Wall clock time and date at job start Sun Mar 7 2021 00:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39286 * 121.03251 * 2 1 4 4 C 1.46497 * 134.19597 * 359.97127 * 3 2 1 5 5 C 1.50695 * 126.60179 * 0.02939 * 4 3 2 6 6 O 1.42903 * 109.47131 * 75.00197 * 5 4 3 7 7 Si 1.86306 * 109.47356 * 195.00222 * 5 4 3 8 8 C 1.34184 * 106.79952 * 180.02562 * 4 3 2 9 9 N 1.36946 * 109.95054 * 0.02562 * 8 4 3 10 10 C 1.37158 * 110.11726 * 359.97438 * 9 8 4 11 11 N 1.32815 * 132.96749 * 179.97438 * 10 9 8 12 12 C 1.31313 * 121.89210 * 180.02562 * 11 10 9 13 13 C 1.39756 * 121.03144 * 179.73016 * 2 1 3 14 14 C 1.47664 * 120.45162 * 359.97438 * 13 2 1 15 15 O 1.21574 * 120.00310 * 5.86276 * 14 13 2 16 16 N 1.34779 * 119.99996 * 185.86244 * 14 13 2 17 17 C 1.46497 * 120.00173 * 180.02562 * 16 14 13 18 18 H 1.08996 * 112.84730 * 23.80030 * 17 16 14 19 19 C 1.53776 * 113.61624 * 155.00071 * 17 16 14 20 20 C 1.53779 * 87.08105 * 139.97654 * 19 17 16 21 21 H 1.09000 * 113.61143 * 89.11924 * 20 19 17 22 22 C 1.52997 * 113.61698 * 219.93209 * 20 19 17 23 23 N 1.46503 * 109.47477 * 185.00509 * 22 20 19 24 24 C 1.34424 * 126.82574 * 124.70952 * 23 22 20 25 25 N 1.30829 * 108.07862 * 179.89464 * 24 23 22 26 26 C 1.33244 * 109.82940 * 0.38405 * 25 24 23 27 27 N 1.30719 * 108.94131 * 359.76016 * 26 25 24 28 28 C 1.53780 * 87.08531 * 334.56923 * 20 19 17 29 29 H 1.08999 * 109.47638 * 96.24772 * 1 2 3 30 30 H 1.08999 * 109.47120 * 336.25168 * 1 2 3 31 31 H 1.09001 * 109.46926 * 216.25259 * 1 2 3 32 32 H 1.08993 * 109.47500 * 315.00206 * 5 4 3 33 33 H 0.96694 * 113.99978 * 179.97438 * 6 5 4 34 34 H 1.48496 * 109.99840 * 300.00219 * 7 5 4 35 35 H 1.48498 * 109.99896 * 61.32094 * 7 5 4 36 36 H 1.07998 * 125.02105 * 180.02562 * 8 4 3 37 37 H 0.97005 * 124.93652 * 180.02562 * 9 8 4 38 38 H 1.07990 * 119.31038 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99758 * 359.97438 * 16 14 13 40 40 H 1.08999 * 113.61637 * 254.53308 * 19 17 16 41 41 H 1.09000 * 113.61171 * 25.34652 * 19 17 16 42 42 H 1.09002 * 109.47331 * 305.00824 * 22 20 19 43 43 H 1.08999 * 109.47073 * 65.00262 * 22 20 19 44 44 H 1.08007 * 125.95771 * 0.04276 * 24 23 22 45 45 H 1.07997 * 125.52773 * 179.72359 * 26 25 24 46 46 H 1.08999 * 113.61096 * 270.88229 * 28 20 19 47 47 H 1.08998 * 113.61540 * 139.97544 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6101 -0.0005 5 6 0.4526 3.1704 -0.0007 6 8 -0.1192 3.0244 1.3008 7 14 0.5069 4.9762 -0.4560 8 6 2.9947 3.3126 -0.0008 9 7 4.0668 2.4605 -0.0011 10 6 3.6347 1.1587 -0.0004 11 7 4.2720 -0.0066 -0.0008 12 6 3.6266 -1.1502 -0.0004 13 6 2.2274 -1.1975 0.0056 14 6 1.5224 -2.4950 0.0123 15 8 0.3119 -2.5297 -0.0946 16 7 2.2210 -3.6409 0.1369 17 6 1.5217 -4.9281 0.1430 18 1 0.5527 -4.8857 -0.3543 19 6 2.3972 -6.1070 -0.3133 20 6 1.7317 -6.9308 0.8016 21 1 0.8195 -7.4369 0.4854 22 6 2.6995 -7.8575 1.5401 23 7 1.9542 -8.6812 2.4952 24 6 1.9498 -10.0233 2.5702 25 7 1.1628 -10.3724 3.5553 26 6 0.6426 -9.2860 4.1249 27 7 1.0975 -8.2256 3.5106 28 6 1.4774 -5.5986 1.5263 29 1 -0.3634 -0.1118 -1.0215 30 1 -0.3633 0.9406 0.4139 31 1 -0.3633 -0.8287 0.6077 32 1 -0.1550 2.6307 -0.7270 33 1 -1.0212 3.3649 1.3746 34 1 1.3323 5.7231 0.5267 35 1 1.0701 5.1391 -1.8204 36 1 3.0597 4.3906 -0.0008 37 1 4.9965 2.7374 -0.0009 38 1 4.1869 -2.0734 -0.0012 39 1 3.1869 -3.6132 0.2219 40 1 2.1635 -6.4616 -1.3172 41 1 3.4640 -5.9437 -0.1599 42 1 3.2051 -8.5023 0.8213 43 1 3.4382 -7.2600 2.0745 44 1 2.5017 -10.6961 1.9304 45 1 -0.0439 -9.2821 4.9586 46 1 2.2925 -5.2969 2.1841 47 1 0.5010 -5.5427 2.0076 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:01 Heat of formation + Delta-G solvation = 133.701926 kcal Electronic energy + Delta-G solvation = -32295.562294 eV Core-core repulsion = 27869.832119 eV Total energy + Delta-G solvation = -4425.730175 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.98107 -42.94756 -41.32375 -39.86583 -38.67797 -37.72198 -35.66290 -35.03230 -34.11863 -32.15505 -32.13504 -31.18355 -29.18063 -28.72472 -26.70385 -26.53892 -25.22365 -24.39034 -23.74457 -22.83968 -22.41982 -21.77217 -20.82184 -20.37185 -19.37959 -18.74768 -18.34295 -18.30016 -17.68799 -17.38058 -16.81162 -16.72550 -16.57752 -16.06413 -15.89383 -15.76103 -15.45036 -15.32489 -15.16320 -14.98612 -14.76028 -14.54075 -14.24642 -14.09729 -13.84133 -13.76796 -13.60556 -13.43178 -13.39365 -13.13881 -13.02101 -12.84150 -12.61279 -12.14248 -11.97823 -11.89129 -11.38551 -11.25007 -11.12744 -10.95938 -10.77209 -10.57072 -10.50021 -10.17714 -10.12350 -9.72256 -9.27725 -4.92393 -0.43776 -0.19238 0.73078 1.22760 1.32699 1.48535 1.51203 1.71315 1.74563 1.97554 2.03045 2.06451 2.67057 3.20063 3.31666 3.33658 3.45242 3.47734 3.55880 3.59423 3.61668 3.72167 3.78544 3.83431 3.96847 4.00819 4.04406 4.14288 4.20184 4.24510 4.35694 4.41449 4.53476 4.59483 4.62859 4.69738 4.74076 4.75452 4.82895 4.91445 5.01167 5.06422 5.08045 5.15677 5.21013 5.32794 5.38001 5.47968 5.57038 5.60492 5.98118 6.05933 6.45910 6.70795 6.95567 7.14500 7.16024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.066 3.934 3 C -0.169 4.169 4 C -0.158 4.158 5 C -0.057 4.057 6 O -0.564 6.564 7 Si 0.786 3.214 8 C 0.066 3.934 9 N -0.561 5.561 10 C 0.288 3.712 11 N -0.516 5.516 12 C 0.185 3.815 13 C -0.242 4.242 14 C 0.571 3.429 15 O -0.565 6.565 16 N -0.701 5.701 17 C 0.117 3.883 18 H 0.094 0.906 19 C -0.113 4.113 20 C -0.111 4.111 21 H 0.085 0.915 22 C 0.134 3.866 23 N -0.379 5.379 24 C 0.256 3.744 25 N -0.586 5.586 26 C 0.182 3.818 27 N -0.344 5.344 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.401 0.599 34 H -0.280 1.280 35 H -0.287 1.287 36 H 0.199 0.801 37 H 0.437 0.563 38 H 0.201 0.799 39 H 0.415 0.585 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.260 0.740 45 H 0.228 0.772 46 H 0.091 0.909 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 2.029 -4.409 6.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 C -0.176 4.176 4 C -0.165 4.165 5 C -0.166 4.166 6 O -0.374 6.374 7 Si 0.689 3.311 8 C -0.061 4.061 9 N -0.168 5.168 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.016 3.984 13 C -0.249 4.249 14 C 0.359 3.641 15 O -0.446 6.446 16 N -0.352 5.352 17 C 0.012 3.988 18 H 0.112 0.888 19 C -0.152 4.152 20 C -0.131 4.131 21 H 0.103 0.897 22 C 0.014 3.986 23 N -0.169 5.169 24 C -0.040 4.040 25 N -0.314 5.314 26 C -0.120 4.120 27 N -0.173 5.173 28 C -0.176 4.176 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.252 0.748 34 H -0.207 1.207 35 H -0.214 1.214 36 H 0.216 0.784 37 H 0.278 0.722 38 H 0.217 0.783 39 H 0.253 0.747 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.118 0.882 44 H 0.275 0.725 45 H 0.244 0.756 46 H 0.109 0.891 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.759 3.036 -4.350 7.127 hybrid contribution 0.150 -0.407 0.162 0.463 sum 4.909 2.629 -4.189 6.968 Atomic orbital electron populations 1.21127 0.88849 1.04408 1.03392 1.20136 0.97571 0.89832 0.86725 1.19732 0.93325 0.94181 1.10384 1.20012 0.94902 0.90342 1.11248 1.24374 0.90410 1.12901 0.88878 1.86488 1.35551 1.86237 1.29100 0.93751 0.88708 0.72593 0.76057 1.22018 0.85010 0.96501 1.02541 1.41507 1.10251 1.02002 1.63060 1.18764 0.89598 0.86692 0.99423 1.66534 1.40763 0.96290 1.19325 1.23077 0.89774 0.95268 0.90288 1.20567 0.95484 0.93513 1.15319 1.17976 0.86490 0.84061 0.75543 1.90737 1.15097 1.87453 1.51294 1.45729 1.11154 1.04708 1.73654 1.22531 0.97608 0.81181 0.97492 0.88812 1.23313 1.00890 0.92092 0.98870 1.22490 0.99294 0.94237 0.97053 0.89706 1.22232 0.92484 0.94463 0.89454 1.50781 1.34414 1.06649 1.25086 1.26916 0.96234 0.84673 0.96185 1.70538 1.16264 1.32260 1.12343 1.26427 0.99925 0.84996 1.00683 1.78019 1.11054 1.24267 1.03927 1.23445 1.02061 0.95444 0.96641 0.90135 0.89428 0.89949 0.90175 0.74805 1.20692 1.21407 0.78406 0.72152 0.78261 0.74695 0.88947 0.86102 0.83718 0.88242 0.72456 0.75550 0.89059 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.47 71.23 0.60 -0.38 16 2 C 0.07 0.61 5.98 -19.25 -0.12 0.50 16 3 C -0.17 -1.54 6.16 -20.19 -0.12 -1.66 16 4 C -0.16 -0.87 5.61 -18.64 -0.10 -0.97 16 5 C -0.06 0.00 1.87 71.23 0.13 0.13 16 6 O -0.56 -0.27 11.64 -148.98 -1.73 -2.00 16 7 Si 0.79 -3.53 30.80 68.60 2.11 -1.42 16 8 C 0.07 0.14 10.44 82.97 0.87 1.01 16 9 N -0.56 -1.35 6.04 -192.25 -1.16 -2.51 16 10 C 0.29 2.26 8.42 134.02 1.13 3.38 16 11 N -0.52 -3.42 10.37 -191.76 -1.99 -5.41 16 12 C 0.18 0.44 10.67 85.20 0.91 1.35 16 13 C -0.24 -1.50 5.89 -19.99 -0.12 -1.62 16 14 C 0.57 3.52 7.72 86.73 0.67 4.19 16 15 O -0.57 -7.49 13.08 -3.95 -0.05 -7.55 16 16 N -0.70 1.36 5.31 -443.08 -2.35 -0.99 16 17 C 0.12 -0.24 4.24 45.52 0.19 -0.05 16 18 H 0.09 0.32 7.46 -2.39 -0.02 0.30 16 19 C -0.11 1.13 7.39 31.12 0.23 1.36 16 20 C -0.11 0.68 3.85 -10.27 -0.04 0.64 16 21 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 22 C 0.13 -1.17 6.39 86.38 0.55 -0.62 16 23 N -0.38 0.19 3.69 -352.06 -1.30 -1.11 16 24 C 0.26 -0.30 12.63 180.36 2.28 1.97 16 25 N -0.59 -3.70 11.19 -204.00 -2.28 -5.98 16 26 C 0.18 1.12 13.03 180.76 2.36 3.48 16 27 N -0.34 -2.26 12.57 -61.24 -0.77 -3.03 16 28 C -0.14 0.13 7.43 31.12 0.23 0.36 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.52 4.79 -2.39 -0.01 0.51 16 31 H 0.08 0.96 5.93 -2.39 -0.01 0.95 16 32 H 0.08 -0.14 7.13 -2.39 -0.02 -0.16 16 33 H 0.40 -4.00 8.74 -74.06 -0.65 -4.65 16 34 H -0.28 -0.07 7.04 99.48 0.70 0.64 16 35 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 36 H 0.20 -0.66 6.31 -2.91 -0.02 -0.68 16 37 H 0.44 -1.54 8.96 -92.70 -0.83 -2.37 16 38 H 0.20 -1.42 6.43 -2.92 -0.02 -1.44 16 39 H 0.41 -3.65 6.80 -92.71 -0.63 -4.28 16 40 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.12 -1.83 8.08 -2.39 -0.02 -1.85 16 42 H 0.15 -2.39 8.09 -2.39 -0.02 -2.41 16 43 H 0.10 -0.97 7.85 -2.39 -0.02 -0.99 16 44 H 0.26 -3.05 8.06 -2.91 -0.02 -3.07 16 45 H 0.23 0.21 8.06 -2.91 -0.02 0.18 16 46 H 0.09 -0.17 7.90 -2.39 -0.02 -0.19 16 47 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -35.52 388.18 -0.88 -36.40 By element: Atomic # 1 Polarization: -18.47 SS G_CDS: -1.00 Total: -19.47 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 9.65 Total: 13.07 kcal Atomic # 7 Polarization: -9.18 SS G_CDS: -9.85 Total: -19.03 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.79 Total: -9.55 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.11 Total: -1.42 kcal Total: -35.52 -0.88 -36.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.102 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds