Wall clock time and date at job start Sun Mar 7 2021 00:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46962 * 2 1 4 4 C 1.50698 * 109.47477 * 119.99701 * 2 1 3 5 5 C 1.38322 * 119.87467 * 64.99917 * 4 2 1 6 6 C 1.38021 * 120.11856 * 180.02562 * 5 4 2 7 7 C 1.39338 * 119.87858 * 0.02562 * 6 5 4 8 8 C 1.48390 * 120.11953 * 180.02562 * 7 6 5 9 9 C 1.39316 * 120.12280 * 56.37684 * 8 7 6 10 10 C 1.50704 * 120.06181 * 359.95451 * 9 8 7 11 11 C 1.50696 * 109.47224 * 83.95417 * 10 9 8 12 12 O 1.21281 * 120.00019 * 5.65009 * 11 10 9 13 13 N 1.34778 * 120.00078 * 185.65517 * 11 10 9 14 14 C 1.46496 * 119.99888 * 179.97438 * 13 11 10 15 15 H 1.09010 * 112.85218 * 25.33698 * 14 13 11 16 16 C 1.53778 * 113.61547 * 156.52972 * 14 13 11 17 17 C 1.53773 * 87.08505 * 139.98245 * 16 14 13 18 18 H 1.09000 * 113.61661 * 89.11745 * 17 16 14 19 19 C 1.53001 * 113.62012 * 219.93678 * 17 16 14 20 20 N 1.46491 * 109.47576 * 184.99867 * 19 17 16 21 21 C 1.34431 * 126.82663 * 124.99830 * 20 19 17 22 22 N 1.30830 * 108.08030 * 179.97438 * 21 20 19 23 23 C 1.33233 * 109.82785 * 0.02562 * 22 21 20 24 24 N 1.30713 * 108.95057 * 359.74867 * 23 22 21 25 25 C 1.53784 * 113.61833 * 254.13864 * 14 13 11 26 26 C 1.38047 * 119.87865 * 179.97438 * 9 8 7 27 27 C 1.38292 * 120.11813 * 0.02562 * 26 9 8 28 28 C 1.38342 * 120.24754 * 359.95393 * 27 26 9 29 29 C 1.37997 * 120.11834 * 0.04637 * 28 27 26 30 30 C 1.39331 * 119.75820 * 0.27071 * 7 6 5 31 31 C 1.38018 * 119.87480 * 359.43125 * 30 7 6 32 32 H 0.96701 * 113.99597 * 299.99655 * 1 2 3 33 33 H 1.08998 * 109.46929 * 240.00174 * 2 1 3 34 34 H 1.48496 * 109.99856 * 178.68386 * 3 2 1 35 35 H 1.48504 * 109.99819 * 299.99917 * 3 2 1 36 36 H 1.08000 * 119.94592 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.05996 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.46950 * 203.95819 * 10 9 8 39 39 H 1.09000 * 109.46877 * 323.95245 * 10 9 8 40 40 H 0.96999 * 119.99797 * 359.97438 * 13 11 10 41 41 H 1.09000 * 113.61458 * 254.53193 * 16 14 13 42 42 H 1.09000 * 113.61469 * 25.34630 * 16 14 13 43 43 H 1.09000 * 109.46962 * 305.00213 * 19 17 16 44 44 H 1.08997 * 109.46840 * 64.99412 * 19 17 16 45 45 H 1.08004 * 125.95832 * 359.93001 * 21 20 19 46 46 H 1.08009 * 125.52853 * 179.97438 * 23 22 21 47 47 H 1.08995 * 113.60936 * 334.56751 * 25 14 13 48 48 H 1.08999 * 113.61170 * 105.47034 * 25 14 13 49 49 H 1.07998 * 119.93942 * 179.97438 * 26 9 8 50 50 H 1.08002 * 119.87978 * 179.97438 * 27 26 9 51 51 H 1.07999 * 119.94103 * 180.02562 * 28 27 26 52 52 H 1.08006 * 120.05739 * 180.25652 * 29 28 27 53 53 H 1.08000 * 120.06076 * 179.72257 * 30 7 6 54 54 H 1.08004 * 119.93662 * 180.27156 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6832 -2.0610 1.3959 6 6 2.1406 -2.7165 2.5212 7 6 2.8530 -2.0150 3.4916 8 6 3.3477 -2.7145 4.7032 9 6 4.1731 -3.8298 4.5786 10 6 4.5653 -4.3298 3.2121 11 6 5.7527 -3.5478 2.7126 12 8 6.2969 -2.7424 3.4379 13 7 6.2098 -3.7433 1.4599 14 6 7.3638 -2.9827 0.9743 15 1 8.0180 -2.6462 1.7787 16 6 8.1113 -3.6683 -0.1815 17 6 8.2546 -2.2732 -0.8124 18 1 9.1524 -1.7415 -0.4971 19 6 8.0608 -2.2639 -2.3300 20 7 8.3329 -0.9213 -2.8489 21 6 9.2071 -0.5930 -3.8159 22 7 9.1537 0.7027 -3.9888 23 6 8.2615 1.2337 -3.1537 24 7 7.7286 0.2783 -2.4384 25 6 6.9942 -1.8728 -0.0241 26 6 4.6309 -4.4764 5.7091 27 6 4.2710 -4.0192 6.9637 28 6 3.4519 -2.9118 7.0933 29 6 2.9886 -2.2579 5.9699 30 6 3.0948 -0.6532 3.3228 31 6 2.6381 -0.0091 2.1907 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 3.5345 1.7703 0.0321 35 1 1.5614 2.4679 -1.2085 36 1 1.1299 -2.6036 0.6437 37 1 1.9466 -3.7712 2.6492 38 1 4.8255 -5.3866 3.2728 39 1 3.7296 -4.2005 2.5243 40 1 5.7747 -4.3877 0.8800 41 1 9.0612 -4.1127 0.1156 42 1 7.4884 -4.3493 -0.7614 43 1 8.7467 -2.9764 -2.7882 44 1 7.0344 -2.5439 -2.5669 45 1 9.8431 -1.2791 -4.3555 46 1 8.0156 2.2830 -3.0822 47 1 6.0649 -2.0610 -0.5617 48 1 7.0436 -0.8700 0.4000 49 1 5.2705 -5.3414 5.6136 50 1 4.6310 -4.5282 7.8455 51 1 3.1743 -2.5587 8.0755 52 1 2.3526 -1.3910 6.0724 53 1 3.6426 -0.1038 4.0740 54 1 2.8288 1.0455 2.0567 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:14 Heat of formation + Delta-G solvation = 110.453418 kcal Electronic energy + Delta-G solvation = -38278.018496 eV Core-core repulsion = 33570.142112 eV Total energy + Delta-G solvation = -4707.876384 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.184 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.03226 -41.60808 -40.85964 -39.89811 -39.19064 -37.57239 -35.46632 -34.41310 -33.94778 -33.34589 -32.21516 -32.00934 -30.74659 -29.49997 -28.39273 -26.78321 -26.60888 -24.68214 -24.02354 -23.43213 -22.92624 -22.90484 -22.23458 -21.72082 -21.42482 -20.64037 -18.58841 -18.40706 -18.09557 -17.91468 -17.36331 -17.03627 -16.80491 -16.69710 -16.44459 -16.22651 -16.05536 -15.82495 -15.75138 -15.56002 -15.46706 -15.12685 -14.94679 -14.79704 -14.57684 -14.48955 -14.20195 -14.08430 -13.72478 -13.69864 -13.52222 -13.39452 -13.30244 -13.18686 -12.95984 -12.86433 -12.41475 -12.30693 -12.26420 -12.06527 -11.95748 -11.87653 -11.71322 -11.45793 -11.04496 -10.96447 -10.84803 -10.62125 -10.50192 -10.17975 -10.05577 -9.97096 -9.74790 -9.23938 -5.09989 -0.11943 0.35291 0.39943 0.59511 0.65739 1.24212 1.41210 1.55265 1.61401 1.88045 1.95709 2.19079 2.60036 2.86994 3.25619 3.40825 3.44597 3.48157 3.54361 3.58851 3.64925 3.71219 3.72880 3.88180 3.89237 3.92980 3.95256 4.00215 4.06728 4.17167 4.17795 4.28651 4.30301 4.34714 4.43362 4.50989 4.51198 4.52190 4.59647 4.65514 4.67742 4.68899 4.75324 4.83939 4.92709 4.96042 4.99276 4.99632 5.08657 5.16972 5.29842 5.31840 5.39037 5.39644 5.44990 5.51667 5.54603 5.57470 5.64060 5.90618 5.91359 6.04412 6.53884 6.72010 7.08439 7.26147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.060 4.060 3 Si 0.754 3.246 4 C -0.121 4.121 5 C -0.090 4.090 6 C -0.112 4.112 7 C -0.041 4.041 8 C -0.053 4.053 9 C -0.065 4.065 10 C -0.110 4.110 11 C 0.516 3.484 12 O -0.577 6.577 13 N -0.708 5.708 14 C 0.118 3.882 15 H 0.084 0.916 16 C -0.110 4.110 17 C -0.112 4.112 18 H 0.082 0.918 19 C 0.135 3.865 20 N -0.379 5.379 21 C 0.258 3.742 22 N -0.584 5.584 23 C 0.182 3.818 24 N -0.347 5.347 25 C -0.135 4.135 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.111 4.111 31 C -0.116 4.116 32 H 0.395 0.605 33 H 0.110 0.890 34 H -0.297 1.297 35 H -0.295 1.295 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.417 0.583 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.262 0.738 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.035 0.965 49 H 0.137 0.863 50 H 0.140 0.860 51 H 0.140 0.860 52 H 0.131 0.869 53 H 0.120 0.880 54 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -8.186 -0.888 8.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.171 4.171 3 Si 0.662 3.338 4 C -0.121 4.121 5 C -0.108 4.108 6 C -0.130 4.130 7 C -0.041 4.041 8 C -0.053 4.053 9 C -0.065 4.065 10 C -0.149 4.149 11 C 0.303 3.697 12 O -0.456 6.456 13 N -0.360 5.360 14 C 0.012 3.988 15 H 0.102 0.898 16 C -0.148 4.148 17 C -0.131 4.131 18 H 0.100 0.900 19 C 0.014 3.986 20 N -0.170 5.170 21 C -0.038 4.038 22 N -0.312 5.312 23 C -0.120 4.120 24 N -0.176 5.176 25 C -0.174 4.174 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.129 4.129 31 C -0.133 4.133 32 H 0.245 0.755 33 H 0.127 0.873 34 H -0.225 1.225 35 H -0.223 1.223 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.255 0.745 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.165 0.835 44 H 0.116 0.884 45 H 0.277 0.723 46 H 0.243 0.757 47 H 0.106 0.894 48 H 0.054 0.946 49 H 0.155 0.845 50 H 0.158 0.842 51 H 0.158 0.842 52 H 0.149 0.851 53 H 0.138 0.862 54 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.430 -7.127 -0.989 7.208 hybrid contribution 0.214 -0.208 -0.141 0.330 sum -0.216 -7.335 -1.130 7.425 Atomic orbital electron populations 1.86466 1.16835 1.82066 1.50526 1.24917 0.85424 1.09494 0.97265 0.93953 0.77886 0.76954 0.85000 1.20387 0.99730 0.95364 0.96636 1.21074 0.98454 0.93586 0.97726 1.21389 0.97724 1.00668 0.93231 1.18865 0.97942 0.93232 0.94049 1.18748 0.98499 0.95354 0.92686 1.19466 0.97092 0.95182 0.94794 1.20954 0.97131 1.01823 0.94971 1.20938 0.84810 0.82289 0.81643 1.90724 1.60207 1.37385 1.57318 1.45846 1.32532 1.43472 1.14181 1.22383 0.88105 0.93210 0.95067 0.89781 1.23271 1.01927 0.95119 0.94526 1.22529 0.98422 0.98821 0.93361 0.89979 1.22224 1.05221 0.77348 0.93761 1.50778 1.29689 1.07854 1.28633 1.26942 0.93079 0.93526 0.90277 1.70535 1.24169 1.08365 1.28149 1.26389 0.92892 1.01319 0.91442 1.78029 1.22759 0.91774 1.24998 1.23423 0.98453 0.98017 0.97530 1.21215 0.99577 1.00662 0.92079 1.21485 0.97864 0.96909 0.98060 1.21378 0.97816 0.96018 0.99207 1.21380 1.00388 1.00254 0.91618 1.21231 0.99569 0.94081 0.97987 1.21035 0.98534 0.99756 0.93998 0.75464 0.87306 1.22499 1.22256 0.84339 0.83724 0.84971 0.85939 0.74518 0.88997 0.86043 0.83527 0.88366 0.72291 0.75747 0.89387 0.94596 0.84477 0.84218 0.84209 0.85144 0.86188 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.30 12.83 -148.98 -1.91 -2.21 16 2 C -0.06 -0.04 2.80 71.24 0.20 0.16 16 3 Si 0.75 1.10 29.79 68.60 2.04 3.15 16 4 C -0.12 -0.15 5.36 -19.83 -0.11 -0.26 16 5 C -0.09 0.00 9.67 22.24 0.21 0.22 16 6 C -0.11 0.00 7.75 22.48 0.17 0.17 16 7 C -0.04 -0.15 4.90 -20.05 -0.10 -0.25 16 8 C -0.05 -0.27 5.40 -20.05 -0.11 -0.37 16 9 C -0.06 -0.23 4.38 -19.65 -0.09 -0.31 16 10 C -0.11 0.21 5.33 29.10 0.15 0.37 16 11 C 0.52 1.87 7.80 87.66 0.68 2.55 16 12 O -0.58 -8.15 15.67 -3.03 -0.05 -8.20 16 13 N -0.71 2.01 5.36 -440.04 -2.36 -0.35 16 14 C 0.12 -0.12 4.21 45.52 0.19 0.07 16 15 H 0.08 0.47 7.50 -2.38 -0.02 0.45 16 16 C -0.11 1.01 7.39 31.12 0.23 1.24 16 17 C -0.11 0.53 3.85 -10.21 -0.04 0.49 16 18 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 19 C 0.13 -1.05 6.39 86.38 0.55 -0.50 16 20 N -0.38 -0.19 3.69 -352.08 -1.30 -1.49 16 21 C 0.26 -0.13 12.63 180.36 2.28 2.14 16 22 N -0.58 -4.15 11.19 -204.00 -2.28 -6.43 16 23 C 0.18 1.35 13.03 180.77 2.36 3.71 16 24 N -0.35 -2.78 12.57 -61.24 -0.77 -3.55 16 25 C -0.14 -0.12 7.45 31.18 0.23 0.11 16 26 C -0.12 -0.33 9.67 22.24 0.21 -0.12 16 27 C -0.13 -0.32 10.04 22.31 0.22 -0.09 16 28 C -0.13 -0.37 10.03 22.24 0.22 -0.15 16 29 C -0.12 -0.52 9.62 22.48 0.22 -0.31 16 30 C -0.11 -0.54 9.62 22.48 0.22 -0.32 16 31 C -0.12 -0.30 8.65 22.24 0.19 -0.10 16 32 H 0.40 -2.78 8.70 -74.06 -0.64 -3.43 16 33 H 0.11 0.15 7.96 -2.39 -0.02 0.13 16 34 H -0.30 -2.55 7.11 99.48 0.71 -1.84 16 35 H -0.29 -2.44 7.11 99.48 0.71 -1.74 16 36 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.15 -0.59 7.13 -2.91 -0.02 -0.61 16 38 H 0.13 -1.04 8.05 -2.39 -0.02 -1.06 16 39 H 0.12 -0.63 4.69 -2.39 -0.01 -0.64 16 40 H 0.42 -4.21 8.71 -92.71 -0.81 -5.02 16 41 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.12 -1.78 8.07 -2.39 -0.02 -1.80 16 43 H 0.15 -2.33 8.09 -2.39 -0.02 -2.35 16 44 H 0.10 -0.86 7.86 -2.39 -0.02 -0.88 16 45 H 0.26 -2.96 8.06 -2.91 -0.02 -2.98 16 46 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 47 H 0.09 0.00 7.91 -2.39 -0.02 -0.01 16 48 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 50 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 51 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 52 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 53 H 0.12 0.65 8.06 -2.91 -0.02 0.63 16 54 H 0.14 -0.02 4.89 -2.91 -0.01 -0.03 16 Total: 0.00 -33.80 449.73 1.03 -32.77 By element: Atomic # 1 Polarization: -21.68 SS G_CDS: -0.46 Total: -22.14 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 8.11 Total: 8.45 kcal Atomic # 7 Polarization: -5.11 SS G_CDS: -6.71 Total: -11.82 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.96 Total: -10.41 kcal Atomic # 14 Polarization: 1.10 SS G_CDS: 2.04 Total: 3.15 kcal Total: -33.80 1.03 -32.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.227 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds