Wall clock time and date at job start Sun Mar 7 2021 00:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46998 * 2 1 4 4 C 1.50699 * 109.47270 * 120.00013 * 2 1 3 5 5 C 1.38335 * 119.87428 * 65.00026 * 4 2 1 6 6 C 1.37994 * 120.13081 * 179.97438 * 5 4 2 7 7 C 1.39402 * 119.87057 * 0.02562 * 6 5 4 8 8 C 1.48272 * 120.12938 * 180.02562 * 7 6 5 9 9 C 1.39510 * 119.98048 * 179.97438 * 8 7 6 10 10 C 1.37663 * 120.02581 * 180.02562 * 9 8 7 11 11 C 1.39708 * 119.97598 * 359.97438 * 10 9 8 12 12 C 1.47722 * 120.02241 * 179.97438 * 11 10 9 13 13 O 1.21572 * 120.00008 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99838 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.85297 * 336.20137 * 15 14 12 17 17 C 1.53781 * 113.69050 * 107.46595 * 15 14 12 18 18 C 1.53778 * 87.08092 * 139.99343 * 17 15 14 19 19 H 1.09003 * 113.69428 * 89.13220 * 18 17 15 20 20 C 1.53004 * 113.61265 * 220.01963 * 18 17 15 21 21 N 1.46505 * 109.47120 * 272.49506 * 20 18 17 22 22 C 1.34428 * 126.82137 * 125.02328 * 21 20 18 23 23 N 1.30829 * 108.07758 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.82920 * 0.02562 * 23 22 21 25 25 N 1.30714 * 108.94945 * 359.97438 * 24 23 22 26 26 C 1.53775 * 87.08128 * 334.56558 * 18 17 15 27 27 C 1.39705 * 119.95055 * 0.25160 * 11 10 9 28 28 C 1.37667 * 119.97775 * 359.47196 * 27 11 10 29 29 C 1.39404 * 119.74789 * 0.27359 * 7 6 5 30 30 C 1.38008 * 119.86506 * 359.46918 * 29 7 6 31 31 H 0.96694 * 114.00173 * 60.00575 * 1 2 3 32 32 H 1.09000 * 109.47220 * 239.99611 * 2 1 3 33 33 H 1.48498 * 110.00108 * 60.00033 * 3 2 1 34 34 H 1.48498 * 110.00116 * 181.32070 * 3 2 1 35 35 H 1.08005 * 119.93464 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.06702 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.98190 * 359.97438 * 9 8 7 38 38 H 1.08002 * 120.01048 * 180.02562 * 10 9 8 39 39 H 0.96991 * 120.00322 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61340 * 25.44270 * 17 15 14 41 41 H 1.08996 * 113.61621 * 254.54201 * 17 15 14 42 42 H 1.09005 * 109.46732 * 152.49936 * 20 18 17 43 43 H 1.08994 * 109.47332 * 32.49889 * 20 18 17 44 44 H 1.08003 * 125.95916 * 0.03061 * 22 21 20 45 45 H 1.07995 * 125.52955 * 180.02562 * 24 23 22 46 46 H 1.09002 * 113.61258 * 139.97953 * 26 18 17 47 47 H 1.08999 * 113.62219 * 270.80144 * 26 18 17 48 48 H 1.08000 * 120.00927 * 179.72268 * 27 11 10 49 49 H 1.07998 * 119.99005 * 180.27167 * 28 27 11 50 50 H 1.07995 * 120.06615 * 179.72815 * 29 7 6 51 51 H 1.08005 * 119.93172 * 180.27425 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6832 -2.0612 1.3958 6 6 2.1412 -2.7171 2.5202 7 6 2.8548 -2.0157 3.4908 8 6 3.3501 -2.7148 4.7009 9 6 4.0644 -2.0099 5.6700 10 6 4.5251 -2.6582 6.7936 11 6 4.2767 -4.0225 6.9635 12 6 4.7711 -4.7193 8.1686 13 8 5.3940 -4.1055 9.0131 14 7 4.5307 -6.0353 8.3323 15 6 5.0205 -6.7263 9.5276 16 1 5.8748 -6.2271 9.9849 17 6 3.9115 -7.0904 10.5288 18 6 4.6469 -8.4247 10.7379 19 1 5.3993 -8.3913 11.5259 20 6 3.7101 -9.6280 10.8616 21 7 3.3082 -9.7922 12.2608 22 6 2.0524 -9.8474 12.7371 23 7 2.1168 -10.0006 14.0348 24 6 3.3909 -10.0467 14.4218 25 7 4.1584 -9.9236 13.3710 26 6 5.2253 -8.2369 9.3255 27 6 3.5653 -4.7284 5.9902 28 6 3.1006 -4.0770 4.8700 29 6 3.0966 -0.6532 3.3218 30 6 2.6382 -0.0090 2.1906 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5615 2.4679 1.2085 34 1 3.5346 1.7704 -0.0322 35 1 1.1298 -2.6036 0.6434 36 1 1.9464 -3.7717 2.6485 37 1 4.2567 -0.9554 5.5381 38 1 5.0778 -2.1122 7.5438 39 1 4.0334 -6.5250 7.6587 40 1 2.9287 -7.2007 10.0707 41 1 3.8977 -6.4559 11.4150 42 1 4.2266 -10.5267 10.5240 43 1 2.8255 -9.4645 10.2462 44 1 1.1480 -9.7783 12.1507 45 1 3.7339 -10.1673 15.4387 46 1 6.2723 -8.5280 9.2402 47 1 4.6024 -8.6619 8.5384 48 1 3.3766 -5.7841 6.1185 49 1 2.5468 -4.6216 4.1196 50 1 3.6451 -0.1038 4.0725 51 1 2.8288 1.0456 2.0565 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:05 Heat of formation + Delta-G solvation = 114.195959 kcal Electronic energy + Delta-G solvation = -33237.656794 eV Core-core repulsion = 28685.480317 eV Total energy + Delta-G solvation = -4552.176476 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.168 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.98942 -41.65188 -40.95240 -39.99327 -39.01298 -37.51557 -35.57898 -34.47037 -33.82295 -32.66657 -32.17006 -31.69057 -30.99056 -29.04506 -27.09564 -26.77710 -25.11155 -24.77004 -23.91413 -22.94642 -22.74834 -22.54471 -22.02442 -21.41917 -20.62440 -19.19894 -18.40570 -18.37832 -18.13565 -17.57585 -16.98079 -16.86607 -16.63348 -16.37585 -16.17206 -16.03694 -15.76754 -15.68377 -15.46948 -15.11147 -15.05705 -15.00901 -14.74525 -14.54395 -14.41654 -14.24063 -13.95194 -13.69991 -13.67727 -13.50679 -13.39249 -13.20445 -12.93212 -12.72416 -12.57925 -12.41760 -12.30005 -11.92900 -11.89861 -11.78318 -11.56387 -11.16182 -10.97552 -10.86118 -10.79957 -10.52842 -10.29729 -10.16075 -10.12917 -10.10074 -9.16952 -4.97719 -0.78244 0.22944 0.28745 0.39729 0.70003 1.27955 1.45234 1.60075 1.70972 1.94221 2.00382 2.02699 2.48653 2.90716 3.29631 3.34745 3.41221 3.44137 3.46082 3.53434 3.53776 3.65964 3.73693 3.75751 3.82207 3.87640 3.88515 3.97415 4.13181 4.15926 4.17971 4.19869 4.24032 4.37668 4.42037 4.50663 4.53432 4.59904 4.66280 4.70860 4.76108 4.77915 4.82237 4.90330 4.96579 4.99959 5.02564 5.10400 5.15447 5.19050 5.30610 5.30922 5.36704 5.45026 5.49308 5.54047 5.72085 5.80031 5.95632 6.42334 6.89179 7.09036 7.12977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.076 4.076 3 Si 0.767 3.233 4 C -0.088 4.088 5 C -0.096 4.096 6 C -0.101 4.101 7 C -0.059 4.059 8 C -0.024 4.024 9 C -0.127 4.127 10 C -0.073 4.073 11 C -0.150 4.150 12 C 0.556 3.444 13 O -0.586 6.586 14 N -0.696 5.696 15 C 0.114 3.886 16 H 0.085 0.915 17 C -0.142 4.142 18 C -0.116 4.116 19 H 0.079 0.921 20 C 0.136 3.864 21 N -0.377 5.377 22 C 0.257 3.743 23 N -0.586 5.586 24 C 0.186 3.814 25 N -0.351 5.351 26 C -0.114 4.114 27 C -0.068 4.068 28 C -0.115 4.115 29 C -0.111 4.111 30 C -0.143 4.143 31 H 0.404 0.596 32 H 0.099 0.901 33 H -0.300 1.300 34 H -0.291 1.291 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.145 0.855 44 H 0.259 0.741 45 H 0.230 0.770 46 H 0.082 0.918 47 H 0.128 0.872 48 H 0.168 0.832 49 H 0.163 0.837 50 H 0.138 0.862 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -3.860 -11.765 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.186 4.186 3 Si 0.674 3.326 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.059 4.059 8 C -0.025 4.025 9 C -0.145 4.145 10 C -0.092 4.092 11 C -0.153 4.153 12 C 0.344 3.656 13 O -0.467 6.467 14 N -0.348 5.348 15 C 0.009 3.991 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.136 4.136 19 H 0.098 0.902 20 C 0.016 3.984 21 N -0.168 5.168 22 C -0.039 4.039 23 N -0.315 5.315 24 C -0.117 4.117 25 N -0.180 5.180 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.133 4.133 29 C -0.129 4.129 30 C -0.161 4.161 31 H 0.255 0.745 32 H 0.116 0.884 33 H -0.228 1.228 34 H -0.219 1.219 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.258 0.742 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.162 0.838 44 H 0.275 0.725 45 H 0.246 0.754 46 H 0.100 0.900 47 H 0.146 0.854 48 H 0.185 0.815 49 H 0.180 0.820 50 H 0.156 0.844 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.168 -3.200 -10.072 11.033 hybrid contribution 0.284 0.098 0.523 0.603 sum -2.884 -3.103 -9.550 10.447 Atomic orbital electron populations 1.86438 1.16991 1.82353 1.51475 1.24751 0.86007 1.10455 0.97391 0.94484 0.77345 0.76079 0.84703 1.19840 0.98120 0.95179 0.95650 1.21227 0.98371 0.93402 0.98363 1.21646 0.96085 1.01434 0.92665 1.18942 0.99309 0.93218 0.94474 1.19119 0.96199 0.94316 0.92821 1.21327 0.98692 1.00955 0.93515 1.21227 0.97039 0.93792 0.97114 1.20010 1.04268 0.94931 0.96139 1.18611 0.78523 0.82776 0.85645 1.90783 1.42827 1.67318 1.45809 1.45714 1.56814 1.08265 1.23983 1.22457 0.97492 0.93119 0.86024 0.89702 1.23583 0.99604 0.96167 0.98694 1.22524 0.98410 0.93776 0.98865 0.90222 1.22234 1.01834 0.99383 0.74992 1.50748 1.04853 1.52767 1.08408 1.26888 0.91180 0.94798 0.91056 1.70538 1.22457 1.26121 1.12338 1.26426 0.86850 0.98089 1.00312 1.77956 1.19283 1.26411 0.94359 1.23319 1.03441 0.92262 0.96234 1.21525 0.94217 1.01112 0.91815 1.21511 1.00101 0.92994 0.98681 1.21379 0.99631 0.94441 0.97464 1.20972 1.00817 0.99053 0.95240 0.74467 0.88369 1.22813 1.21869 0.83484 0.82273 0.84404 0.85819 0.74154 0.86880 0.93854 0.87929 0.83770 0.72490 0.75367 0.89963 0.85381 0.81491 0.81954 0.84418 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.92 12.81 -148.98 -1.91 -0.99 16 2 C -0.08 0.13 2.79 71.24 0.20 0.33 16 3 Si 0.77 -1.51 29.84 68.60 2.05 0.54 16 4 C -0.09 -0.29 5.39 -19.82 -0.11 -0.40 16 5 C -0.10 -0.07 9.67 22.24 0.21 0.15 16 6 C -0.10 0.09 9.43 22.49 0.21 0.30 16 7 C -0.06 -0.12 5.88 -20.05 -0.12 -0.23 16 8 C -0.02 -0.02 5.88 -20.00 -0.12 -0.14 16 9 C -0.13 -0.32 9.41 22.44 0.21 -0.11 16 10 C -0.07 -0.36 9.58 22.49 0.22 -0.14 16 11 C -0.15 -0.33 5.88 -20.06 -0.12 -0.45 16 12 C 0.56 2.91 7.77 86.75 0.67 3.58 16 13 O -0.59 -9.00 15.93 -3.94 -0.06 -9.07 16 14 N -0.70 2.48 5.31 -443.02 -2.35 0.13 16 15 C 0.11 -0.28 4.24 45.52 0.19 -0.08 16 16 H 0.08 0.42 7.46 -2.39 -0.02 0.40 16 17 C -0.14 0.56 7.43 31.12 0.23 0.79 16 18 C -0.12 0.66 3.88 -10.27 -0.04 0.62 16 19 H 0.08 0.08 8.00 -2.39 -0.02 0.06 16 20 C 0.14 -1.23 6.39 86.38 0.55 -0.67 16 21 N -0.38 0.21 3.69 -352.05 -1.30 -1.09 16 22 C 0.26 -0.31 12.63 180.36 2.28 1.97 16 23 N -0.59 -3.72 11.19 -204.01 -2.28 -6.00 16 24 C 0.19 1.12 13.03 180.77 2.36 3.48 16 25 N -0.35 -2.33 12.45 -61.25 -0.76 -3.10 16 26 C -0.11 1.08 7.39 31.12 0.23 1.31 16 27 C -0.07 0.34 9.52 22.49 0.21 0.56 16 28 C -0.12 0.48 9.41 22.44 0.21 0.69 16 29 C -0.11 -0.42 9.43 22.50 0.21 -0.21 16 30 C -0.14 -0.75 8.65 22.24 0.19 -0.55 16 31 H 0.40 -4.87 8.74 -74.06 -0.65 -5.52 16 32 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 33 H -0.30 -1.82 7.04 99.48 0.70 -1.12 16 34 H -0.29 -1.13 7.11 99.48 0.71 -0.42 16 35 H 0.15 -0.44 8.06 -2.91 -0.02 -0.47 16 36 H 0.16 -1.18 6.19 -2.91 -0.02 -1.20 16 37 H 0.14 0.03 6.19 -2.91 -0.02 0.02 16 38 H 0.12 0.88 7.64 -2.91 -0.02 0.86 16 39 H 0.42 -4.92 6.75 -92.71 -0.63 -5.54 16 40 H 0.11 -1.02 7.90 -2.39 -0.02 -1.04 16 41 H 0.04 0.12 8.14 -2.39 -0.02 0.11 16 42 H 0.10 -1.05 8.14 -2.38 -0.02 -1.07 16 43 H 0.14 -2.48 7.79 -2.39 -0.02 -2.50 16 44 H 0.26 -3.06 8.06 -2.91 -0.02 -3.08 16 45 H 0.23 0.12 8.06 -2.91 -0.02 0.10 16 46 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.13 -2.09 8.08 -2.39 -0.02 -2.11 16 48 H 0.17 -2.28 6.39 -2.91 -0.02 -2.30 16 49 H 0.16 -1.66 6.19 -2.91 -0.02 -1.68 16 50 H 0.14 0.13 6.19 -2.91 -0.02 0.11 16 51 H 0.11 0.60 4.85 -2.91 -0.01 0.58 16 Total: 0.00 -36.94 423.93 1.04 -35.90 By element: Atomic # 1 Polarization: -26.90 SS G_CDS: -0.23 Total: -27.13 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 7.89 Total: 10.79 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -6.70 Total: -10.05 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.97 Total: -10.05 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.05 Total: 0.54 kcal Total: -36.94 1.04 -35.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.098 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds