Wall clock time and date at job start Sun Mar 7 2021 00:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.46786 * 2 1 4 4 C 1.50696 * 109.47285 * 239.99986 * 2 1 3 5 5 C 1.38896 * 119.67782 * 119.72698 * 4 2 1 6 6 C 1.36471 * 120.62025 * 180.30312 * 5 4 2 7 7 C 1.40067 * 119.82587 * 359.95011 * 6 5 4 8 8 C 1.41592 * 133.38300 * 180.02562 * 7 6 5 9 9 C 1.35867 * 107.72983 * 180.02562 * 8 7 6 10 10 C 1.47056 * 125.42396 * 180.02562 * 9 8 7 11 11 O 1.21647 * 120.00411 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00038 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84589 * 23.80947 * 13 12 10 15 15 C 1.53785 * 113.61082 * 155.00154 * 13 12 10 16 16 C 1.53785 * 87.07871 * 139.98421 * 15 13 12 17 17 H 1.08999 * 113.61114 * 89.11776 * 16 15 13 18 18 C 1.52995 * 113.61304 * 219.93345 * 16 15 13 19 19 N 1.46496 * 109.47045 * 185.00103 * 18 16 15 20 20 C 1.34434 * 126.82321 * 124.71045 * 19 18 16 21 21 N 1.30841 * 108.07671 * 179.89539 * 20 19 18 22 22 C 1.33248 * 109.82708 * 0.37797 * 21 20 19 23 23 N 1.30712 * 108.94313 * 359.76640 * 22 21 20 24 24 C 1.53775 * 87.08043 * 334.56920 * 16 15 13 25 25 N 1.38148 * 109.14700 * 0.02562 * 9 8 7 26 26 C 1.37485 * 108.78707 * 359.97438 * 25 9 8 27 27 C 1.37715 * 119.67617 * 300.00026 * 4 2 1 28 28 H 0.96703 * 113.99947 * 60.00295 * 1 2 3 29 29 H 1.08997 * 109.46950 * 119.99778 * 2 1 3 30 30 H 1.48494 * 110.00428 * 60.00011 * 3 2 1 31 31 H 1.48504 * 109.99908 * 181.31806 * 3 2 1 32 32 H 1.08001 * 119.68841 * 0.27415 * 5 4 2 33 33 H 1.07998 * 120.09039 * 179.97438 * 6 5 4 34 34 H 1.08005 * 126.13417 * 0.02562 * 8 7 6 35 35 H 0.97003 * 119.99902 * 0.02562 * 12 10 9 36 36 H 1.09004 * 113.61613 * 254.53390 * 15 13 12 37 37 H 1.09003 * 113.61587 * 25.35371 * 15 13 12 38 38 H 1.09001 * 109.47170 * 304.99910 * 18 16 15 39 39 H 1.08996 * 109.47383 * 65.00029 * 18 16 15 40 40 H 1.07995 * 125.96207 * 0.03453 * 20 19 18 41 41 H 1.07995 * 125.52114 * 179.79768 * 22 21 20 42 42 H 1.09003 * 113.61412 * 270.88319 * 24 16 15 43 43 H 1.08996 * 113.62010 * 139.98283 * 24 16 15 44 44 H 0.96996 * 125.60686 * 179.97438 * 25 9 8 45 45 H 1.08005 * 120.09153 * 359.69666 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7248 -0.0273 -2.1431 6 6 3.1851 -0.6500 -3.2669 7 6 2.8569 -1.9908 -3.5043 8 6 3.1677 -2.8984 -4.5457 9 6 2.5723 -4.0840 -4.2526 10 6 2.6433 -5.3001 -5.0764 11 8 3.2749 -5.2946 -6.1160 12 7 2.0085 -6.4209 -4.6795 13 6 2.0787 -7.6323 -5.5005 14 1 2.9564 -7.6555 -6.1464 15 6 1.8662 -8.9299 -4.7030 16 6 1.0379 -9.4347 -5.8964 17 1 1.6302 -9.9513 -6.6516 18 6 -0.2138 -10.2138 -5.4877 19 7 -0.8666 -10.7514 -6.6840 20 6 -1.1787 -12.0370 -6.9226 21 7 -1.7511 -12.1046 -8.0972 22 6 -1.8143 -10.8892 -8.6397 23 7 -1.2852 -10.0270 -7.8120 24 6 0.7654 -7.9587 -6.2307 25 7 1.8897 -3.9651 -3.0575 26 6 2.0519 -2.6859 -2.5804 27 6 1.5946 -2.0289 -1.4417 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5345 1.7704 -0.0321 32 1 2.9795 1.0065 -1.9620 33 1 3.8011 -0.1106 -3.9711 34 1 3.7700 -2.6863 -5.4168 35 1 1.5046 -6.4252 -3.8507 36 1 2.7830 -9.4957 -4.5373 37 1 1.2833 -8.7922 -3.7923 38 1 0.0681 -11.0343 -4.8279 39 1 -0.9019 -9.5484 -4.9664 40 1 -0.9918 -12.8686 -6.2594 41 1 -2.2351 -10.6546 -9.6063 42 1 -0.1197 -7.5557 -5.7383 43 1 0.7934 -7.7403 -7.2981 44 1 1.3799 -4.6684 -2.6259 45 1 0.9775 -2.5516 -0.7259 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:10 Heat of formation + Delta-G solvation = 118.568011 kcal Electronic energy + Delta-G solvation = -29293.533433 eV Core-core repulsion = 25088.110532 eV Total energy + Delta-G solvation = -4205.422901 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.98113 -42.73703 -41.15840 -39.67697 -38.87707 -36.88554 -35.58871 -34.14339 -33.27887 -32.15812 -31.18604 -30.42008 -29.13692 -27.04836 -26.77066 -25.08399 -23.90331 -23.14670 -22.86272 -22.26595 -21.93833 -21.48201 -20.74229 -19.46953 -18.42527 -18.36793 -17.86491 -17.27382 -16.91309 -16.71881 -16.54848 -16.18576 -16.12333 -15.80442 -15.60654 -15.48721 -15.25958 -14.98900 -14.86308 -14.70466 -14.52816 -14.49144 -14.12918 -13.74166 -13.50416 -13.22870 -13.15776 -12.91193 -12.59467 -12.52586 -12.31679 -12.03647 -11.97191 -11.64961 -11.51170 -11.34370 -10.98633 -10.97983 -10.79313 -10.57906 -10.43603 -10.26875 -9.34738 -8.85293 -4.94265 -0.40268 0.51006 0.70591 0.91008 1.34613 1.45605 1.67866 1.72332 1.94302 2.01432 2.02195 2.12576 2.75750 3.27373 3.38075 3.46897 3.54011 3.55714 3.64816 3.69108 3.70311 3.72352 3.91350 4.02291 4.11697 4.15930 4.23911 4.27607 4.30748 4.43744 4.49161 4.55307 4.59911 4.65815 4.69200 4.75796 4.86064 4.91773 4.97057 5.01019 5.05982 5.28087 5.32936 5.38798 5.45072 5.45859 5.52246 5.55557 5.95410 5.96208 6.22504 6.40858 6.79066 6.91314 7.13977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.070 4.070 3 Si 0.775 3.225 4 C -0.089 4.089 5 C -0.147 4.147 6 C -0.059 4.059 7 C -0.136 4.136 8 C -0.119 4.119 9 C 0.010 3.990 10 C 0.585 3.415 11 O -0.563 6.563 12 N -0.699 5.699 13 C 0.113 3.887 14 H 0.095 0.905 15 C -0.113 4.113 16 C -0.111 4.111 17 H 0.085 0.915 18 C 0.135 3.865 19 N -0.379 5.379 20 C 0.256 3.744 21 N -0.586 5.586 22 C 0.183 3.817 23 N -0.344 5.344 24 C -0.136 4.136 25 N -0.563 5.563 26 C 0.108 3.892 27 C -0.109 4.109 28 H 0.396 0.604 29 H 0.110 0.890 30 H -0.302 1.302 31 H -0.286 1.286 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.413 0.587 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.260 0.740 41 H 0.229 0.771 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.432 0.568 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -1.557 5.858 6.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.180 4.180 3 Si 0.682 3.318 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.147 4.147 9 C -0.100 4.100 10 C 0.372 3.628 11 O -0.442 6.442 12 N -0.350 5.350 13 C 0.009 3.991 14 H 0.113 0.887 15 C -0.151 4.151 16 C -0.131 4.131 17 H 0.104 0.896 18 C 0.014 3.986 19 N -0.170 5.170 20 C -0.040 4.040 21 N -0.314 5.314 22 C -0.119 4.119 23 N -0.173 5.173 24 C -0.175 4.175 25 N -0.169 5.169 26 C -0.003 4.003 27 C -0.129 4.129 28 H 0.246 0.754 29 H 0.128 0.872 30 H -0.230 1.230 31 H -0.213 1.213 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.251 0.749 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.275 0.725 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.273 0.727 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.527 -0.968 5.884 5.986 hybrid contribution -0.204 -0.956 0.401 1.056 sum -0.731 -1.923 6.285 6.613 Atomic orbital electron populations 1.86464 1.17098 1.82142 1.50565 1.25135 0.85311 1.10607 0.96926 0.93571 0.77973 0.75609 0.84696 1.20163 0.98155 0.93857 0.96907 1.20693 1.00502 1.00516 0.94867 1.20633 0.97923 0.91841 0.97315 1.18439 1.03462 0.95673 0.96431 1.21108 1.02278 0.91214 1.00067 1.19963 1.03865 0.96131 0.89998 1.17365 0.78770 0.82526 0.84133 1.90861 1.43881 1.84225 1.25199 1.45729 1.52329 1.10478 1.26470 1.22617 0.98866 0.83379 0.94262 0.88688 1.23316 1.01231 0.93240 0.97336 1.22491 0.96252 0.94897 0.99440 0.89627 1.22215 0.92917 1.01326 0.82116 1.50774 1.44538 1.06309 1.15366 1.26921 0.93337 0.89085 0.94641 1.70549 1.24817 1.26017 1.10013 1.26433 0.98128 0.86199 1.01186 1.78009 1.21037 1.21518 0.96696 1.23439 0.97807 0.95833 1.00393 1.41748 1.45134 1.11165 1.18825 1.18439 1.00128 0.85091 0.96595 1.19986 1.02767 0.94404 0.95759 0.75426 0.87231 1.23002 1.21298 0.83644 0.83562 0.82908 0.74947 0.88907 0.86110 0.83740 0.88188 0.72473 0.75519 0.88881 0.93491 0.72724 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.01 12.76 -148.98 -1.90 -0.89 16 2 C -0.07 0.16 2.81 71.23 0.20 0.36 16 3 Si 0.77 -2.52 29.75 68.60 2.04 -0.48 16 4 C -0.09 0.11 5.40 -19.83 -0.11 0.01 16 5 C -0.15 0.27 8.59 22.01 0.19 0.46 16 6 C -0.06 -0.01 10.06 22.30 0.22 0.22 16 7 C -0.14 -0.44 6.16 -21.36 -0.13 -0.58 16 8 C -0.12 -0.59 10.53 22.55 0.24 -0.35 16 9 C 0.01 0.03 6.97 39.91 0.28 0.31 16 10 C 0.58 2.55 7.80 86.56 0.68 3.22 16 11 O -0.56 -7.55 16.44 -4.18 -0.07 -7.61 16 12 N -0.70 2.71 5.35 -443.64 -2.37 0.34 16 13 C 0.11 -0.39 4.24 45.52 0.19 -0.19 16 14 H 0.10 0.22 7.46 -2.39 -0.02 0.21 16 15 C -0.11 1.27 7.39 31.12 0.23 1.50 16 16 C -0.11 0.82 3.85 -10.27 -0.04 0.78 16 17 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 18 C 0.13 -1.34 6.39 86.38 0.55 -0.79 16 19 N -0.38 0.59 3.69 -352.08 -1.30 -0.71 16 20 C 0.26 -0.52 12.63 180.36 2.28 1.76 16 21 N -0.59 -3.25 11.19 -204.00 -2.28 -5.53 16 22 C 0.18 0.97 13.03 180.76 2.36 3.32 16 23 N -0.34 -1.90 12.57 -61.24 -0.77 -2.67 16 24 C -0.14 0.34 7.43 31.12 0.23 0.57 16 25 N -0.56 1.47 6.07 -177.19 -1.08 0.39 16 26 C 0.11 0.11 7.25 39.13 0.28 0.39 16 27 C -0.11 0.07 9.61 22.37 0.22 0.28 16 28 H 0.40 -3.72 8.70 -74.06 -0.64 -4.37 16 29 H 0.11 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H -0.30 -1.35 7.11 99.48 0.71 -0.65 16 31 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 32 H 0.15 -0.86 4.82 -2.91 -0.01 -0.88 16 33 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 34 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 35 H 0.41 -4.59 7.78 -92.71 -0.72 -5.31 16 36 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 37 H 0.12 -2.01 8.08 -2.39 -0.02 -2.03 16 38 H 0.14 -2.54 8.09 -2.39 -0.02 -2.56 16 39 H 0.10 -1.12 7.85 -2.39 -0.02 -1.14 16 40 H 0.26 -3.25 8.06 -2.91 -0.02 -3.27 16 41 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.09 -0.36 7.90 -2.39 -0.02 -0.38 16 43 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.43 -4.26 8.12 -92.71 -0.75 -5.02 16 45 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -31.84 383.64 -0.87 -32.72 By element: Atomic # 1 Polarization: -25.83 SS G_CDS: -1.01 Total: -26.83 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 7.86 Total: 11.26 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -7.80 Total: -8.17 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.97 Total: -8.50 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.04 Total: -0.48 kcal Total: -31.84 -0.87 -32.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.284 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds