Wall clock time and date at job start Sun Mar 7 2021 00:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.35086 * 126.07494 * 255.02064 * 4 2 1 6 6 N 1.35031 * 107.97996 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93296 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47154 * 125.00014 * 7 6 5 9 9 O 1.21283 * 119.99480 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00242 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84152 * 25.33341 * 11 10 8 13 13 C 1.53783 * 113.61585 * 156.52937 * 11 10 8 14 14 C 1.53778 * 87.07751 * 139.98237 * 13 11 10 15 15 H 1.08998 * 113.61489 * 89.19932 * 14 13 11 16 16 C 1.53004 * 113.61153 * 220.01521 * 14 13 11 17 17 N 1.46497 * 109.47045 * 185.00064 * 16 14 13 18 18 C 1.34429 * 126.82478 * 124.71253 * 17 16 14 19 19 N 1.30829 * 108.07986 * 179.89265 * 18 17 16 20 20 C 1.33237 * 109.83039 * 0.38493 * 19 18 17 21 21 N 1.30711 * 108.94763 * 359.75849 * 20 19 18 22 22 C 1.53777 * 113.61528 * 254.14020 * 11 10 8 23 23 N 1.40076 * 108.13697 * 0.02562 * 6 5 4 24 24 C 1.31612 * 108.10900 * 359.71663 * 23 6 5 25 25 C 1.48425 * 126.04151 * 180.29770 * 24 23 6 26 26 C 1.39322 * 120.12055 * 144.88817 * 25 24 23 27 27 C 1.38027 * 119.87626 * 179.74589 * 26 25 24 28 28 C 1.38328 * 120.11537 * 0.55574 * 27 26 25 29 29 C 1.38316 * 120.24329 * 359.69760 * 28 27 26 30 30 C 1.38018 * 120.11955 * 0.02562 * 29 28 27 31 31 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 32 32 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 33 33 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 34 34 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 35 35 H 1.08003 * 126.00768 * 359.96978 * 5 4 2 36 36 H 1.08991 * 109.47500 * 245.00417 * 7 6 5 37 37 H 1.09001 * 109.46568 * 5.00442 * 7 6 5 38 38 H 0.97006 * 120.00198 * 0.02562 * 10 8 7 39 39 H 1.09000 * 113.61168 * 254.53348 * 13 11 10 40 40 H 1.09001 * 113.61004 * 25.43322 * 13 11 10 41 41 H 1.08998 * 109.47376 * 305.00294 * 16 14 13 42 42 H 1.09003 * 109.46489 * 65.00702 * 16 14 13 43 43 H 1.08004 * 125.95930 * 0.03825 * 18 17 16 44 44 H 1.08003 * 125.52873 * 179.79978 * 20 19 18 45 45 H 1.09009 * 113.61582 * 334.56481 * 22 11 10 46 46 H 1.09001 * 113.61880 * 105.46866 * 22 11 10 47 47 H 1.07994 * 120.06250 * 0.02562 * 26 25 24 48 48 H 1.07993 * 119.94245 * 180.27864 * 27 26 25 49 49 H 1.08004 * 119.87336 * 179.72232 * 28 27 26 50 50 H 1.08003 * 119.93628 * 180.02562 * 29 28 27 51 51 H 1.08008 * 120.06018 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4624 -0.1249 2.3260 6 7 2.7884 -1.0989 3.2026 7 6 3.3938 -0.9008 4.5218 8 6 2.5405 -1.5657 5.5711 9 8 1.5267 -2.1480 5.2485 10 7 2.9039 -1.5131 6.8678 11 6 2.0747 -2.1599 7.8878 12 1 1.4801 -2.9825 7.4906 13 6 2.8437 -2.5187 9.1703 14 6 1.5991 -2.0631 9.9501 15 1 0.8739 -2.8592 10.1188 16 6 1.9262 -1.2781 11.2220 17 7 0.6884 -0.9939 11.9523 18 6 0.4183 -1.3051 13.2319 19 7 -0.7880 -0.8801 13.5072 20 6 -1.3203 -0.3025 12.4310 21 7 -0.4542 -0.3476 11.4530 22 6 1.2645 -1.1702 8.7415 23 7 2.4482 -2.3317 2.6310 24 6 1.9259 -2.1024 1.4449 25 6 1.4229 -3.1296 0.4989 26 6 0.3154 -2.8596 -0.3022 27 6 -0.1449 -3.8165 -1.1840 28 6 0.4841 -5.0459 -1.2648 29 6 1.5807 -5.3210 -0.4679 30 6 2.0529 -4.3693 0.4131 31 1 -0.3934 0.4418 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5616 2.4678 -1.2086 34 1 1.5878 2.4586 1.2241 35 1 2.6025 0.9357 2.4742 36 1 4.3915 -1.3396 4.5333 37 1 3.4637 0.1662 4.7329 38 1 3.7146 -1.0470 7.1258 39 1 3.0554 -3.5834 9.2690 40 1 3.7201 -1.8941 9.3430 41 1 2.5924 -1.8677 11.8517 42 1 2.4139 -0.3405 10.9549 43 1 1.0824 -1.8148 13.9144 44 1 -2.3070 0.1330 12.3757 45 1 1.7084 -0.1761 8.7969 46 1 0.2030 -1.1477 8.4947 47 1 -0.1791 -1.9018 -0.2367 48 1 -1.0005 -3.6068 -1.8087 49 1 0.1178 -5.7934 -1.9529 50 1 2.0683 -6.2823 -0.5354 51 1 2.9095 -4.5850 1.0346 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:48 Heat of formation + Delta-G solvation = 174.413011 kcal Electronic energy + Delta-G solvation = -35357.844152 eV Core-core repulsion = 30650.115583 eV Total energy + Delta-G solvation = -4707.728570 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.174 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.01919 -42.45145 -41.27330 -39.78996 -39.42532 -37.84907 -35.58533 -34.78329 -34.06744 -32.23802 -32.15294 -31.69753 -31.29222 -29.52070 -28.49479 -26.98103 -26.01862 -24.80884 -23.80005 -23.28634 -22.92315 -22.52094 -21.78778 -21.48672 -21.07608 -20.73099 -18.81181 -18.45275 -18.41206 -17.69289 -17.52181 -16.92118 -16.88435 -16.75981 -16.35458 -16.14530 -15.96561 -15.83281 -15.68078 -15.44100 -15.38594 -15.07402 -14.85130 -14.73642 -14.44512 -14.14074 -14.06357 -13.92456 -13.80345 -13.69680 -13.58348 -13.36675 -13.15236 -13.01559 -12.50727 -12.41982 -12.28667 -12.12344 -11.97154 -11.64203 -11.61409 -11.49532 -11.20297 -10.95396 -10.76115 -10.67350 -10.55490 -10.38786 -10.21656 -9.66957 -9.61948 -9.14088 -4.96317 0.28360 0.65101 0.71901 0.82240 1.20654 1.27157 1.34828 1.39959 1.56854 1.85954 1.96809 1.99744 2.03606 3.02644 3.10909 3.17977 3.26554 3.34590 3.37230 3.44604 3.48316 3.54434 3.62327 3.73336 3.76260 3.82207 3.89671 3.94777 4.02879 4.14630 4.25018 4.28695 4.34693 4.39490 4.46064 4.48700 4.51901 4.53659 4.65136 4.72677 4.78782 4.89632 4.92645 4.95960 4.98486 5.18165 5.26925 5.32878 5.38403 5.46474 5.47001 5.78298 5.78658 5.81007 5.84988 5.87108 6.24557 6.26492 6.50077 6.71520 7.01677 7.12240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.036 4.036 3 Si 0.686 3.314 4 C -0.248 4.248 5 C 0.061 3.939 6 N -0.358 5.358 7 C 0.116 3.884 8 C 0.499 3.501 9 O -0.502 6.502 10 N -0.720 5.720 11 C 0.125 3.875 12 H 0.116 0.884 13 C -0.136 4.136 14 C -0.119 4.119 15 H 0.100 0.900 16 C 0.141 3.859 17 N -0.380 5.380 18 C 0.252 3.748 19 N -0.546 5.546 20 C 0.197 3.803 21 N -0.313 5.313 22 C -0.134 4.134 23 N -0.250 5.250 24 C 0.135 3.865 25 C -0.021 4.021 26 C -0.099 4.099 27 C -0.125 4.125 28 C -0.112 4.112 29 C -0.127 4.127 30 C -0.091 4.091 31 H 0.375 0.625 32 H 0.116 0.884 33 H -0.255 1.255 34 H -0.260 1.260 35 H 0.178 0.822 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.218 0.782 44 H 0.217 0.783 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.154 0.846 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 2.602 2.876 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.147 4.147 3 Si 0.587 3.413 4 C -0.259 4.259 5 C -0.084 4.084 6 N -0.140 5.140 7 C -0.010 4.010 8 C 0.282 3.718 9 O -0.374 6.374 10 N -0.373 5.373 11 C 0.020 3.980 12 H 0.134 0.866 13 C -0.174 4.174 14 C -0.139 4.139 15 H 0.119 0.881 16 C 0.019 3.981 17 N -0.171 5.171 18 C -0.045 4.045 19 N -0.273 5.273 20 C -0.106 4.106 21 N -0.140 5.140 22 C -0.173 4.173 23 N -0.070 5.070 24 C -0.031 4.031 25 C -0.023 4.023 26 C -0.118 4.118 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.145 4.145 30 C -0.111 4.111 31 H 0.223 0.777 32 H 0.134 0.866 33 H -0.180 1.180 34 H -0.185 1.185 35 H 0.195 0.805 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.235 0.765 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.171 0.829 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.101 2.126 2.664 8.789 hybrid contribution -0.606 0.539 0.468 0.936 sum 7.495 2.665 3.132 8.549 Atomic orbital electron populations 1.86491 1.18365 1.79135 1.49487 1.24248 0.83163 1.10083 0.97162 0.95183 0.91405 0.74252 0.80453 1.20373 1.13154 0.93255 0.99152 1.22277 1.00324 0.95381 0.90384 1.47829 1.48670 1.04413 1.13075 1.21514 0.97185 1.03436 0.78841 1.20595 0.86618 0.81176 0.83394 1.90847 1.24867 1.41051 1.80638 1.45874 1.28213 1.57153 1.06057 1.22509 0.93030 0.96695 0.85779 0.86619 1.23370 0.96992 1.02859 0.94225 1.22656 0.99057 0.99286 0.92918 0.88139 1.21857 0.81706 1.01018 0.93534 1.50587 1.13458 1.43088 1.09978 1.26139 0.94665 0.97576 0.86080 1.70565 1.08005 1.18931 1.29825 1.26079 1.00465 0.98001 0.86027 1.78090 0.94306 1.18555 1.23090 1.23484 1.01836 0.98081 0.93921 1.77785 1.19124 1.01694 1.08397 1.20634 0.97958 0.92370 0.92185 1.17782 0.96678 0.92025 0.95826 1.21906 0.94939 1.00977 0.93990 1.21136 1.00338 0.93656 0.99163 1.21295 0.95765 0.97067 0.98916 1.21074 0.97288 0.99342 0.96794 1.21206 0.99673 0.92315 0.97868 0.77701 0.86588 1.17992 1.18540 0.80538 0.86309 0.85439 0.76349 0.89845 0.88896 0.87653 0.89087 0.76533 0.76716 0.89484 0.90447 0.82911 0.85781 0.86014 0.85847 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.70 10.08 -35.23 -0.35 -1.06 16 2 C -0.04 -0.01 2.01 36.01 0.07 0.06 16 3 Si 0.69 -0.95 30.81 -169.99 -5.24 -6.19 16 4 C -0.25 -0.44 5.34 -104.75 -0.56 -1.00 16 5 C 0.06 0.00 9.96 -17.26 -0.17 -0.17 16 6 N -0.36 -0.52 3.40 -62.59 -0.21 -0.74 16 7 C 0.12 -0.31 6.99 -5.19 -0.04 -0.35 16 8 C 0.50 0.14 7.86 -10.99 -0.09 0.06 16 9 O -0.50 -3.03 15.32 5.55 0.09 -2.94 16 10 N -0.72 2.19 5.36 -53.02 -0.28 1.91 16 11 C 0.12 -0.25 4.21 -67.12 -0.28 -0.53 16 12 H 0.12 0.10 7.50 -51.93 -0.39 -0.29 16 13 C -0.14 0.65 7.39 -25.92 -0.19 0.45 16 14 C -0.12 0.39 3.85 -89.72 -0.35 0.04 16 15 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 16 C 0.14 -0.56 6.39 -4.04 -0.03 -0.59 16 17 N -0.38 0.15 3.69 -62.63 -0.23 -0.09 16 18 C 0.25 -0.11 12.63 -90.66 -1.14 -1.26 16 19 N -0.55 -1.46 11.19 -15.83 -0.18 -1.64 16 20 C 0.20 0.42 13.03 -91.82 -1.20 -0.78 16 21 N -0.31 -0.74 12.57 29.29 0.37 -0.37 16 22 C -0.13 0.22 7.45 -25.83 -0.19 0.03 16 23 N -0.25 -1.28 11.63 33.43 0.39 -0.89 16 24 C 0.13 0.61 6.74 -82.78 -0.56 0.05 16 25 C -0.02 -0.10 5.80 -104.89 -0.61 -0.71 16 26 C -0.10 -0.39 8.95 -39.26 -0.35 -0.74 16 27 C -0.12 -0.36 10.04 -39.63 -0.40 -0.76 16 28 C -0.11 -0.27 10.04 -39.52 -0.40 -0.67 16 29 C -0.13 -0.35 10.03 -39.63 -0.40 -0.75 16 30 C -0.09 -0.36 9.75 -39.26 -0.38 -0.75 16 31 H 0.37 -0.41 8.70 45.56 0.40 -0.01 16 32 H 0.12 0.06 7.86 -51.93 -0.41 -0.35 16 33 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 34 H -0.26 0.05 6.99 56.52 0.40 0.45 16 35 H 0.18 -0.61 6.33 -52.48 -0.33 -0.94 16 36 H 0.12 -0.59 8.14 -51.93 -0.42 -1.02 16 37 H 0.13 -0.86 8.07 -51.93 -0.42 -1.28 16 38 H 0.40 -2.67 8.71 -40.82 -0.36 -3.02 16 39 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 40 H 0.09 -0.62 8.07 -51.93 -0.42 -1.04 16 41 H 0.11 -0.72 8.09 -51.93 -0.42 -1.14 16 42 H 0.09 -0.41 7.85 -51.93 -0.41 -0.82 16 43 H 0.22 -1.07 8.06 -52.48 -0.42 -1.49 16 44 H 0.22 -0.16 8.06 -52.48 -0.42 -0.59 16 45 H 0.09 -0.19 7.90 -51.92 -0.41 -0.60 16 46 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.15 0.57 4.50 -52.49 -0.24 0.33 16 48 H 0.12 0.14 8.06 -52.49 -0.42 -0.28 16 49 H 0.12 0.04 8.06 -52.48 -0.42 -0.38 16 50 H 0.12 0.09 8.06 -52.48 -0.42 -0.34 16 51 H 0.12 0.43 8.06 -52.48 -0.42 0.00 16 LS Contribution 431.09 15.07 6.50 6.50 Total: 0.00 -15.25 431.09 -13.24 -28.49 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: -6.83 Total: -14.64 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -7.25 Total: -8.35 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -0.15 Total: -1.81 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.27 Total: -4.00 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.24 Total: -6.19 kcal Total LS contribution 6.50 Total: 6.50 kcal Total: -15.25 -13.24 -28.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.904 kcal (2) G-P(sol) polarization free energy of solvation -15.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds