Wall clock time and date at job start Sun Mar 7 2021 00:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.37816 * 119.93926 * 254.72490 * 4 2 1 6 6 C 1.39677 * 119.87479 * 179.74736 * 5 4 2 7 7 C 1.47723 * 120.11360 * 180.25379 * 6 5 4 8 8 O 1.21572 * 120.00199 * 0.25479 * 7 6 5 9 9 N 1.34776 * 119.99807 * 180.24906 * 7 6 5 10 10 C 1.46499 * 120.00021 * 179.97438 * 9 7 6 11 11 H 1.09006 * 112.85162 * 334.67286 * 10 9 7 12 12 C 1.53781 * 113.61332 * 105.86413 * 10 9 7 13 13 C 1.53960 * 87.02136 * 139.95159 * 12 10 9 14 14 H 1.09007 * 113.60683 * 89.19665 * 13 12 10 15 15 C 1.52999 * 113.66984 * 220.06900 * 13 12 10 16 16 N 1.46500 * 109.46865 * 272.56174 * 15 13 12 17 17 C 1.34430 * 126.82454 * 124.71449 * 16 15 13 18 18 N 1.30830 * 108.07822 * 179.88773 * 17 16 15 19 19 C 1.33244 * 109.82807 * 0.38438 * 18 17 16 20 20 N 1.30714 * 108.94780 * 359.75497 * 19 18 17 21 21 C 1.53775 * 87.10811 * 334.64113 * 13 12 10 22 22 C 1.39624 * 119.76517 * 0.50529 * 6 5 4 23 23 C 1.37857 * 119.87940 * 359.77069 * 22 6 5 24 24 C 1.38630 * 120.12273 * 359.97438 * 23 22 6 25 25 F 1.35100 * 119.88455 * 180.02562 * 24 23 22 26 26 H 0.96708 * 114.00101 * 59.99198 * 1 2 3 27 27 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 28 28 H 1.48497 * 110.00028 * 298.68295 * 3 2 1 29 29 H 1.48501 * 109.99652 * 59.99990 * 3 2 1 30 30 H 1.08000 * 120.05917 * 0.02562 * 5 4 2 31 31 H 0.96993 * 120.00156 * 0.02562 * 9 7 6 32 32 H 1.09001 * 113.61982 * 254.53042 * 12 10 9 33 33 H 1.08999 * 113.61676 * 25.43550 * 12 10 9 34 34 H 1.08996 * 109.46927 * 32.55698 * 15 13 12 35 35 H 1.08991 * 109.46881 * 152.55936 * 15 13 12 36 36 H 1.08005 * 125.95947 * 0.02993 * 17 16 15 37 37 H 1.08000 * 125.52333 * 179.73178 * 19 18 17 38 38 H 1.09002 * 113.61546 * 270.80465 * 21 13 12 39 39 H 1.09000 * 113.61749 * 139.90706 * 21 13 12 40 40 H 1.07999 * 120.05934 * 179.74291 * 22 6 5 41 41 H 1.08005 * 119.94033 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4572 -1.9799 -1.1253 6 6 2.9175 -2.6392 -2.2674 7 6 3.4771 -4.0022 -2.1615 8 8 3.5332 -4.5539 -1.0797 9 7 3.9252 -4.6342 -3.2644 10 6 4.4806 -5.9858 -3.1593 11 1 4.8825 -6.2025 -2.1695 12 6 3.5436 -7.0803 -3.6968 13 6 4.7962 -7.7463 -4.2952 14 1 5.2847 -8.4460 -3.6170 15 6 4.5737 -8.3296 -5.6920 16 7 4.0723 -9.7011 -5.5742 17 6 2.9455 -10.1962 -6.1150 18 7 2.8552 -11.4579 -5.7807 19 6 3.8966 -11.8005 -5.0234 20 7 4.6701 -10.7583 -4.8689 21 6 5.4384 -6.3491 -4.3062 22 6 2.8518 -2.0032 -3.5087 23 6 2.3291 -0.7310 -3.6017 24 6 1.8687 -0.0832 -2.4658 25 9 1.3569 1.1634 -2.5626 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5879 2.4586 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 2.5091 -2.4658 -0.1622 31 1 3.8806 -4.1940 -4.1275 32 1 3.0663 -7.6698 -2.9140 33 1 2.8390 -6.7220 -4.4473 34 1 3.8453 -7.7213 -6.2280 35 1 5.5167 -8.3332 -6.2385 36 1 2.2394 -9.6487 -6.7216 37 1 4.0726 -12.7804 -4.6048 38 1 5.2529 -5.7905 -5.2236 39 1 6.4887 -6.3490 -4.0145 40 1 3.2102 -2.5069 -4.3942 41 1 2.2774 -0.2383 -4.5615 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:44 Heat of formation + Delta-G solvation = 50.784024 kcal Electronic energy + Delta-G solvation = -27193.680279 eV Core-core repulsion = 22993.279879 eV Total energy + Delta-G solvation = -4200.400400 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.46932 -42.97014 -41.58171 -40.32219 -39.21609 -37.82039 -35.54208 -34.21062 -32.81308 -32.15415 -31.87173 -29.03278 -27.02738 -26.73944 -25.62663 -23.90638 -23.50781 -22.92446 -22.31044 -21.57084 -20.54820 -19.20704 -18.87982 -18.43103 -17.90729 -17.90654 -17.29616 -17.08167 -16.64774 -16.30676 -16.25086 -15.98136 -15.84051 -15.62977 -15.31646 -15.04299 -15.01276 -14.70300 -14.47061 -14.04231 -13.87864 -13.67876 -13.46608 -13.38619 -13.21779 -12.94840 -12.69046 -12.40169 -12.34324 -11.86368 -11.51970 -11.35531 -11.20352 -10.96552 -10.87919 -10.77994 -10.50593 -10.21116 -10.11006 -9.80982 -4.98371 -0.51835 0.02256 0.71683 1.18300 1.47493 1.55511 1.57567 1.92411 2.02060 2.04563 2.55290 2.97145 3.22412 3.37563 3.44193 3.46976 3.49826 3.55298 3.56728 3.62059 3.78478 3.91021 3.98002 4.11124 4.15843 4.19061 4.31140 4.42197 4.53947 4.62851 4.71011 4.75725 4.77297 4.80659 4.89753 4.94986 4.99601 5.05012 5.09111 5.20330 5.32815 5.46538 5.52556 5.60857 5.97757 6.29546 6.45844 7.12800 7.14692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.085 4.085 3 Si 0.751 3.249 4 C -0.156 4.156 5 C -0.024 4.024 6 C -0.153 4.153 7 C 0.559 3.441 8 O -0.582 6.582 9 N -0.695 5.695 10 C 0.117 3.883 11 H 0.086 0.914 12 C -0.143 4.143 13 C -0.117 4.117 14 H 0.078 0.922 15 C 0.135 3.865 16 N -0.377 5.377 17 C 0.256 3.744 18 N -0.587 5.587 19 C 0.185 3.815 20 N -0.351 5.351 21 C -0.113 4.113 22 C -0.036 4.036 23 C -0.146 4.146 24 C 0.108 3.892 25 F -0.131 7.131 26 H 0.384 0.616 27 H 0.127 0.873 28 H -0.250 1.250 29 H -0.308 1.308 30 H 0.135 0.865 31 H 0.420 0.580 32 H 0.041 0.959 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.259 0.741 37 H 0.230 0.770 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.180 0.820 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 4.307 -9.419 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.193 4.193 3 Si 0.654 3.346 4 C -0.157 4.157 5 C -0.043 4.043 6 C -0.156 4.156 7 C 0.347 3.653 8 O -0.462 6.462 9 N -0.347 5.347 10 C 0.012 3.988 11 H 0.104 0.896 12 C -0.182 4.182 13 C -0.137 4.137 14 H 0.097 0.903 15 C 0.015 3.985 16 N -0.168 5.168 17 C -0.040 4.040 18 N -0.315 5.315 19 C -0.118 4.118 20 N -0.179 5.179 21 C -0.152 4.152 22 C -0.055 4.055 23 C -0.164 4.164 24 C 0.089 3.911 25 F -0.109 7.109 26 H 0.233 0.767 27 H 0.145 0.855 28 H -0.175 1.175 29 H -0.237 1.237 30 H 0.153 0.847 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.120 0.880 36 H 0.275 0.725 37 H 0.246 0.754 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.197 0.803 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.773 4.341 -7.843 9.726 hybrid contribution -1.441 0.051 -0.122 1.447 sum 2.332 4.392 -7.964 9.389 Atomic orbital electron populations 1.86626 1.18177 1.80286 1.50092 1.25177 0.83586 1.12221 0.98318 0.94639 0.90251 0.72638 0.77042 1.20128 1.04619 0.96392 0.94594 1.21014 0.92343 0.91678 0.99304 1.19986 1.05524 0.94754 0.95360 1.18447 0.77120 0.85562 0.84164 1.90811 1.57597 1.68458 1.29369 1.45701 1.61946 1.16800 1.10271 1.22435 0.95622 0.80601 1.00163 0.89564 1.23623 0.97091 0.96710 1.00764 1.22565 0.98086 0.96742 0.96316 0.90312 1.22243 1.03250 0.75302 0.97697 1.50764 1.17950 1.10856 1.37225 1.26885 0.89925 0.90748 0.96396 1.70538 1.26778 1.14072 1.20101 1.26426 0.89010 0.99901 0.96426 1.77952 1.23556 0.96708 1.19713 1.23312 0.99301 0.93646 0.98901 1.21538 0.93805 0.93268 0.96856 1.21433 1.00476 0.95961 0.98540 1.18137 0.97698 0.80364 0.94928 1.91555 1.84674 1.38256 1.96434 0.76715 0.85464 1.17526 1.23682 0.84674 0.74046 0.93958 0.86918 0.83780 0.87974 0.72497 0.75410 0.85300 0.89841 0.80259 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.53 12.88 -148.98 -1.92 -4.45 16 2 C -0.08 -0.09 2.81 71.24 0.20 0.11 16 3 Si 0.75 0.04 30.81 68.60 2.11 2.15 16 4 C -0.16 0.05 4.78 -19.86 -0.09 -0.05 16 5 C -0.02 -0.02 9.21 22.52 0.21 0.19 16 6 C -0.15 0.37 5.87 -20.09 -0.12 0.25 16 7 C 0.56 0.63 7.77 86.75 0.67 1.30 16 8 O -0.58 -6.71 15.96 -3.94 -0.06 -6.78 16 9 N -0.70 5.01 5.31 -443.02 -2.35 2.66 16 10 C 0.12 -0.61 4.21 45.52 0.19 -0.42 16 11 H 0.09 0.17 7.50 -2.38 -0.02 0.15 16 12 C -0.14 0.84 7.45 31.18 0.23 1.08 16 13 C -0.12 0.87 3.88 -10.21 -0.04 0.83 16 14 H 0.08 -0.04 8.00 -2.38 -0.02 -0.06 16 15 C 0.14 -1.40 6.39 86.38 0.55 -0.84 16 16 N -0.38 0.57 3.69 -352.07 -1.30 -0.73 16 17 C 0.26 -0.52 12.63 180.36 2.28 1.76 16 18 N -0.59 -3.32 11.19 -204.00 -2.28 -5.60 16 19 C 0.19 0.99 13.03 180.76 2.36 3.35 16 20 N -0.35 -2.03 12.45 -61.24 -0.76 -2.79 16 21 C -0.11 1.34 7.39 31.12 0.23 1.57 16 22 C -0.04 0.35 9.54 22.51 0.21 0.57 16 23 C -0.15 1.17 10.01 22.27 0.22 1.39 16 24 C 0.11 -0.26 6.63 22.47 0.15 -0.11 16 25 F -0.13 -0.02 12.57 44.97 0.57 0.55 16 26 H 0.38 -0.26 8.41 -74.05 -0.62 -0.88 16 27 H 0.13 -0.03 7.76 -2.39 -0.02 -0.05 16 28 H -0.25 -0.77 5.27 99.48 0.52 -0.24 16 29 H -0.31 -2.48 7.11 99.48 0.71 -1.78 16 30 H 0.14 0.44 7.58 -2.91 -0.02 0.42 16 31 H 0.42 -6.59 6.74 -92.71 -0.62 -7.22 16 32 H 0.04 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.11 -1.23 7.90 -2.39 -0.02 -1.25 16 34 H 0.14 -2.67 7.80 -2.39 -0.02 -2.69 16 35 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 36 H 0.26 -3.27 8.06 -2.91 -0.02 -3.30 16 37 H 0.23 -0.01 8.06 -2.91 -0.02 -0.04 16 38 H 0.13 -2.42 8.07 -2.39 -0.02 -2.44 16 39 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.18 -3.36 6.40 -2.91 -0.02 -3.38 16 41 H 0.17 -2.29 8.06 -2.91 -0.02 -2.31 16 Total: 0.00 -32.06 353.59 0.96 -31.10 By element: Atomic # 1 Polarization: -26.80 SS G_CDS: -0.30 Total: -27.10 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.25 Total: 10.98 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -6.70 Total: -6.46 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.98 Total: -11.23 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.57 Total: 0.55 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 2.11 Total: 2.15 kcal Total: -32.06 0.96 -31.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.887 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds