Wall clock time and date at job start Sun Mar 7 2021 00:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.46786 * 2 1 4 4 C 1.50696 * 109.47285 * 239.99986 * 2 1 3 5 5 C 1.38896 * 119.67782 * 119.72698 * 4 2 1 6 6 C 1.36471 * 120.62025 * 180.30312 * 5 4 2 7 7 C 1.40067 * 119.82587 * 359.95011 * 6 5 4 8 8 C 1.41592 * 133.38300 * 180.02562 * 7 6 5 9 9 C 1.35867 * 107.72983 * 180.02562 * 8 7 6 10 10 C 1.47056 * 125.42396 * 180.02562 * 9 8 7 11 11 O 1.21647 * 120.00411 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00038 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84589 * 23.80947 * 13 12 10 15 15 C 1.53785 * 113.61082 * 155.00154 * 13 12 10 16 16 C 1.53785 * 87.07871 * 139.98421 * 15 13 12 17 17 H 1.08999 * 113.61114 * 89.11776 * 16 15 13 18 18 C 1.52995 * 113.61304 * 219.93345 * 16 15 13 19 19 N 1.46496 * 109.47045 * 185.00103 * 18 16 15 20 20 C 1.34434 * 126.82321 * 124.71045 * 19 18 16 21 21 N 1.30841 * 108.07671 * 179.89539 * 20 19 18 22 22 C 1.33248 * 109.82708 * 0.37797 * 21 20 19 23 23 N 1.30712 * 108.94313 * 359.76640 * 22 21 20 24 24 C 1.53775 * 87.08043 * 334.56920 * 16 15 13 25 25 N 1.38148 * 109.14700 * 0.02562 * 9 8 7 26 26 C 1.37485 * 108.78707 * 359.97438 * 25 9 8 27 27 C 1.37715 * 119.67617 * 300.00026 * 4 2 1 28 28 H 0.96703 * 113.99947 * 60.00295 * 1 2 3 29 29 H 1.08997 * 109.46950 * 119.99778 * 2 1 3 30 30 H 1.48494 * 110.00428 * 60.00011 * 3 2 1 31 31 H 1.48504 * 109.99908 * 181.31806 * 3 2 1 32 32 H 1.08001 * 119.68841 * 0.27415 * 5 4 2 33 33 H 1.07998 * 120.09039 * 179.97438 * 6 5 4 34 34 H 1.08005 * 126.13417 * 0.02562 * 8 7 6 35 35 H 0.97003 * 119.99902 * 0.02562 * 12 10 9 36 36 H 1.09004 * 113.61613 * 254.53390 * 15 13 12 37 37 H 1.09003 * 113.61587 * 25.35371 * 15 13 12 38 38 H 1.09001 * 109.47170 * 304.99910 * 18 16 15 39 39 H 1.08996 * 109.47383 * 65.00029 * 18 16 15 40 40 H 1.07995 * 125.96207 * 0.03453 * 20 19 18 41 41 H 1.07995 * 125.52114 * 179.79768 * 22 21 20 42 42 H 1.09003 * 113.61412 * 270.88319 * 24 16 15 43 43 H 1.08996 * 113.62010 * 139.98283 * 24 16 15 44 44 H 0.96996 * 125.60686 * 179.97438 * 25 9 8 45 45 H 1.08005 * 120.09153 * 359.69666 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7248 -0.0273 -2.1431 6 6 3.1851 -0.6500 -3.2669 7 6 2.8569 -1.9908 -3.5043 8 6 3.1677 -2.8984 -4.5457 9 6 2.5723 -4.0840 -4.2526 10 6 2.6433 -5.3001 -5.0764 11 8 3.2749 -5.2946 -6.1160 12 7 2.0085 -6.4209 -4.6795 13 6 2.0787 -7.6323 -5.5005 14 1 2.9564 -7.6555 -6.1464 15 6 1.8662 -8.9299 -4.7030 16 6 1.0379 -9.4347 -5.8964 17 1 1.6302 -9.9513 -6.6516 18 6 -0.2138 -10.2138 -5.4877 19 7 -0.8666 -10.7514 -6.6840 20 6 -1.1787 -12.0370 -6.9226 21 7 -1.7511 -12.1046 -8.0972 22 6 -1.8143 -10.8892 -8.6397 23 7 -1.2852 -10.0270 -7.8120 24 6 0.7654 -7.9587 -6.2307 25 7 1.8897 -3.9651 -3.0575 26 6 2.0519 -2.6859 -2.5804 27 6 1.5946 -2.0289 -1.4417 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5345 1.7704 -0.0321 32 1 2.9795 1.0065 -1.9620 33 1 3.8011 -0.1106 -3.9711 34 1 3.7700 -2.6863 -5.4168 35 1 1.5046 -6.4252 -3.8507 36 1 2.7830 -9.4957 -4.5373 37 1 1.2833 -8.7922 -3.7923 38 1 0.0681 -11.0343 -4.8279 39 1 -0.9019 -9.5484 -4.9664 40 1 -0.9918 -12.8686 -6.2594 41 1 -2.2351 -10.6546 -9.6063 42 1 -0.1197 -7.5557 -5.7383 43 1 0.7934 -7.7403 -7.2981 44 1 1.3799 -4.6684 -2.6259 45 1 0.9775 -2.5516 -0.7259 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:11 Heat of formation + Delta-G solvation = 119.637878 kcal Electronic energy + Delta-G solvation = -29293.487040 eV Core-core repulsion = 25088.110532 eV Total energy + Delta-G solvation = -4205.376508 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.01714 -42.73343 -41.20734 -39.70990 -38.88537 -36.93280 -35.63751 -34.17899 -33.28745 -32.14867 -31.19756 -30.43948 -29.27525 -27.07475 -26.98792 -25.14657 -23.95488 -23.14159 -22.91838 -22.32507 -21.95929 -21.50330 -20.85874 -19.51029 -18.48861 -18.46348 -17.89704 -17.36496 -16.99432 -16.79211 -16.49406 -16.20894 -16.17894 -15.85887 -15.64453 -15.52690 -15.32641 -15.02956 -14.88166 -14.71671 -14.62835 -14.49665 -14.12098 -13.92228 -13.72643 -13.32115 -13.18264 -13.01043 -12.63254 -12.56392 -12.45143 -12.14375 -11.99475 -11.67994 -11.63330 -11.26631 -10.97057 -10.94858 -10.75540 -10.66014 -10.49023 -10.29257 -9.35743 -8.86169 -5.03262 -0.37781 0.48592 0.65574 0.96283 1.26819 1.27040 1.63206 1.71514 1.87265 1.97601 2.04048 2.20598 2.74532 3.02163 3.16186 3.34114 3.37497 3.39169 3.49940 3.55320 3.60140 3.67162 3.75994 3.88850 3.94999 3.97318 4.01732 4.20800 4.25563 4.34464 4.36330 4.40077 4.43944 4.46558 4.50792 4.58445 4.70092 4.86074 4.92070 4.92786 4.95685 5.21684 5.27393 5.34169 5.37081 5.47070 5.49299 5.57572 5.78709 5.92799 6.13811 6.29135 6.52668 6.93746 7.12697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.068 4.068 3 Si 0.693 3.307 4 C -0.088 4.088 5 C -0.146 4.146 6 C -0.050 4.050 7 C -0.117 4.117 8 C -0.098 4.098 9 C 0.012 3.988 10 C 0.586 3.414 11 O -0.515 6.515 12 N -0.719 5.719 13 C 0.123 3.877 14 H 0.121 0.879 15 C -0.137 4.137 16 C -0.119 4.119 17 H 0.102 0.898 18 C 0.141 3.859 19 N -0.380 5.380 20 C 0.252 3.748 21 N -0.546 5.546 22 C 0.197 3.803 23 N -0.312 5.312 24 C -0.135 4.135 25 N -0.579 5.579 26 C 0.116 3.884 27 C -0.104 4.104 28 H 0.380 0.620 29 H 0.114 0.886 30 H -0.256 1.256 31 H -0.257 1.257 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.396 0.604 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.218 0.782 41 H 0.217 0.783 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.417 0.583 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -0.700 3.690 3.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.595 3.405 4 C -0.090 4.090 5 C -0.165 4.165 6 C -0.068 4.068 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.097 4.097 10 C 0.373 3.627 11 O -0.390 6.390 12 N -0.369 5.369 13 C 0.018 3.982 14 H 0.139 0.861 15 C -0.176 4.176 16 C -0.138 4.138 17 H 0.120 0.880 18 C 0.019 3.981 19 N -0.171 5.171 20 C -0.045 4.045 21 N -0.273 5.273 22 C -0.105 4.105 23 N -0.140 5.140 24 C -0.173 4.173 25 N -0.184 5.184 26 C 0.006 3.994 27 C -0.125 4.125 28 H 0.227 0.773 29 H 0.131 0.869 30 H -0.181 1.181 31 H -0.182 1.182 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.230 0.770 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.234 0.766 41 H 0.233 0.767 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.254 0.746 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.131 -0.075 3.684 3.687 hybrid contribution -0.394 -1.253 1.022 1.664 sum -0.264 -1.327 4.706 4.897 Atomic orbital electron populations 1.86499 1.17069 1.81721 1.49347 1.25075 0.85241 1.10303 0.97291 0.94537 0.81089 0.77883 0.87024 1.20040 0.98309 0.93814 0.96790 1.20490 1.00968 0.99733 0.95288 1.20389 0.97681 0.92084 0.96695 1.18229 1.02764 0.94928 0.96242 1.20993 1.01511 0.90374 0.99656 1.20090 1.03609 0.96596 0.89425 1.17229 0.79050 0.81712 0.84709 1.90887 1.41553 1.83418 1.23139 1.45855 1.53487 1.11441 1.26163 1.22586 0.99985 0.82102 0.93493 0.86099 1.23392 1.00853 0.96056 0.97313 1.22624 0.95737 0.96323 0.99163 0.87981 1.21849 0.93601 0.99741 0.82949 1.50578 1.44908 1.06281 1.15340 1.26140 0.95002 0.88244 0.95092 1.70576 1.23018 1.25463 1.08263 1.26087 0.97922 0.86076 1.00460 1.78090 1.20189 1.20279 0.95437 1.23461 0.97532 0.93942 1.02407 1.41875 1.45685 1.11113 1.19682 1.18307 1.00046 0.84620 0.96454 1.19852 1.02635 0.94184 0.95826 0.77257 0.86878 1.18110 1.18199 0.85324 0.84970 0.82365 0.76983 0.89744 0.89062 0.87661 0.89131 0.76554 0.76684 0.89501 0.90137 0.74560 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.23 12.76 -35.23 -0.45 -0.22 16 2 C -0.07 0.06 2.81 36.00 0.10 0.16 16 3 Si 0.69 -1.01 29.75 -169.99 -5.06 -6.07 16 4 C -0.09 0.03 5.40 -104.57 -0.56 -0.54 16 5 C -0.15 0.09 8.59 -39.98 -0.34 -0.25 16 6 C -0.05 0.00 10.06 -39.53 -0.40 -0.40 16 7 C -0.12 -0.16 6.16 -106.93 -0.66 -0.82 16 8 C -0.10 -0.17 10.53 -39.15 -0.41 -0.58 16 9 C 0.01 0.01 6.97 -82.29 -0.57 -0.56 16 10 C 0.59 0.89 7.80 -12.68 -0.10 0.79 16 11 O -0.52 -2.76 16.44 5.24 0.09 -2.67 16 12 N -0.72 1.41 5.35 -54.21 -0.29 1.12 16 13 C 0.12 -0.24 4.24 -67.12 -0.28 -0.53 16 14 H 0.12 0.00 7.46 -51.93 -0.39 -0.38 16 15 C -0.14 0.65 7.39 -25.91 -0.19 0.46 16 16 C -0.12 0.40 3.85 -89.81 -0.35 0.06 16 17 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 18 C 0.14 -0.56 6.39 -4.05 -0.03 -0.58 16 19 N -0.38 0.17 3.69 -62.63 -0.23 -0.06 16 20 C 0.25 -0.13 12.63 -90.64 -1.14 -1.27 16 21 N -0.55 -1.41 11.19 -15.83 -0.18 -1.59 16 22 C 0.20 0.39 13.03 -91.81 -1.20 -0.80 16 23 N -0.31 -0.71 12.57 29.29 0.37 -0.34 16 24 C -0.13 0.23 7.43 -25.93 -0.19 0.04 16 25 N -0.58 0.66 6.07 -7.36 -0.04 0.62 16 26 C 0.12 0.07 7.25 -83.98 -0.61 -0.54 16 27 C -0.10 -0.01 9.61 -39.42 -0.38 -0.38 16 28 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 29 H 0.11 -0.05 7.96 -51.93 -0.41 -0.47 16 30 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 31 H -0.26 -0.23 7.11 56.52 0.40 0.18 16 32 H 0.13 -0.32 4.82 -52.49 -0.25 -0.57 16 33 H 0.13 -0.25 8.06 -52.49 -0.42 -0.68 16 34 H 0.16 0.18 8.06 -52.48 -0.42 -0.25 16 35 H 0.40 -1.92 7.78 -40.82 -0.32 -2.24 16 36 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 37 H 0.09 -0.58 8.08 -51.93 -0.42 -1.00 16 38 H 0.11 -0.71 8.09 -51.93 -0.42 -1.13 16 39 H 0.09 -0.39 7.85 -51.93 -0.41 -0.80 16 40 H 0.22 -1.07 8.06 -52.49 -0.42 -1.49 16 41 H 0.22 -0.20 8.06 -52.49 -0.42 -0.62 16 42 H 0.09 -0.16 7.90 -51.93 -0.41 -0.57 16 43 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.42 -1.80 8.12 -40.82 -0.33 -2.14 16 45 H 0.13 -0.11 8.06 -52.48 -0.42 -0.53 16 LS Contribution 383.64 15.07 5.78 5.78 Total: 0.00 -12.07 383.64 -12.87 -24.94 By element: Atomic # 1 Polarization: -10.22 SS G_CDS: -5.54 Total: -15.76 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -7.32 Total: -5.76 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.38 Total: -0.24 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: -0.36 Total: -2.89 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -5.06 Total: -6.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -12.07 -12.87 -24.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.581 kcal (2) G-P(sol) polarization free energy of solvation -12.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds