Wall clock time and date at job start Sun Mar 7 2021 00:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.46670 * 2 1 4 4 C 1.50695 * 109.47201 * 120.00264 * 2 1 3 5 5 C 1.34836 * 125.65603 * 64.99832 * 4 2 1 6 6 C 1.40796 * 107.05200 * 180.02562 * 5 4 2 7 7 C 1.36108 * 106.73260 * 0.02562 * 6 5 4 8 8 C 1.47574 * 125.94452 * 179.97438 * 7 6 5 9 9 C 1.39917 * 119.95299 * 359.97438 * 8 7 6 10 10 C 1.36427 * 120.27743 * 179.71494 * 9 8 7 11 11 C 1.39884 * 120.18292 * 0.56401 * 10 9 8 12 12 C 1.47292 * 120.04120 * 179.73984 * 11 10 9 13 13 O 1.21632 * 119.99331 * 179.72470 * 12 11 10 14 14 N 1.34774 * 120.00710 * 359.72123 * 12 11 10 15 15 C 1.46496 * 120.00099 * 180.02562 * 14 12 11 16 16 H 1.08994 * 112.91109 * 23.75176 * 15 14 12 17 17 C 1.53787 * 113.61210 * 155.00440 * 15 14 12 18 18 C 1.53779 * 87.07963 * 139.97940 * 17 15 14 19 19 H 1.09006 * 113.61280 * 89.11401 * 18 17 15 20 20 C 1.52998 * 113.61250 * 220.01477 * 18 17 15 21 21 N 1.46496 * 109.47269 * 185.00070 * 20 18 17 22 22 C 1.34434 * 126.82209 * 124.71271 * 21 20 18 23 23 N 1.30836 * 108.07295 * 179.89756 * 22 21 20 24 24 C 1.33234 * 109.83335 * 0.37465 * 23 22 21 25 25 N 1.30717 * 108.94663 * 359.77288 * 24 23 22 26 26 C 1.53779 * 87.08402 * 334.56577 * 18 17 15 27 27 C 1.40409 * 119.90484 * 359.46359 * 11 10 9 28 28 O 1.35674 * 120.13114 * 180.22901 * 27 11 10 29 29 C 1.38271 * 119.72566 * 0.25224 * 27 11 10 30 30 O 1.34238 * 125.65174 * 245.35853 * 4 2 1 31 31 H 0.96696 * 114.00167 * 60.00502 * 1 2 3 32 32 H 1.08996 * 109.47151 * 240.00467 * 2 1 3 33 33 H 1.48494 * 110.00223 * 298.68018 * 3 2 1 34 34 H 1.48505 * 109.99825 * 60.00333 * 3 2 1 35 35 H 1.08004 * 126.47496 * 0.06435 * 5 4 2 36 36 H 1.07991 * 126.63620 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.86403 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.90775 * 180.30322 * 10 9 8 39 39 H 0.97002 * 119.99411 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61028 * 254.52900 * 17 15 14 41 41 H 1.08998 * 113.61447 * 25.34434 * 17 15 14 42 42 H 1.09007 * 109.47269 * 305.00322 * 20 18 17 43 43 H 1.08998 * 109.47235 * 64.99931 * 20 18 17 44 44 H 1.07992 * 125.96396 * 0.03426 * 22 21 20 45 45 H 1.07999 * 125.53091 * 179.79714 * 24 23 22 46 46 H 1.09002 * 113.61557 * 270.88569 * 26 18 17 47 47 H 1.09004 * 113.61501 * 139.97990 * 26 18 17 48 48 H 0.96708 * 113.99874 * 90.00326 * 28 27 11 49 49 H 1.07999 * 120.08708 * 180.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7568 -2.0180 1.5093 6 6 2.3801 -2.2628 2.7478 7 6 2.9066 -1.0781 3.1625 8 6 3.6545 -0.8536 4.4146 9 6 3.8744 -1.9167 5.2973 10 6 4.5700 -1.7178 6.4539 11 6 5.0583 -0.4459 6.7711 12 6 5.8040 -0.2335 8.0234 13 8 6.2325 0.8718 8.2959 14 7 6.0114 -1.2636 8.8674 15 6 6.7526 -1.0520 10.1132 16 1 6.7267 -0.0163 10.4517 17 6 6.4091 -2.0689 11.2146 18 6 7.9084 -2.0871 11.5560 19 1 8.1984 -1.3342 12.2890 20 6 8.4440 -3.4808 11.8900 21 7 9.8422 -3.3777 12.3149 22 6 10.3696 -3.8282 13.4664 23 7 11.6469 -3.5448 13.4661 24 6 11.9687 -2.9093 12.3402 25 7 10.8967 -2.7832 11.6028 26 6 8.1647 -1.6609 10.1009 27 6 4.8417 0.6266 5.8912 28 8 5.3172 1.8611 6.1920 29 6 4.1412 0.4194 4.7171 30 8 2.6210 -0.1449 2.2337 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5137 -0.8900 33 1 1.5878 2.4586 -1.2242 34 1 1.5614 2.4678 1.2086 35 1 1.2376 -2.7412 0.8978 36 1 2.4301 -3.2076 3.2685 37 1 3.4956 -2.8998 5.0600 38 1 4.7405 -2.5437 7.1286 39 1 5.6699 -2.1450 8.6498 40 1 5.7853 -1.6584 12.0086 41 1 6.0356 -3.0184 10.8311 42 1 7.8507 -3.9148 12.6948 43 1 8.3785 -4.1164 11.0069 44 1 9.8332 -4.3373 14.2534 45 1 12.9552 -2.5561 12.0788 46 1 8.2726 -2.4995 9.4129 47 1 8.9583 -0.9211 9.9959 48 1 6.2106 2.0296 5.8622 49 1 3.9715 1.2401 4.0359 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:58 Heat of formation + Delta-G solvation = 70.236034 kcal Electronic energy + Delta-G solvation = -34953.536539 eV Core-core repulsion = 30045.853192 eV Total energy + Delta-G solvation = -4907.683346 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.72539 -42.97711 -41.66074 -40.57217 -39.04649 -38.15957 -37.83793 -35.48499 -34.40776 -34.10576 -33.16593 -32.11243 -31.35954 -30.60540 -29.12495 -27.11375 -26.89605 -25.06200 -24.10958 -23.94003 -22.88350 -22.64083 -22.23199 -21.75160 -21.29920 -20.93384 -19.62988 -18.87572 -18.69068 -18.39971 -18.01578 -17.53459 -17.07046 -16.87207 -16.67553 -16.60418 -16.15883 -16.03546 -15.95539 -15.84929 -15.68761 -15.40608 -15.04615 -14.85445 -14.61365 -14.47610 -14.22258 -14.06127 -14.00649 -13.80397 -13.64452 -13.59898 -13.53323 -13.17677 -12.96204 -12.84026 -12.73701 -12.34035 -12.07903 -12.05231 -11.82569 -11.53592 -11.12638 -10.91782 -10.79782 -10.78481 -10.71197 -10.60442 -10.59107 -10.07868 -9.96627 -9.01036 -5.04119 -0.79249 0.10038 0.63859 0.69385 1.06960 1.31488 1.33783 1.44027 1.67140 1.91475 1.97147 2.05258 2.07603 2.62502 2.98470 3.09676 3.17373 3.26494 3.40774 3.42933 3.46842 3.52759 3.59743 3.65143 3.75787 3.83614 3.89599 3.93946 3.95827 3.99413 4.09112 4.10967 4.19545 4.36274 4.39469 4.47728 4.54002 4.57482 4.61118 4.67245 4.77648 4.80621 4.83668 4.98085 5.00434 5.05952 5.10428 5.17063 5.31578 5.38297 5.43749 5.47894 5.50644 5.82692 5.98954 6.22432 6.42194 6.68813 7.16234 7.20387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.038 4.038 3 Si 0.694 3.306 4 C 0.004 3.996 5 C -0.172 4.172 6 C -0.176 4.176 7 C 0.023 3.977 8 C 0.032 3.968 9 C -0.116 4.116 10 C -0.064 4.064 11 C -0.166 4.166 12 C 0.560 3.440 13 O -0.516 6.516 14 N -0.719 5.719 15 C 0.124 3.876 16 H 0.118 0.882 17 C -0.137 4.137 18 C -0.120 4.120 19 H 0.101 0.899 20 C 0.140 3.860 21 N -0.379 5.379 22 C 0.252 3.748 23 N -0.547 5.547 24 C 0.197 3.803 25 N -0.312 5.312 26 C -0.135 4.135 27 C 0.179 3.821 28 O -0.474 6.474 29 C -0.141 4.141 30 O -0.161 6.161 31 H 0.388 0.612 32 H 0.099 0.901 33 H -0.251 1.251 34 H -0.250 1.250 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.399 0.601 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.218 0.782 45 H 0.216 0.784 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.399 0.601 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -6.006 -2.585 6.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.147 4.147 3 Si 0.593 3.407 4 C -0.047 4.047 5 C -0.191 4.191 6 C -0.195 4.195 7 C -0.026 4.026 8 C 0.032 3.968 9 C -0.134 4.134 10 C -0.083 4.083 11 C -0.170 4.170 12 C 0.347 3.653 13 O -0.392 6.392 14 N -0.371 5.371 15 C 0.019 3.981 16 H 0.136 0.864 17 C -0.176 4.176 18 C -0.139 4.139 19 H 0.119 0.881 20 C 0.018 3.982 21 N -0.170 5.170 22 C -0.045 4.045 23 N -0.274 5.274 24 C -0.106 4.106 25 N -0.140 5.140 26 C -0.173 4.173 27 C 0.132 3.868 28 O -0.286 6.286 29 C -0.159 4.159 30 O -0.058 6.058 31 H 0.238 0.762 32 H 0.116 0.884 33 H -0.175 1.175 34 H -0.174 1.174 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.235 0.765 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.234 0.766 45 H 0.233 0.767 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.258 0.742 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.530 -4.007 -2.014 4.738 hybrid contribution -1.152 -1.054 -0.708 1.714 sum -2.682 -5.061 -2.722 6.341 Atomic orbital electron populations 1.86569 1.16859 1.80403 1.50355 1.23807 0.84945 1.12202 0.93724 0.94535 0.91483 0.73522 0.81172 1.21357 0.99995 0.92452 0.90852 1.21537 1.03727 0.95813 0.98019 1.21888 1.01870 0.98404 0.97316 1.20289 1.04026 0.87469 0.90862 1.17749 0.95410 0.93745 0.89941 1.20695 1.00198 0.98755 0.93797 1.20794 0.95614 0.95434 0.96455 1.20486 1.04785 0.94336 0.97409 1.18015 0.79446 0.84524 0.83274 1.90852 1.49826 1.23494 1.75059 1.45870 1.57677 1.12071 1.21448 1.22506 0.91532 1.00723 0.83349 0.86408 1.23386 0.95480 1.00016 0.98744 1.22629 0.96067 0.96375 0.98848 0.88108 1.21867 0.75796 0.98159 1.02337 1.50587 1.09133 1.42829 1.14473 1.26132 0.90742 0.97112 0.90521 1.70563 1.12430 1.20480 1.23929 1.26075 0.99028 0.96902 0.88616 1.78093 0.95351 1.20212 1.20312 1.23464 0.97398 1.01424 0.95048 1.18283 0.93847 0.84118 0.90507 1.84774 1.36353 1.27552 1.79898 1.21598 1.00241 0.97105 0.96980 1.83924 1.58014 1.37662 1.26199 0.76225 0.88371 1.17523 1.17402 0.82713 0.82547 0.84328 0.84674 0.76537 0.89891 0.89014 0.87694 0.89073 0.76564 0.76725 0.89502 0.90359 0.74199 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.24 12.86 -35.23 -0.45 -0.69 16 2 C -0.04 0.02 2.97 36.00 0.11 0.13 16 3 Si 0.69 -0.53 32.11 -169.99 -5.46 -5.99 16 4 C 0.00 0.01 6.24 -35.52 -0.22 -0.22 16 5 C -0.17 -0.18 10.78 -39.82 -0.43 -0.61 16 6 C -0.18 -0.07 10.26 -39.38 -0.40 -0.48 16 7 C 0.02 0.03 7.02 -36.54 -0.26 -0.22 16 8 C 0.03 0.02 5.87 -104.95 -0.62 -0.60 16 9 C -0.12 0.17 9.48 -39.61 -0.38 -0.20 16 10 C -0.06 0.12 9.47 -39.62 -0.38 -0.26 16 11 C -0.17 -0.16 5.89 -104.78 -0.62 -0.77 16 12 C 0.56 1.20 7.75 -12.58 -0.10 1.10 16 13 O -0.52 -3.09 14.74 -16.71 -0.25 -3.33 16 14 N -0.72 0.92 5.30 -54.13 -0.29 0.63 16 15 C 0.12 -0.16 4.24 -67.12 -0.28 -0.44 16 16 H 0.12 0.12 7.47 -51.93 -0.39 -0.27 16 17 C -0.14 0.57 7.39 -25.92 -0.19 0.38 16 18 C -0.12 0.35 3.85 -89.81 -0.35 0.01 16 19 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 20 C 0.14 -0.52 6.39 -4.04 -0.03 -0.55 16 21 N -0.38 0.10 3.69 -62.63 -0.23 -0.14 16 22 C 0.25 -0.08 12.63 -90.65 -1.14 -1.23 16 23 N -0.55 -1.50 11.19 -15.83 -0.18 -1.68 16 24 C 0.20 0.42 13.03 -91.82 -1.20 -0.78 16 25 N -0.31 -0.75 12.57 29.29 0.37 -0.39 16 26 C -0.13 0.18 7.43 -25.92 -0.19 -0.02 16 27 C 0.18 0.35 6.71 -38.75 -0.26 0.09 16 28 O -0.47 -1.31 11.56 -40.68 -0.47 -1.78 16 29 C -0.14 -0.17 9.65 -39.06 -0.38 -0.55 16 30 O -0.16 -0.38 8.79 4.71 0.04 -0.34 16 31 H 0.39 -1.56 8.74 45.56 0.40 -1.16 16 32 H 0.10 -0.31 7.96 -51.93 -0.41 -0.73 16 33 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 34 H -0.25 -0.84 7.11 56.52 0.40 -0.43 16 35 H 0.16 -0.07 8.06 -52.48 -0.42 -0.50 16 36 H 0.16 -0.35 7.24 -52.49 -0.38 -0.73 16 37 H 0.14 -0.54 6.95 -52.49 -0.36 -0.90 16 38 H 0.14 -0.70 6.38 -52.49 -0.33 -1.04 16 39 H 0.40 -1.69 6.73 -40.82 -0.27 -1.96 16 40 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 41 H 0.09 -0.54 8.08 -51.93 -0.42 -0.96 16 42 H 0.10 -0.68 8.09 -51.93 -0.42 -1.10 16 43 H 0.09 -0.38 7.84 -51.93 -0.41 -0.79 16 44 H 0.22 -1.03 8.06 -52.49 -0.42 -1.46 16 45 H 0.22 -0.17 8.06 -52.49 -0.42 -0.60 16 46 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 47 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 48 H 0.40 -0.43 9.06 45.56 0.41 -0.02 16 49 H 0.14 0.11 7.90 -52.49 -0.41 -0.31 16 LS Contribution 423.01 15.07 6.37 6.37 Total: 0.00 -14.39 423.01 -12.99 -27.38 By element: Atomic # 1 Polarization: -9.70 SS G_CDS: -5.15 Total: -14.85 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -7.30 Total: -5.22 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -0.33 Total: -1.56 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -1.13 Total: -6.14 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.46 Total: -5.99 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -14.39 -12.99 -27.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.616 kcal (2) G-P(sol) polarization free energy of solvation -14.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds