00 16 7 C -0.08 -0.09 5.87 -20.15 -0.12 -0.20 16 8 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 9 C -0.21 0.23 9.41 23.62 0.22 0.45 16 10 C 0.54 2.38 7.74 86.38 0.67 3.05 16 11 O -0.60 -8.90 15.83 -4.35 -0.07 -8.97 16 12 N -0.70 2.09 5.35 -444.25 -2.38 -0.29 16 13 C 0.11 -0.18 4.24 45.52 0.19 0.01 16 14 H 0.09 0.43 7.46 -2.39 -0.02 0.42 16 15 C -0.11 1.09 7.39 31.12 0.23 1.32 16 16 C -0.11 0.67 3.85 -10.27 -0.04 0.63 16 17 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 18 C 0.14 -1.23 6.39 86.38 0.55 -0.68 16 19 N -0.38 0.32 3.69 -352.07 -1.30 -0.98 16 20 C 0.26 -0.38 12.63 180.36 2.28 1.90 16 21 N -0.59 -3.55 11.19 -204.00 -2.28 -5.83 16 22 C 0.18 1.07 13.03 180.77 2.36 3.42 16 23 N -0.34 -2.15 12.57 -61.24 -0.77 -2.92 16 24 C -0.14 0.14 7.43 31.12 0.23 0.37 16 25 C -0.09 0.23 9.41 22.57 0.21 0.44 16 26 C -0.12 0.20 8.65 22.23 0.19 0.39 16 27 H 0.40 -2.46 8.74 -74.06 -0.65 -3.11 16 28 H 0.10 -0.48 7.96 -2.39 -0.02 -0.49 16 29 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 30 H -0.29 -0.29 7.11 99.48 0.71 0.41 16 31 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 32 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 33 H 0.12 0.62 7.52 -2.91 -0.02 0.60 16 34 H 0.17 -1.54 6.07 -2.91 -0.02 -1.56 16 35 H 0.42 -4.56 8.71 -92.71 -0.81 -5.37 16 36 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.12 -1.90 8.08 -2.39 -0.02 -1.92 16 38 H 0.14 -2.43 8.09 -2.39 -0.02 -2.45 16 39 H 0.10 -1.08 7.84 -2.39 -0.02 -1.09 16 40 H 0.26 -3.12 8.06 -2.91 -0.02 -3.15 16 41 H 0.23 0.13 8.06 -2.91 -0.02 0.10 16 42 H 0.09 -0.26 7.90 -2.38 -0.02 -0.28 16 43 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.16 -1.47 6.17 -2.91 -0.02 -1.49 16 45 H 0.15 -0.91 4.85 -2.91 -0.01 -0.93 16 Total: 0.00 -33.18 384.53 0.70 -32.49 By element: Atomic # 1 Polarization: -20.88 SS G_CDS: -0.38 Total: -21.26 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 7.73 Total: 11.34 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: -6.73 Total: -10.02 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.97 Total: -11.84 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.04 Total: -0.71 kcal Total: -33.18 0.70 -32.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.347 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds