Wall clock time and date at job start Sun Mar 7 2021 00:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.35086 * 126.07494 * 255.02064 * 4 2 1 6 6 N 1.35031 * 107.97996 * 180.02562 * 5 4 2 7 7 C 1.46499 * 125.93296 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47154 * 125.00014 * 7 6 5 9 9 O 1.21283 * 119.99480 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00242 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84152 * 25.33341 * 11 10 8 13 13 C 1.53783 * 113.61585 * 156.52937 * 11 10 8 14 14 C 1.53778 * 87.07751 * 139.98237 * 13 11 10 15 15 H 1.08998 * 113.61489 * 89.19932 * 14 13 11 16 16 C 1.53004 * 113.61153 * 220.01521 * 14 13 11 17 17 N 1.46497 * 109.47045 * 185.00064 * 16 14 13 18 18 C 1.34429 * 126.82478 * 124.71253 * 17 16 14 19 19 N 1.30829 * 108.07986 * 179.89265 * 18 17 16 20 20 C 1.33237 * 109.83039 * 0.38493 * 19 18 17 21 21 N 1.30711 * 108.94763 * 359.75849 * 20 19 18 22 22 C 1.53777 * 113.61528 * 254.14020 * 11 10 8 23 23 N 1.40076 * 108.13697 * 0.02562 * 6 5 4 24 24 C 1.31612 * 108.10900 * 359.71663 * 23 6 5 25 25 C 1.48425 * 126.04151 * 180.29770 * 24 23 6 26 26 C 1.39322 * 120.12055 * 144.88817 * 25 24 23 27 27 C 1.38027 * 119.87626 * 179.74589 * 26 25 24 28 28 C 1.38328 * 120.11537 * 0.55574 * 27 26 25 29 29 C 1.38316 * 120.24329 * 359.69760 * 28 27 26 30 30 C 1.38018 * 120.11955 * 0.02562 * 29 28 27 31 31 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 32 32 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 33 33 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 34 34 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 35 35 H 1.08003 * 126.00768 * 359.96978 * 5 4 2 36 36 H 1.08991 * 109.47500 * 245.00417 * 7 6 5 37 37 H 1.09001 * 109.46568 * 5.00442 * 7 6 5 38 38 H 0.97006 * 120.00198 * 0.02562 * 10 8 7 39 39 H 1.09000 * 113.61168 * 254.53348 * 13 11 10 40 40 H 1.09001 * 113.61004 * 25.43322 * 13 11 10 41 41 H 1.08998 * 109.47376 * 305.00294 * 16 14 13 42 42 H 1.09003 * 109.46489 * 65.00702 * 16 14 13 43 43 H 1.08004 * 125.95930 * 0.03825 * 18 17 16 44 44 H 1.08003 * 125.52873 * 179.79978 * 20 19 18 45 45 H 1.09009 * 113.61582 * 334.56481 * 22 11 10 46 46 H 1.09001 * 113.61880 * 105.46866 * 22 11 10 47 47 H 1.07994 * 120.06250 * 0.02562 * 26 25 24 48 48 H 1.07993 * 119.94245 * 180.27864 * 27 26 25 49 49 H 1.08004 * 119.87336 * 179.72232 * 28 27 26 50 50 H 1.08003 * 119.93628 * 180.02562 * 29 28 27 51 51 H 1.08008 * 120.06018 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4624 -0.1249 2.3260 6 7 2.7884 -1.0989 3.2026 7 6 3.3938 -0.9008 4.5218 8 6 2.5405 -1.5657 5.5711 9 8 1.5267 -2.1480 5.2485 10 7 2.9039 -1.5131 6.8678 11 6 2.0747 -2.1599 7.8878 12 1 1.4801 -2.9825 7.4906 13 6 2.8437 -2.5187 9.1703 14 6 1.5991 -2.0631 9.9501 15 1 0.8739 -2.8592 10.1188 16 6 1.9262 -1.2781 11.2220 17 7 0.6884 -0.9939 11.9523 18 6 0.4183 -1.3051 13.2319 19 7 -0.7880 -0.8801 13.5072 20 6 -1.3203 -0.3025 12.4310 21 7 -0.4542 -0.3476 11.4530 22 6 1.2645 -1.1702 8.7415 23 7 2.4482 -2.3317 2.6310 24 6 1.9259 -2.1024 1.4449 25 6 1.4229 -3.1296 0.4989 26 6 0.3154 -2.8596 -0.3022 27 6 -0.1449 -3.8165 -1.1840 28 6 0.4841 -5.0459 -1.2648 29 6 1.5807 -5.3210 -0.4679 30 6 2.0529 -4.3693 0.4131 31 1 -0.3934 0.4418 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5616 2.4678 -1.2086 34 1 1.5878 2.4586 1.2241 35 1 2.6025 0.9357 2.4742 36 1 4.3915 -1.3396 4.5333 37 1 3.4637 0.1662 4.7329 38 1 3.7146 -1.0470 7.1258 39 1 3.0554 -3.5834 9.2690 40 1 3.7201 -1.8941 9.3430 41 1 2.5924 -1.8677 11.8517 42 1 2.4139 -0.3405 10.9549 43 1 1.0824 -1.8148 13.9144 44 1 -2.3070 0.1330 12.3757 45 1 1.7084 -0.1761 8.7969 46 1 0.2030 -1.1477 8.4947 47 1 -0.1791 -1.9018 -0.2367 48 1 -1.0005 -3.6068 -1.8087 49 1 0.1178 -5.7934 -1.9529 50 1 2.0683 -6.2823 -0.5354 51 1 2.9095 -4.5850 1.0346 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:47 Heat of formation + Delta-G solvation = 171.176731 kcal Electronic energy + Delta-G solvation = -35357.984488 eV Core-core repulsion = 30650.115583 eV Total energy + Delta-G solvation = -4707.868905 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.174 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.99216 -42.51073 -41.19890 -39.88259 -39.47644 -37.90225 -35.50682 -34.82382 -34.01684 -32.32457 -32.17291 -31.88178 -31.43247 -29.45100 -28.41234 -26.76673 -26.04218 -24.80976 -23.86576 -23.49000 -22.87631 -22.47806 -21.76253 -21.52158 -21.08238 -20.65649 -18.81762 -18.38130 -18.32818 -17.81524 -17.45206 -16.88321 -16.80577 -16.73652 -16.41289 -16.12795 -16.00498 -15.85806 -15.75268 -15.48997 -15.37177 -15.01933 -14.90147 -14.59467 -14.49851 -14.28822 -14.14987 -13.81675 -13.70341 -13.66549 -13.48959 -13.37886 -13.11632 -12.89949 -12.55971 -12.40166 -12.27107 -12.15035 -11.95986 -11.70575 -11.62585 -11.46307 -11.26905 -10.99627 -10.80872 -10.68203 -10.56921 -10.41701 -10.12931 -9.88061 -9.77096 -9.29694 -4.85142 0.06497 0.46888 0.69145 0.80426 1.29130 1.41635 1.43372 1.47054 1.64514 1.70219 1.99778 2.04217 2.09882 2.89553 3.27816 3.34749 3.41137 3.44687 3.52356 3.54246 3.65455 3.68677 3.72158 3.90556 3.93863 4.02583 4.10608 4.12345 4.12505 4.16537 4.19088 4.31039 4.33099 4.44761 4.51962 4.55537 4.60472 4.68069 4.68688 4.77587 4.79340 4.86344 4.93706 4.99511 5.01220 5.13503 5.16964 5.30745 5.32612 5.44055 5.50220 5.56510 5.61092 5.63779 5.90522 5.94806 6.05186 6.45711 6.55266 6.60265 7.12485 7.16122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.052 4.052 3 Si 0.786 3.214 4 C -0.262 4.262 5 C 0.074 3.926 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.493 3.507 9 O -0.572 6.572 10 N -0.699 5.699 11 C 0.116 3.884 12 H 0.076 0.924 13 C -0.110 4.110 14 C -0.114 4.114 15 H 0.077 0.923 16 C 0.135 3.865 17 N -0.379 5.379 18 C 0.256 3.744 19 N -0.586 5.586 20 C 0.182 3.818 21 N -0.345 5.345 22 C -0.133 4.133 23 N -0.293 5.293 24 C 0.109 3.891 25 C -0.037 4.037 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.117 4.117 29 C -0.130 4.130 30 C -0.108 4.108 31 H 0.383 0.617 32 H 0.106 0.894 33 H -0.305 1.305 34 H -0.264 1.264 35 H 0.218 0.782 36 H 0.147 0.853 37 H 0.178 0.822 38 H 0.424 0.576 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.260 0.740 44 H 0.228 0.772 45 H 0.099 0.901 46 H 0.036 0.964 47 H 0.151 0.849 48 H 0.140 0.860 49 H 0.145 0.855 50 H 0.143 0.857 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 3.889 4.200 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.160 4.160 3 Si 0.689 3.311 4 C -0.274 4.274 5 C -0.071 4.071 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.278 3.722 9 O -0.449 6.449 10 N -0.353 5.353 11 C 0.010 3.990 12 H 0.094 0.906 13 C -0.148 4.148 14 C -0.134 4.134 15 H 0.096 0.904 16 C 0.015 3.985 17 N -0.170 5.170 18 C -0.040 4.040 19 N -0.314 5.314 20 C -0.120 4.120 21 N -0.173 5.173 22 C -0.172 4.172 23 N -0.115 5.115 24 C -0.056 4.056 25 C -0.039 4.039 26 C -0.133 4.133 27 C -0.150 4.150 28 C -0.135 4.135 29 C -0.148 4.148 30 C -0.128 4.128 31 H 0.233 0.767 32 H 0.124 0.876 33 H -0.233 1.233 34 H -0.189 1.189 35 H 0.235 0.765 36 H 0.165 0.835 37 H 0.196 0.804 38 H 0.263 0.737 39 H 0.105 0.895 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.276 0.724 44 H 0.244 0.756 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.168 0.832 48 H 0.158 0.842 49 H 0.163 0.837 50 H 0.161 0.839 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.193 3.393 4.030 12.370 hybrid contribution -1.556 0.099 0.069 1.561 sum 9.636 3.492 4.099 11.039 Atomic orbital electron populations 1.86453 1.19230 1.79713 1.50075 1.24646 0.82734 1.12256 0.96413 0.94058 0.89669 0.70132 0.77247 1.20559 1.14089 0.92319 1.00392 1.22840 0.98378 0.96719 0.89209 1.48142 1.48052 1.03595 1.14268 1.22031 0.97025 1.06337 0.75979 1.21230 0.85975 0.80283 0.84681 1.90832 1.28022 1.44273 1.81790 1.45714 1.28444 1.56167 1.04928 1.22394 0.93882 0.95773 0.86910 0.90560 1.23289 0.96962 1.03732 0.90813 1.22525 0.99408 0.98310 0.93123 0.90440 1.22234 0.80766 1.02090 0.93394 1.50794 1.13580 1.42312 1.10313 1.26925 0.94245 0.96369 0.86439 1.70536 1.09790 1.20405 1.30678 1.26420 1.01219 0.98294 0.86105 1.78006 0.95562 1.19778 1.23967 1.23451 0.99472 0.99059 0.95219 1.77679 1.20519 1.04272 1.09025 1.20857 0.98703 0.93704 0.92321 1.18045 0.97026 0.92618 0.96242 1.22001 0.95202 1.01387 0.94674 1.21410 1.00796 0.93752 0.99020 1.21592 0.95469 0.97353 0.99084 1.21357 0.97397 0.99821 0.96237 1.21320 1.00044 0.92784 0.98625 0.76750 0.87624 1.23321 1.18939 0.76526 0.83505 0.80438 0.73703 0.89503 0.85401 0.83745 0.87762 0.72421 0.75591 0.88238 0.94476 0.83165 0.84232 0.83673 0.83910 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.38 10.08 -148.98 -1.50 -3.88 16 2 C -0.05 -0.10 2.01 71.24 0.14 0.04 16 3 Si 0.79 -2.77 30.81 68.60 2.11 -0.66 16 4 C -0.26 -1.18 5.34 -19.95 -0.11 -1.29 16 5 C 0.07 -0.06 9.96 83.47 0.83 0.78 16 6 N -0.36 -0.99 3.40 -351.92 -1.20 -2.19 16 7 C 0.11 -0.78 6.99 85.63 0.60 -0.19 16 8 C 0.49 0.44 7.86 87.66 0.69 1.13 16 9 O -0.57 -8.49 15.32 -3.04 -0.05 -8.53 16 10 N -0.70 4.77 5.36 -440.04 -2.36 2.42 16 11 C 0.12 -0.37 4.21 45.52 0.19 -0.18 16 12 H 0.08 0.40 7.50 -2.39 -0.02 0.39 16 13 C -0.11 1.23 7.39 31.12 0.23 1.46 16 14 C -0.11 0.77 3.85 -10.21 -0.04 0.73 16 15 H 0.08 -0.14 8.14 -2.39 -0.02 -0.15 16 16 C 0.14 -1.36 6.39 86.38 0.55 -0.81 16 17 N -0.38 0.51 3.69 -352.06 -1.30 -0.79 16 18 C 0.26 -0.46 12.63 180.36 2.28 1.82 16 19 N -0.59 -3.43 11.19 -204.00 -2.28 -5.71 16 20 C 0.18 1.04 13.03 180.77 2.36 3.39 16 21 N -0.34 -2.02 12.57 -61.25 -0.77 -2.79 16 22 C -0.13 0.31 7.45 31.18 0.23 0.55 16 23 N -0.29 -3.60 11.63 -48.16 -0.56 -4.16 16 24 C 0.11 1.25 6.74 42.53 0.29 1.53 16 25 C -0.04 -0.46 5.80 -20.04 -0.12 -0.57 16 26 C -0.11 -1.20 8.95 22.48 0.20 -1.00 16 27 C -0.13 -0.97 10.04 22.24 0.22 -0.75 16 28 C -0.12 -0.66 10.04 22.31 0.22 -0.44 16 29 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 30 C -0.11 -1.15 9.75 22.48 0.22 -0.93 16 31 H 0.38 -0.30 8.70 -74.06 -0.64 -0.94 16 32 H 0.11 0.33 7.86 -2.39 -0.02 0.31 16 33 H -0.31 -1.48 7.11 99.48 0.71 -0.77 16 34 H -0.26 0.76 6.99 99.48 0.70 1.45 16 35 H 0.22 -2.19 6.33 -2.91 -0.02 -2.21 16 36 H 0.15 -1.85 8.14 -2.39 -0.02 -1.87 16 37 H 0.18 -3.13 8.07 -2.39 -0.02 -3.15 16 38 H 0.42 -6.81 8.71 -92.70 -0.81 -7.62 16 39 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.13 -2.26 8.07 -2.39 -0.02 -2.28 16 41 H 0.14 -2.55 8.09 -2.39 -0.02 -2.57 16 42 H 0.10 -1.26 7.85 -2.39 -0.02 -1.28 16 43 H 0.26 -3.21 8.06 -2.91 -0.02 -3.24 16 44 H 0.23 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.10 -0.50 7.90 -2.38 -0.02 -0.52 16 46 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.15 1.55 4.50 -2.91 -0.01 1.54 16 48 H 0.14 0.46 8.06 -2.91 -0.02 0.43 16 49 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 50 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 51 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 Total: 0.00 -44.25 431.09 0.88 -43.37 By element: Atomic # 1 Polarization: -21.24 SS G_CDS: -0.43 Total: -21.67 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 9.22 Total: 4.60 kcal Atomic # 7 Polarization: -4.75 SS G_CDS: -8.47 Total: -13.22 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.55 Total: -12.42 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.11 Total: -0.66 kcal Total: -44.25 0.88 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.543 kcal (2) G-P(sol) polarization free energy of solvation -44.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds