Wall clock time and date at job start Sun Mar 7 2021 00:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.46670 * 2 1 4 4 C 1.50695 * 109.47201 * 120.00264 * 2 1 3 5 5 C 1.34836 * 125.65603 * 64.99832 * 4 2 1 6 6 C 1.40796 * 107.05200 * 180.02562 * 5 4 2 7 7 C 1.36108 * 106.73260 * 0.02562 * 6 5 4 8 8 C 1.47574 * 125.94452 * 179.97438 * 7 6 5 9 9 C 1.39917 * 119.95299 * 359.97438 * 8 7 6 10 10 C 1.36427 * 120.27743 * 179.71494 * 9 8 7 11 11 C 1.39884 * 120.18292 * 0.56401 * 10 9 8 12 12 C 1.47292 * 120.04120 * 179.73984 * 11 10 9 13 13 O 1.21632 * 119.99331 * 179.72470 * 12 11 10 14 14 N 1.34774 * 120.00710 * 359.72123 * 12 11 10 15 15 C 1.46496 * 120.00099 * 180.02562 * 14 12 11 16 16 H 1.08994 * 112.91109 * 23.75176 * 15 14 12 17 17 C 1.53787 * 113.61210 * 155.00440 * 15 14 12 18 18 C 1.53779 * 87.07963 * 139.97940 * 17 15 14 19 19 H 1.09006 * 113.61280 * 89.11401 * 18 17 15 20 20 C 1.52998 * 113.61250 * 220.01477 * 18 17 15 21 21 N 1.46496 * 109.47269 * 185.00070 * 20 18 17 22 22 C 1.34434 * 126.82209 * 124.71271 * 21 20 18 23 23 N 1.30836 * 108.07295 * 179.89756 * 22 21 20 24 24 C 1.33234 * 109.83335 * 0.37465 * 23 22 21 25 25 N 1.30717 * 108.94663 * 359.77288 * 24 23 22 26 26 C 1.53779 * 87.08402 * 334.56577 * 18 17 15 27 27 C 1.40409 * 119.90484 * 359.46359 * 11 10 9 28 28 O 1.35674 * 120.13114 * 180.22901 * 27 11 10 29 29 C 1.38271 * 119.72566 * 0.25224 * 27 11 10 30 30 O 1.34238 * 125.65174 * 245.35853 * 4 2 1 31 31 H 0.96696 * 114.00167 * 60.00502 * 1 2 3 32 32 H 1.08996 * 109.47151 * 240.00467 * 2 1 3 33 33 H 1.48494 * 110.00223 * 298.68018 * 3 2 1 34 34 H 1.48505 * 109.99825 * 60.00333 * 3 2 1 35 35 H 1.08004 * 126.47496 * 0.06435 * 5 4 2 36 36 H 1.07991 * 126.63620 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.86403 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.90775 * 180.30322 * 10 9 8 39 39 H 0.97002 * 119.99411 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61028 * 254.52900 * 17 15 14 41 41 H 1.08998 * 113.61447 * 25.34434 * 17 15 14 42 42 H 1.09007 * 109.47269 * 305.00322 * 20 18 17 43 43 H 1.08998 * 109.47235 * 64.99931 * 20 18 17 44 44 H 1.07992 * 125.96396 * 0.03426 * 22 21 20 45 45 H 1.07999 * 125.53091 * 179.79714 * 24 23 22 46 46 H 1.09002 * 113.61557 * 270.88569 * 26 18 17 47 47 H 1.09004 * 113.61501 * 139.97990 * 26 18 17 48 48 H 0.96708 * 113.99874 * 90.00326 * 28 27 11 49 49 H 1.07999 * 120.08708 * 180.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7568 -2.0180 1.5093 6 6 2.3801 -2.2628 2.7478 7 6 2.9066 -1.0781 3.1625 8 6 3.6545 -0.8536 4.4146 9 6 3.8744 -1.9167 5.2973 10 6 4.5700 -1.7178 6.4539 11 6 5.0583 -0.4459 6.7711 12 6 5.8040 -0.2335 8.0234 13 8 6.2325 0.8718 8.2959 14 7 6.0114 -1.2636 8.8674 15 6 6.7526 -1.0520 10.1132 16 1 6.7267 -0.0163 10.4517 17 6 6.4091 -2.0689 11.2146 18 6 7.9084 -2.0871 11.5560 19 1 8.1984 -1.3342 12.2890 20 6 8.4440 -3.4808 11.8900 21 7 9.8422 -3.3777 12.3149 22 6 10.3696 -3.8282 13.4664 23 7 11.6469 -3.5448 13.4661 24 6 11.9687 -2.9093 12.3402 25 7 10.8967 -2.7832 11.6028 26 6 8.1647 -1.6609 10.1009 27 6 4.8417 0.6266 5.8912 28 8 5.3172 1.8611 6.1920 29 6 4.1412 0.4194 4.7171 30 8 2.6210 -0.1449 2.2337 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5137 -0.8900 33 1 1.5878 2.4586 -1.2242 34 1 1.5614 2.4678 1.2086 35 1 1.2376 -2.7412 0.8978 36 1 2.4301 -3.2076 3.2685 37 1 3.4956 -2.8998 5.0600 38 1 4.7405 -2.5437 7.1286 39 1 5.6699 -2.1450 8.6498 40 1 5.7853 -1.6584 12.0086 41 1 6.0356 -3.0184 10.8311 42 1 7.8507 -3.9148 12.6948 43 1 8.3785 -4.1164 11.0069 44 1 9.8332 -4.3373 14.2534 45 1 12.9552 -2.5561 12.0788 46 1 8.2726 -2.4995 9.4129 47 1 8.9583 -0.9211 9.9959 48 1 6.2106 2.0296 5.8622 49 1 3.9715 1.2401 4.0359 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:56 Heat of formation + Delta-G solvation = 67.594942 kcal Electronic energy + Delta-G solvation = -34953.651065 eV Core-core repulsion = 30045.853192 eV Total energy + Delta-G solvation = -4907.797873 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.74698 -42.95018 -41.69203 -40.49785 -39.10487 -38.14653 -37.88658 -35.47015 -34.41812 -34.11751 -33.14035 -32.13006 -31.35796 -30.58970 -28.99788 -27.09571 -26.70637 -25.02983 -24.07621 -23.91315 -22.83444 -22.63243 -22.22276 -21.78345 -21.31095 -20.79326 -19.65175 -18.83450 -18.68734 -18.30944 -18.05130 -17.50921 -17.11671 -16.76274 -16.65093 -16.62953 -16.15577 -16.08079 -15.94554 -15.85394 -15.63319 -15.41712 -15.00197 -14.76421 -14.48559 -14.44613 -14.22989 -14.11852 -13.98372 -13.66378 -13.56617 -13.52693 -13.42551 -13.13914 -12.88316 -12.86515 -12.70764 -12.21204 -12.17540 -11.94701 -11.85661 -11.39176 -11.13989 -10.97004 -10.90481 -10.78004 -10.76350 -10.57534 -10.53685 -10.07640 -9.96153 -9.01711 -5.01909 -0.80543 0.13351 0.61573 0.73515 1.10281 1.33955 1.43627 1.49371 1.68429 1.88778 1.91132 2.03732 2.07627 2.63018 2.99487 3.23784 3.33102 3.45366 3.52197 3.56634 3.60247 3.63091 3.71077 3.78346 3.80210 3.96363 3.98647 4.00108 4.14854 4.18341 4.23031 4.30816 4.35306 4.40666 4.59489 4.63119 4.68882 4.73084 4.73469 4.79942 4.82953 4.89121 4.99267 5.05487 5.06728 5.09430 5.17864 5.21683 5.37004 5.43214 5.48519 5.52023 5.56465 5.97747 5.98727 6.48190 6.48594 6.67442 7.16683 7.17454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.037 4.037 3 Si 0.754 3.246 4 C -0.017 4.017 5 C -0.181 4.181 6 C -0.169 4.169 7 C 0.002 3.998 8 C 0.025 3.975 9 C -0.108 4.108 10 C -0.048 4.048 11 C -0.180 4.180 12 C 0.555 3.445 13 O -0.568 6.568 14 N -0.699 5.699 15 C 0.113 3.887 16 H 0.086 0.914 17 C -0.113 4.113 18 C -0.112 4.112 19 H 0.081 0.919 20 C 0.135 3.865 21 N -0.378 5.378 22 C 0.256 3.744 23 N -0.587 5.587 24 C 0.183 3.817 25 N -0.344 5.344 26 C -0.134 4.134 27 C 0.158 3.842 28 O -0.497 6.497 29 C -0.156 4.156 30 O -0.181 6.181 31 H 0.406 0.594 32 H 0.132 0.868 33 H -0.260 1.260 34 H -0.316 1.316 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.417 0.583 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.260 0.740 45 H 0.228 0.772 46 H 0.096 0.904 47 H 0.042 0.958 48 H 0.408 0.592 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -10.099 -2.382 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.146 4.146 3 Si 0.659 3.341 4 C -0.067 4.067 5 C -0.200 4.200 6 C -0.188 4.188 7 C -0.047 4.047 8 C 0.025 3.975 9 C -0.126 4.126 10 C -0.067 4.067 11 C -0.183 4.183 12 C 0.343 3.657 13 O -0.448 6.448 14 N -0.352 5.352 15 C 0.008 3.992 16 H 0.104 0.896 17 C -0.151 4.151 18 C -0.132 4.132 19 H 0.100 0.900 20 C 0.015 3.985 21 N -0.169 5.169 22 C -0.040 4.040 23 N -0.315 5.315 24 C -0.120 4.120 25 N -0.172 5.172 26 C -0.173 4.173 27 C 0.112 3.888 28 O -0.310 6.310 29 C -0.174 4.174 30 O -0.079 6.079 31 H 0.258 0.742 32 H 0.150 0.850 33 H -0.185 1.185 34 H -0.244 1.244 35 H 0.187 0.813 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.194 0.806 39 H 0.256 0.744 40 H 0.107 0.893 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.121 0.879 44 H 0.275 0.725 45 H 0.244 0.756 46 H 0.115 0.885 47 H 0.061 0.939 48 H 0.268 0.732 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.999 -8.151 -1.846 8.880 hybrid contribution -0.758 0.265 -0.760 1.106 sum -3.757 -7.887 -2.606 9.116 Atomic orbital electron populations 1.86518 1.17402 1.80784 1.51889 1.23937 0.84588 1.11858 0.94239 0.93817 0.90706 0.72569 0.77037 1.21864 1.00254 0.93255 0.91299 1.21847 1.03751 0.95812 0.98548 1.22262 1.00563 0.98974 0.96992 1.20621 1.04939 0.87951 0.91194 1.17971 0.95287 0.93985 0.90269 1.21078 0.99205 0.99382 0.92944 1.21195 0.93728 0.95038 0.96704 1.20544 1.05571 0.95396 0.96827 1.18306 0.79068 0.84433 0.83883 1.90825 1.52106 1.25631 1.76233 1.45725 1.56600 1.12147 1.20687 1.22506 0.92123 1.00185 0.84359 0.89606 1.23313 0.94457 1.00169 0.97165 1.22491 0.97123 0.96676 0.96905 0.90022 1.22233 0.74326 0.97532 1.04456 1.50784 1.09737 1.42107 1.14283 1.26915 0.90167 0.95981 0.90950 1.70536 1.14442 1.21886 1.24633 1.26420 0.99748 0.97079 0.88764 1.78012 0.96233 1.21374 1.21602 1.23435 0.96106 1.00823 0.96905 1.18512 0.94724 0.84236 0.91333 1.84727 1.37277 1.28657 1.80341 1.21553 1.01200 0.97707 0.96960 1.83918 1.58543 1.38601 1.26824 0.74199 0.85032 1.18484 1.24406 0.81254 0.79611 0.80988 0.80585 0.74387 0.89316 0.85747 0.83764 0.87887 0.72474 0.75562 0.88536 0.93859 0.73181 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.37 12.86 -148.98 -1.92 -2.29 16 2 C -0.04 0.05 2.97 71.23 0.21 0.26 16 3 Si 0.75 -0.13 32.11 68.60 2.20 2.08 16 4 C -0.02 -0.06 6.24 24.90 0.16 0.10 16 5 C -0.18 -0.19 10.78 22.11 0.24 0.04 16 6 C -0.17 0.11 10.26 22.40 0.23 0.34 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 9 C -0.11 0.55 9.48 22.25 0.21 0.76 16 10 C -0.05 0.28 9.47 22.25 0.21 0.49 16 11 C -0.18 -0.45 5.89 -19.97 -0.12 -0.57 16 12 C 0.55 3.08 7.75 86.62 0.67 3.75 16 13 O -0.57 -8.63 14.74 16.86 0.25 -8.38 16 14 N -0.70 2.13 5.30 -443.42 -2.35 -0.22 16 15 C 0.11 -0.24 4.24 45.52 0.19 -0.05 16 16 H 0.09 0.41 7.47 -2.39 -0.02 0.39 16 17 C -0.11 1.17 7.39 31.12 0.23 1.40 16 18 C -0.11 0.74 3.85 -10.27 -0.04 0.70 16 19 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 20 C 0.13 -1.32 6.39 86.38 0.55 -0.77 16 21 N -0.38 0.53 3.69 -352.07 -1.30 -0.77 16 22 C 0.26 -0.47 12.63 180.36 2.28 1.80 16 23 N -0.59 -3.37 11.19 -204.00 -2.28 -5.66 16 24 C 0.18 1.00 13.03 180.77 2.36 3.35 16 25 N -0.34 -1.95 12.57 -61.25 -0.77 -2.72 16 26 C -0.13 0.26 7.43 31.12 0.23 0.49 16 27 C 0.16 1.01 6.71 22.81 0.15 1.16 16 28 O -0.50 -4.61 11.56 -68.92 -0.80 -5.40 16 29 C -0.16 -0.75 9.65 22.61 0.22 -0.53 16 30 O -0.18 -1.10 8.79 -6.06 -0.05 -1.16 16 31 H 0.41 -3.42 8.74 -74.06 -0.65 -4.07 16 32 H 0.13 -1.06 7.96 -2.39 -0.02 -1.08 16 33 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 34 H -0.32 -3.40 7.11 99.48 0.71 -2.69 16 35 H 0.17 -0.45 8.06 -2.91 -0.02 -0.47 16 36 H 0.19 -1.45 7.24 -2.92 -0.02 -1.47 16 37 H 0.17 -2.05 6.95 -2.91 -0.02 -2.07 16 38 H 0.18 -2.58 6.38 -2.91 -0.02 -2.60 16 39 H 0.42 -4.64 6.73 -92.71 -0.62 -5.27 16 40 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.12 -2.04 8.08 -2.39 -0.02 -2.06 16 42 H 0.14 -2.51 8.09 -2.38 -0.02 -2.53 16 43 H 0.10 -1.19 7.84 -2.39 -0.02 -1.21 16 44 H 0.26 -3.20 8.06 -2.91 -0.02 -3.22 16 45 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 46 H 0.10 -0.38 7.90 -2.39 -0.02 -0.40 16 47 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.41 0.85 9.06 -74.05 -0.67 0.18 16 49 H 0.13 0.73 7.90 -2.91 -0.02 0.71 16 Total: 0.00 -40.19 423.01 0.16 -40.03 By element: Atomic # 1 Polarization: -27.48 SS G_CDS: -0.85 Total: -28.33 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 8.03 Total: 12.82 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -6.70 Total: -9.37 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -2.52 Total: -17.23 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.20 Total: 2.08 kcal Total: -40.19 0.16 -40.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.623 kcal (2) G-P(sol) polarization free energy of solvation -40.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds