Wall clock time and date at job start Sun Mar 7 2021 00:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39286 * 121.03251 * 2 1 4 4 C 1.46497 * 134.19597 * 359.97127 * 3 2 1 5 5 C 1.50695 * 126.60179 * 0.02939 * 4 3 2 6 6 O 1.42903 * 109.47131 * 75.00197 * 5 4 3 7 7 Si 1.86306 * 109.47356 * 195.00222 * 5 4 3 8 8 C 1.34184 * 106.79952 * 180.02562 * 4 3 2 9 9 N 1.36946 * 109.95054 * 0.02562 * 8 4 3 10 10 C 1.37158 * 110.11726 * 359.97438 * 9 8 4 11 11 N 1.32815 * 132.96749 * 179.97438 * 10 9 8 12 12 C 1.31313 * 121.89210 * 180.02562 * 11 10 9 13 13 C 1.39756 * 121.03144 * 179.73016 * 2 1 3 14 14 C 1.47664 * 120.45162 * 359.97438 * 13 2 1 15 15 O 1.21574 * 120.00310 * 5.86276 * 14 13 2 16 16 N 1.34779 * 119.99996 * 185.86244 * 14 13 2 17 17 C 1.46497 * 120.00173 * 180.02562 * 16 14 13 18 18 H 1.08996 * 112.84730 * 23.80030 * 17 16 14 19 19 C 1.53776 * 113.61624 * 155.00071 * 17 16 14 20 20 C 1.53779 * 87.08105 * 139.97654 * 19 17 16 21 21 H 1.09000 * 113.61143 * 89.11924 * 20 19 17 22 22 C 1.52997 * 113.61698 * 219.93209 * 20 19 17 23 23 N 1.46503 * 109.47477 * 185.00509 * 22 20 19 24 24 C 1.34424 * 126.82574 * 124.70952 * 23 22 20 25 25 N 1.30829 * 108.07862 * 179.89464 * 24 23 22 26 26 C 1.33244 * 109.82940 * 0.38405 * 25 24 23 27 27 N 1.30719 * 108.94131 * 359.76016 * 26 25 24 28 28 C 1.53780 * 87.08531 * 334.56923 * 20 19 17 29 29 H 1.08999 * 109.47638 * 96.24772 * 1 2 3 30 30 H 1.08999 * 109.47120 * 336.25168 * 1 2 3 31 31 H 1.09001 * 109.46926 * 216.25259 * 1 2 3 32 32 H 1.08993 * 109.47500 * 315.00206 * 5 4 3 33 33 H 0.96694 * 113.99978 * 179.97438 * 6 5 4 34 34 H 1.48496 * 109.99840 * 300.00219 * 7 5 4 35 35 H 1.48498 * 109.99896 * 61.32094 * 7 5 4 36 36 H 1.07998 * 125.02105 * 180.02562 * 8 4 3 37 37 H 0.97005 * 124.93652 * 180.02562 * 9 8 4 38 38 H 1.07990 * 119.31038 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99758 * 359.97438 * 16 14 13 40 40 H 1.08999 * 113.61637 * 254.53308 * 19 17 16 41 41 H 1.09000 * 113.61171 * 25.34652 * 19 17 16 42 42 H 1.09002 * 109.47331 * 305.00824 * 22 20 19 43 43 H 1.08999 * 109.47073 * 65.00262 * 22 20 19 44 44 H 1.08007 * 125.95771 * 0.04276 * 24 23 22 45 45 H 1.07997 * 125.52773 * 179.72359 * 26 25 24 46 46 H 1.08999 * 113.61096 * 270.88229 * 28 20 19 47 47 H 1.08998 * 113.61540 * 139.97544 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6101 -0.0005 5 6 0.4526 3.1704 -0.0007 6 8 -0.1192 3.0244 1.3008 7 14 0.5069 4.9762 -0.4560 8 6 2.9947 3.3126 -0.0008 9 7 4.0668 2.4605 -0.0011 10 6 3.6347 1.1587 -0.0004 11 7 4.2720 -0.0066 -0.0008 12 6 3.6266 -1.1502 -0.0004 13 6 2.2274 -1.1975 0.0056 14 6 1.5224 -2.4950 0.0123 15 8 0.3119 -2.5297 -0.0946 16 7 2.2210 -3.6409 0.1369 17 6 1.5217 -4.9281 0.1430 18 1 0.5527 -4.8857 -0.3543 19 6 2.3972 -6.1070 -0.3133 20 6 1.7317 -6.9308 0.8016 21 1 0.8195 -7.4369 0.4854 22 6 2.6995 -7.8575 1.5401 23 7 1.9542 -8.6812 2.4952 24 6 1.9498 -10.0233 2.5702 25 7 1.1628 -10.3724 3.5553 26 6 0.6426 -9.2860 4.1249 27 7 1.0975 -8.2256 3.5106 28 6 1.4774 -5.5986 1.5263 29 1 -0.3634 -0.1118 -1.0215 30 1 -0.3633 0.9406 0.4139 31 1 -0.3633 -0.8287 0.6077 32 1 -0.1550 2.6307 -0.7270 33 1 -1.0212 3.3649 1.3746 34 1 1.3323 5.7231 0.5267 35 1 1.0701 5.1391 -1.8204 36 1 3.0597 4.3906 -0.0008 37 1 4.9965 2.7374 -0.0009 38 1 4.1869 -2.0734 -0.0012 39 1 3.1869 -3.6132 0.2219 40 1 2.1635 -6.4616 -1.3172 41 1 3.4640 -5.9437 -0.1599 42 1 3.2051 -8.5023 0.8213 43 1 3.4382 -7.2600 2.0745 44 1 2.5017 -10.6961 1.9304 45 1 -0.0439 -9.2821 4.9586 46 1 2.2925 -5.2969 2.1841 47 1 0.5010 -5.5427 2.0076 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:03 Heat of formation + Delta-G solvation = 136.166016 kcal Electronic energy + Delta-G solvation = -32295.455443 eV Core-core repulsion = 27869.832119 eV Total energy + Delta-G solvation = -4425.623324 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.95658 -42.85862 -41.27469 -39.86777 -38.55975 -37.75129 -35.64200 -34.91260 -34.08099 -32.09171 -32.06711 -31.08635 -29.16503 -28.66030 -26.86273 -26.52375 -25.16999 -24.31509 -23.66365 -22.85770 -22.40099 -21.69080 -20.91623 -20.32680 -19.26303 -18.68605 -18.40107 -18.35058 -17.66467 -17.32903 -16.83305 -16.70642 -16.43613 -16.04669 -15.84627 -15.71749 -15.45698 -15.31564 -15.17836 -14.98467 -14.72154 -14.60855 -14.19022 -13.96745 -13.84993 -13.69735 -13.60010 -13.54087 -13.30364 -13.11501 -12.92181 -12.85951 -12.62395 -12.24438 -12.00907 -11.99321 -11.50424 -11.08017 -10.96659 -10.89011 -10.69539 -10.59738 -10.37466 -10.19264 -10.06270 -9.60282 -9.16644 -5.08617 -0.24589 -0.07407 0.71891 1.20821 1.31099 1.34133 1.56846 1.60163 1.87610 1.90606 2.08889 2.10352 2.82958 3.12662 3.22490 3.31086 3.34562 3.42940 3.47848 3.51615 3.64559 3.68117 3.75091 3.82078 3.86894 3.97922 4.01671 4.04153 4.09804 4.13104 4.27261 4.42056 4.46344 4.52417 4.59283 4.63211 4.65615 4.74273 4.84094 4.92836 5.03135 5.05049 5.10537 5.18418 5.33844 5.37322 5.47262 5.53004 5.57339 5.75366 5.85105 6.06753 6.45920 6.63967 6.83072 7.18527 7.23523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.087 3.913 3 C -0.148 4.148 4 C -0.132 4.132 5 C -0.041 4.041 6 O -0.544 6.544 7 Si 0.687 3.313 8 C 0.064 3.936 9 N -0.569 5.569 10 C 0.309 3.691 11 N -0.503 5.503 12 C 0.181 3.819 13 C -0.235 4.235 14 C 0.574 3.426 15 O -0.528 6.528 16 N -0.719 5.719 17 C 0.125 3.875 18 H 0.119 0.881 19 C -0.138 4.138 20 C -0.119 4.119 21 H 0.100 0.900 22 C 0.140 3.860 23 N -0.379 5.379 24 C 0.251 3.749 25 N -0.547 5.547 26 C 0.196 3.804 27 N -0.312 5.312 28 C -0.135 4.135 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.381 0.619 34 H -0.251 1.251 35 H -0.255 1.255 36 H 0.177 0.823 37 H 0.426 0.574 38 H 0.163 0.837 39 H 0.399 0.601 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.218 0.782 45 H 0.216 0.784 46 H 0.087 0.913 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 2.319 -3.461 4.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.079 3.921 3 C -0.155 4.155 4 C -0.139 4.139 5 C -0.152 4.152 6 O -0.350 6.350 7 Si 0.588 3.412 8 C -0.062 4.062 9 N -0.175 5.175 10 C 0.076 3.924 11 N -0.216 5.216 12 C 0.012 3.988 13 C -0.242 4.242 14 C 0.362 3.638 15 O -0.406 6.406 16 N -0.370 5.370 17 C 0.020 3.980 18 H 0.137 0.863 19 C -0.176 4.176 20 C -0.139 4.139 21 H 0.119 0.881 22 C 0.018 3.982 23 N -0.170 5.170 24 C -0.045 4.045 25 N -0.274 5.274 26 C -0.107 4.107 27 N -0.139 5.139 28 C -0.174 4.174 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.229 0.771 34 H -0.176 1.176 35 H -0.179 1.179 36 H 0.194 0.806 37 H 0.265 0.735 38 H 0.179 0.821 39 H 0.234 0.766 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.234 0.766 45 H 0.233 0.767 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.790 3.340 -3.405 5.526 hybrid contribution 0.744 -0.483 -0.136 0.898 sum 3.534 2.857 -3.542 5.761 Atomic orbital electron populations 1.21256 0.88793 1.04904 1.03809 1.19912 0.97238 0.89061 0.85926 1.19452 0.92811 0.93380 1.09820 1.19540 0.93180 0.90660 1.10564 1.24038 0.91409 1.10906 0.88832 1.86543 1.33838 1.85688 1.28929 0.94929 0.90407 0.76090 0.79815 1.21626 0.85362 0.95612 1.03631 1.41462 1.09490 1.02731 1.63780 1.18465 0.89307 0.85833 0.98840 1.66434 1.40518 0.95952 1.18716 1.22500 0.90108 0.94395 0.91796 1.20438 0.94748 0.93799 1.15206 1.17881 0.86860 0.83301 0.75750 1.90752 1.13514 1.86944 1.49344 1.45854 1.10459 1.05508 1.75166 1.22501 0.97527 0.80523 0.97452 0.86345 1.23388 1.00076 0.95109 0.99066 1.22625 0.99344 0.95038 0.96902 0.88135 1.21873 0.93022 0.93933 0.89371 1.50587 1.34903 1.06101 1.25413 1.26126 0.97279 0.84282 0.96862 1.70563 1.14683 1.31458 1.10700 1.26077 0.99520 0.84945 1.00127 1.78098 1.09779 1.23399 1.02632 1.23466 1.03732 0.93559 0.96635 0.90011 0.90095 0.88181 0.90652 0.77105 1.17588 1.17895 0.80578 0.73544 0.82053 0.76554 0.89897 0.88981 0.87701 0.89064 0.76577 0.76735 0.89483 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.37 8.47 36.00 0.31 -0.06 16 2 C 0.09 0.32 5.98 -103.67 -0.62 -0.30 16 3 C -0.15 -0.57 6.16 -105.13 -0.65 -1.22 16 4 C -0.13 -0.30 5.61 -102.73 -0.58 -0.88 16 5 C -0.04 0.01 1.87 36.00 0.07 0.08 16 6 O -0.54 0.02 11.64 -35.23 -0.41 -0.39 16 7 Si 0.69 -1.44 30.80 -169.99 -5.24 -6.68 16 8 C 0.06 0.06 10.44 -16.70 -0.17 -0.12 16 9 N -0.57 -0.59 6.04 -12.12 -0.07 -0.66 16 10 C 0.31 1.09 8.42 -155.72 -1.31 -0.22 16 11 N -0.50 -1.64 10.37 -11.96 -0.12 -1.76 16 12 C 0.18 0.23 10.67 -17.11 -0.18 0.05 16 13 C -0.23 -0.60 5.89 -104.82 -0.62 -1.21 16 14 C 0.57 1.38 7.72 -12.41 -0.10 1.28 16 15 O -0.53 -2.80 13.08 5.30 0.07 -2.73 16 16 N -0.72 0.69 5.31 -54.02 -0.29 0.40 16 17 C 0.12 -0.16 4.24 -67.12 -0.28 -0.44 16 18 H 0.12 0.07 7.46 -51.93 -0.39 -0.31 16 19 C -0.14 0.55 7.39 -25.92 -0.19 0.36 16 20 C -0.12 0.33 3.85 -89.81 -0.35 -0.02 16 21 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 22 C 0.14 -0.47 6.39 -4.04 -0.03 -0.50 16 23 N -0.38 -0.03 3.69 -62.63 -0.23 -0.26 16 24 C 0.25 -0.02 12.63 -90.66 -1.14 -1.16 16 25 N -0.55 -1.63 11.19 -15.83 -0.18 -1.81 16 26 C 0.20 0.48 13.03 -91.81 -1.20 -0.72 16 27 N -0.31 -0.86 12.57 29.29 0.37 -0.49 16 28 C -0.14 0.13 7.43 -25.92 -0.19 -0.06 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.15 4.79 -51.93 -0.25 -0.09 16 31 H 0.10 0.42 5.93 -51.93 -0.31 0.11 16 32 H 0.08 -0.10 7.13 -51.93 -0.37 -0.47 16 33 H 0.38 -1.92 8.74 45.56 0.40 -1.53 16 34 H -0.25 -0.08 7.04 56.52 0.40 0.32 16 35 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 36 H 0.18 -0.26 6.31 -52.49 -0.33 -0.59 16 37 H 0.43 -0.75 8.96 -40.82 -0.37 -1.12 16 38 H 0.16 -0.43 6.43 -52.49 -0.34 -0.77 16 39 H 0.40 -1.45 6.80 -40.82 -0.28 -1.73 16 40 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 41 H 0.09 -0.52 8.08 -51.93 -0.42 -0.94 16 42 H 0.10 -0.65 8.09 -51.93 -0.42 -1.07 16 43 H 0.09 -0.34 7.85 -51.93 -0.41 -0.74 16 44 H 0.22 -0.98 8.06 -52.48 -0.42 -1.40 16 45 H 0.22 -0.11 8.06 -52.49 -0.42 -0.53 16 46 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 47 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 388.18 15.07 5.85 5.85 Total: 0.00 -13.49 388.18 -13.11 -26.59 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -5.62 Total: -12.94 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -7.23 Total: -5.14 kcal Atomic # 7 Polarization: -4.05 SS G_CDS: -0.52 Total: -4.58 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -0.34 Total: -3.11 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.24 Total: -6.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -13.49 -13.11 -26.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.759 kcal (2) G-P(sol) polarization free energy of solvation -13.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds