Wall clock time and date at job start Sun Mar 7 2021 00:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35662 * 116.99498 * 2 1 4 4 C 1.40137 * 120.14815 * 180.02562 * 3 2 1 5 5 C 1.47544 * 120.19317 * 359.95202 * 4 3 2 6 6 O 1.21586 * 119.99756 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00143 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00225 * 179.97438 * 7 5 4 9 9 H 1.09000 * 112.84537 * 336.19713 * 8 7 5 10 10 C 1.53952 * 113.66655 * 107.43799 * 8 7 5 11 11 C 1.53777 * 87.01651 * 139.93534 * 10 8 7 12 12 H 1.08994 * 113.61750 * 89.23287 * 11 10 8 13 13 C 1.53007 * 113.61391 * 220.04728 * 11 10 8 14 14 N 1.46504 * 109.47014 * 274.14150 * 13 11 10 15 15 C 1.34424 * 126.82251 * 125.02698 * 14 13 11 16 16 N 1.30835 * 108.07632 * 179.97438 * 15 14 13 17 17 C 1.33244 * 109.82681 * 359.97438 * 16 15 14 18 18 N 1.30712 * 108.94650 * 0.02562 * 17 16 15 19 19 C 1.53774 * 113.61363 * 204.99853 * 8 7 5 20 20 C 1.39706 * 119.61726 * 180.22986 * 4 3 2 21 21 C 1.37793 * 119.90397 * 359.51137 * 20 4 3 22 22 C 1.50701 * 119.84743 * 180.23365 * 21 20 4 23 23 O 1.42906 * 109.47097 * 65.23691 * 22 21 20 24 24 Si 1.86297 * 109.46999 * 185.23397 * 22 21 20 25 25 C 1.38544 * 120.30034 * 0.46701 * 21 20 4 26 26 C 1.38055 * 120.39278 * 359.78626 * 25 21 20 27 27 H 1.09008 * 109.46700 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47585 * 300.00079 * 1 2 3 29 29 H 1.08995 * 109.47385 * 60.00488 * 1 2 3 30 30 H 0.97003 * 119.99774 * 0.02562 * 7 5 4 31 31 H 1.09003 * 113.61209 * 25.41047 * 10 8 7 32 32 H 1.09000 * 113.67009 * 254.46427 * 10 8 7 33 33 H 1.08991 * 109.47297 * 154.13607 * 13 11 10 34 34 H 1.09000 * 109.46694 * 34.13250 * 13 11 10 35 35 H 1.08003 * 125.96766 * 0.02562 * 15 14 13 36 36 H 1.07994 * 125.52303 * 179.97438 * 17 16 15 37 37 H 1.09001 * 113.61416 * 105.47210 * 19 8 7 38 38 H 1.08998 * 113.69377 * 334.58119 * 19 8 7 39 39 H 1.08002 * 120.04695 * 179.72365 * 20 4 3 40 40 H 1.08998 * 109.47251 * 305.23375 * 22 21 20 41 41 H 0.96704 * 113.99851 * 180.02562 * 23 22 21 42 42 H 1.48506 * 110.00378 * 299.99797 * 24 22 21 43 43 H 1.48497 * 110.00325 * 61.31780 * 24 22 21 44 44 H 1.08004 * 119.80427 * 179.76210 * 25 21 20 45 45 H 1.07997 * 119.96062 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4440 1.2859 -0.0005 5 6 4.2550 0.0534 0.0000 6 8 3.7096 -1.0333 0.0013 7 7 5.6005 0.1320 0.0000 8 6 6.4058 -1.0918 0.0010 9 1 5.8707 -1.9502 0.4071 10 6 7.0986 -1.3768 -1.3440 11 6 8.3239 -1.8199 -0.5273 12 1 8.3152 -2.8781 -0.2662 13 6 9.6566 -1.3670 -1.1271 14 7 10.0998 -2.3434 -2.1255 15 6 10.4153 -2.0969 -3.4087 16 7 10.7625 -3.2286 -3.9660 17 6 10.6820 -4.2151 -3.0738 18 7 10.2802 -3.7226 -1.9317 19 6 7.8111 -0.9039 0.5963 20 6 4.0666 2.5366 0.0043 21 6 3.3034 3.6838 -0.0005 22 6 3.9764 5.0323 -0.0006 23 8 4.6985 5.2042 -1.2218 24 14 2.6881 6.3692 0.1525 25 6 1.9203 3.6034 -0.0005 26 6 1.2922 2.3740 -0.0001 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 6.0356 0.9990 0.0000 31 1 7.2730 -0.4832 -1.9433 32 1 6.6367 -2.1847 -1.9115 33 1 10.4035 -1.2908 -0.3370 34 1 9.5294 -0.3942 -1.6020 35 1 10.3879 -1.1328 -3.8948 36 1 10.9108 -5.2532 -3.2640 37 1 7.9237 -1.3305 1.5930 38 1 8.1820 0.1189 0.5294 39 1 5.1445 2.6040 0.0085 40 1 4.6661 5.0942 0.8412 41 1 5.1581 6.0522 -1.2908 42 1 1.7414 6.2957 -0.9894 43 1 1.9514 6.2205 1.4332 44 1 1.3300 4.5078 -0.0005 45 1 0.2137 2.3194 0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:40 Heat of formation + Delta-G solvation = 54.032108 kcal Electronic energy + Delta-G solvation = -29479.409127 eV Core-core repulsion = 25274.383739 eV Total energy + Delta-G solvation = -4205.025388 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.97938 -41.93290 -40.82752 -39.35958 -39.16178 -37.16647 -35.49223 -34.20702 -32.62247 -32.15850 -32.01724 -29.11931 -28.59099 -26.77089 -26.14738 -25.79851 -24.21907 -22.94591 -22.82291 -22.02227 -21.61356 -20.55126 -19.53788 -18.45353 -18.40717 -18.15673 -17.78461 -17.17053 -16.97064 -16.61267 -16.41103 -16.16706 -16.06826 -15.85917 -15.73773 -15.46665 -15.07208 -14.91409 -14.63511 -14.41982 -14.16226 -13.93389 -13.68973 -13.65117 -13.48095 -13.22275 -12.99659 -12.71473 -12.55331 -12.39514 -12.35091 -12.18138 -11.92253 -11.87695 -11.55061 -11.04774 -10.95820 -10.78773 -10.51830 -10.40790 -10.25249 -10.06192 -9.41190 -4.91834 -0.43310 0.07937 0.71097 1.33487 1.46168 1.62387 1.68634 1.98476 2.01472 2.04123 2.13928 2.53670 3.31026 3.36551 3.40466 3.46630 3.48813 3.54112 3.54547 3.73393 3.78565 3.88618 3.92282 4.05373 4.14998 4.16306 4.18000 4.21606 4.25638 4.39264 4.45659 4.51766 4.56680 4.59995 4.67691 4.72782 4.77066 4.80018 4.91648 4.92873 5.01308 5.13469 5.19057 5.31732 5.40632 5.46158 5.52578 5.96509 6.15590 6.47176 6.98000 7.13878 7.16085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.169 3.831 4 C -0.192 4.192 5 C 0.558 3.442 6 O -0.567 6.567 7 N -0.700 5.700 8 C 0.116 3.884 9 H 0.084 0.916 10 C -0.143 4.143 11 C -0.114 4.114 12 H 0.080 0.920 13 C 0.136 3.864 14 N -0.377 5.377 15 C 0.257 3.743 16 N -0.586 5.586 17 C 0.185 3.815 18 N -0.351 5.351 19 C -0.113 4.113 20 C -0.008 4.008 21 C -0.134 4.134 22 C -0.065 4.065 23 O -0.561 6.561 24 Si 0.762 3.238 25 C -0.066 4.066 26 C -0.215 4.215 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.416 0.584 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.259 0.741 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.168 0.832 40 H 0.106 0.894 41 H 0.405 0.595 42 H -0.299 1.299 43 H -0.291 1.291 44 H 0.129 0.871 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 12.070 2.564 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.196 4.196 5 C 0.346 3.654 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.011 3.989 9 H 0.102 0.898 10 C -0.181 4.181 11 C -0.134 4.134 12 H 0.098 0.902 13 C 0.016 3.984 14 N -0.168 5.168 15 C -0.039 4.039 16 N -0.314 5.314 17 C -0.117 4.117 18 N -0.180 5.180 19 C -0.152 4.152 20 C -0.026 4.026 21 C -0.134 4.134 22 C -0.175 4.175 23 O -0.372 6.372 24 Si 0.669 3.331 25 C -0.083 4.083 26 C -0.233 4.233 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.255 0.745 31 H 0.128 0.872 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.275 0.725 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.186 0.814 40 H 0.123 0.877 41 H 0.257 0.743 42 H -0.227 1.227 43 H -0.218 1.218 44 H 0.146 0.854 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.408 10.288 2.926 10.788 hybrid contribution -0.639 -0.510 -0.058 0.820 sum 0.768 9.778 2.868 10.219 Atomic orbital electron populations 1.23447 0.76610 1.05637 1.02617 1.86342 1.23129 1.26086 1.86578 1.19387 0.91679 0.85215 0.91673 1.19521 0.90906 0.94477 1.14711 1.18245 0.83100 0.88223 0.75792 1.90818 1.72668 1.30394 1.50737 1.45699 1.04602 1.10331 1.74629 1.22466 0.90865 0.87817 0.97715 0.89760 1.23605 0.95901 1.01821 0.96805 1.22509 0.92852 1.00467 0.97548 0.90161 1.22226 0.95694 0.89675 0.90819 1.50744 1.49055 1.06033 1.10943 1.26888 0.93654 1.00684 0.82695 1.70542 1.26724 0.99437 1.34714 1.26433 0.97545 1.01516 0.86245 1.77951 1.25185 0.90239 1.24600 1.23309 0.91649 1.01956 0.98245 1.21214 1.01279 0.88461 0.91691 1.19536 0.92772 0.95642 1.05463 1.24587 1.03693 0.98226 0.91015 1.86443 1.69594 1.44284 1.36851 0.94373 0.77783 0.84898 0.76007 1.21118 0.94697 0.97214 0.95311 1.21355 1.01587 0.91055 1.09332 0.87002 0.91004 0.91214 0.74498 0.87158 0.93990 0.87839 0.83847 0.72502 0.75343 0.89814 0.85447 0.81439 0.87658 0.74332 1.22695 1.21789 0.85358 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 -3.49 8.57 -68.87 -0.59 -4.08 16 3 C 0.17 1.45 6.70 22.84 0.15 1.60 16 4 C -0.19 -1.26 5.89 -20.01 -0.12 -1.38 16 5 C 0.56 5.04 7.76 86.70 0.67 5.71 16 6 O -0.57 -10.64 14.76 16.93 0.25 -10.39 16 7 N -0.70 0.32 5.31 -442.93 -2.35 -2.03 16 8 C 0.12 -0.03 4.24 45.57 0.19 0.16 16 9 H 0.08 0.58 7.46 -2.39 -0.02 0.57 16 10 C -0.14 0.27 7.45 31.18 0.23 0.50 16 11 C -0.11 0.51 3.86 -10.27 -0.04 0.47 16 12 H 0.08 0.16 8.03 -2.39 -0.02 0.14 16 13 C 0.14 -1.09 6.37 86.38 0.55 -0.54 16 14 N -0.38 -0.10 3.69 -352.05 -1.30 -1.40 16 15 C 0.26 -0.11 12.63 180.36 2.28 2.16 16 16 N -0.59 -4.07 11.19 -204.00 -2.28 -6.35 16 17 C 0.19 1.23 13.03 180.76 2.36 3.59 16 18 N -0.35 -2.57 12.47 -61.25 -0.76 -3.33 16 19 C -0.11 0.91 7.39 31.12 0.23 1.14 16 20 C -0.01 0.00 9.16 22.52 0.21 0.21 16 21 C -0.13 -0.07 5.38 -19.90 -0.11 -0.18 16 22 C -0.06 0.39 2.78 71.24 0.20 0.59 16 23 O -0.56 3.59 12.81 -148.98 -1.91 1.68 16 24 Si 0.76 -4.25 29.83 68.60 2.05 -2.21 16 25 C -0.07 -0.19 8.65 22.30 0.19 0.01 16 26 C -0.21 -0.87 9.03 22.34 0.20 -0.67 16 27 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H 0.07 -0.12 7.66 -2.39 -0.02 -0.14 16 29 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 30 H 0.42 -3.39 6.76 -92.71 -0.63 -4.02 16 31 H 0.11 -0.72 7.92 -2.39 -0.02 -0.74 16 32 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H 0.14 -2.29 7.82 -2.39 -0.02 -2.31 16 35 H 0.26 -2.85 8.06 -2.91 -0.02 -2.87 16 36 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 37 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.13 -1.88 8.08 -2.39 -0.02 -1.90 16 39 H 0.17 -1.29 6.40 -2.91 -0.02 -1.30 16 40 H 0.11 -1.21 7.96 -2.39 -0.02 -1.23 16 41 H 0.41 -6.71 8.74 -74.05 -0.65 -7.36 16 42 H -0.30 -0.72 7.04 99.48 0.70 -0.02 16 43 H -0.29 -0.10 7.11 99.48 0.71 0.60 16 44 H 0.13 0.17 4.84 -2.91 -0.01 0.15 16 45 H 0.16 -0.08 6.30 -2.91 -0.02 -0.10 16 Total: 0.00 -36.72 377.25 1.22 -35.50 By element: Atomic # 1 Polarization: -21.70 SS G_CDS: -0.19 Total: -21.89 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 8.31 Total: 14.50 kcal Atomic # 7 Polarization: -6.42 SS G_CDS: -6.70 Total: -13.12 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -2.25 Total: -12.79 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.05 Total: -2.21 kcal Total: -36.72 1.22 -35.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.528 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds