Wall clock time and date at job start Sun Mar 7 2021 00:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34706 * 125.66608 * 299.71871 * 4 2 1 6 6 C 1.40969 * 107.02828 * 179.85189 * 5 4 2 7 7 C 1.35937 * 106.74392 * 0.40425 * 6 5 4 8 8 C 1.47815 * 125.93165 * 179.72602 * 7 6 5 9 9 C 1.39801 * 119.99879 * 359.73085 * 8 7 6 10 10 C 1.37809 * 120.24365 * 179.76072 * 9 8 7 11 11 C 1.38776 * 120.24460 * 0.51097 * 10 9 8 12 12 O 1.35650 * 120.00398 * 179.76538 * 11 10 9 13 13 C 1.40245 * 119.99453 * 359.74136 * 11 10 9 14 14 C 1.47566 * 120.12227 * 180.02562 * 13 11 10 15 15 O 1.21586 * 120.00139 * 359.97438 * 14 13 11 16 16 N 1.34779 * 120.00336 * 179.97438 * 14 13 11 17 17 C 1.46494 * 120.00470 * 180.02562 * 16 14 13 18 18 H 1.09001 * 112.84797 * 25.33051 * 17 16 14 19 19 C 1.53776 * 113.61739 * 156.52794 * 17 16 14 20 20 C 1.53780 * 87.08301 * 139.98013 * 19 17 16 21 21 H 1.09003 * 113.61190 * 89.11501 * 20 19 17 22 22 C 1.53002 * 113.61641 * 219.93402 * 20 19 17 23 23 N 1.46493 * 109.47260 * 185.00222 * 22 20 19 24 24 C 1.34427 * 126.82899 * 124.99920 * 23 22 20 25 25 N 1.30831 * 108.08284 * 179.97438 * 24 23 22 26 26 C 1.33240 * 109.82567 * 0.02562 * 25 24 23 27 27 N 1.30716 * 108.94847 * 359.74473 * 26 25 24 28 28 C 1.53781 * 113.61243 * 254.13681 * 17 16 14 29 29 C 1.39215 * 119.99895 * 180.02562 * 8 7 6 30 30 O 1.34345 * 125.66280 * 120.02124 * 4 2 1 31 31 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 32 32 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 33 33 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 34 34 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 35 35 H 1.08000 * 126.48216 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.62766 * 180.19494 * 6 5 4 37 37 H 1.08004 * 119.88089 * 0.02562 * 9 8 7 38 38 H 1.08000 * 119.88543 * 180.25482 * 10 9 8 39 39 H 0.96701 * 113.99954 * 269.97356 * 12 11 10 40 40 H 0.97004 * 119.99365 * 359.97438 * 16 14 13 41 41 H 1.09000 * 113.61402 * 254.53012 * 19 17 16 42 42 H 1.08997 * 113.61802 * 25.43008 * 19 17 16 43 43 H 1.08999 * 109.47015 * 305.00224 * 22 20 19 44 44 H 1.08999 * 109.46885 * 64.99890 * 22 20 19 45 45 H 1.08005 * 125.95440 * 0.02562 * 24 23 22 46 46 H 1.08001 * 125.52294 * 179.97438 * 26 25 24 47 47 H 1.08997 * 113.61375 * 334.56042 * 28 17 16 48 48 H 1.08999 * 113.61162 * 105.47147 * 28 17 16 49 49 H 1.07996 * 120.12333 * 359.95855 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6815 -1.9942 -1.5531 6 6 2.3345 -2.2468 -2.7767 7 6 2.9604 -1.0937 -3.1320 8 6 3.7776 -0.8889 -4.3465 9 6 3.9653 -1.9407 -5.2482 10 6 4.7221 -1.7540 -6.3847 11 6 5.3124 -0.5237 -6.6371 12 8 6.0603 -0.3467 -7.7549 13 6 5.1351 0.5369 -5.7368 14 6 5.7610 1.8465 -6.0027 15 8 6.4322 2.0075 -7.0036 16 7 5.5887 2.8643 -5.1361 17 6 6.2096 4.1646 -5.4003 18 1 6.3943 4.3377 -6.4605 19 6 5.5054 5.3376 -4.6982 20 6 6.9059 5.9054 -4.4138 21 1 7.2824 6.5551 -5.2039 22 6 7.0460 6.5220 -3.0205 23 7 8.3688 7.1377 -2.8897 24 6 8.6352 8.4095 -2.5453 25 7 9.9342 8.5654 -2.5406 26 6 10.5279 7.4206 -2.8757 27 7 9.6110 6.5149 -3.0941 28 6 7.4260 4.4593 -4.5068 29 6 4.3655 0.3494 -4.5894 30 8 2.7072 -0.1702 -2.1849 31 1 -0.3933 0.4418 0.7651 32 1 1.7923 -0.5139 0.8900 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2084 35 1 1.0910 -2.6963 -0.9833 36 1 2.3395 -3.1778 -3.3242 37 1 3.5119 -2.9019 -5.0557 38 1 4.8599 -2.5693 -7.0794 39 1 6.9982 -0.5502 -7.6368 40 1 5.0529 2.7359 -4.3377 41 1 4.9117 5.9563 -5.3710 42 1 4.9618 5.0458 -3.7996 43 1 6.2765 7.2811 -2.8801 44 1 6.9310 5.7441 -2.2657 45 1 7.9043 9.1698 -2.3124 46 1 11.5940 7.2652 -2.9508 47 1 7.4084 3.9270 -3.5558 48 1 8.3805 4.3702 -5.0255 49 1 4.2252 1.1621 -3.8921 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:22 Heat of formation + Delta-G solvation = 68.981133 kcal Electronic energy + Delta-G solvation = -35959.196981 eV Core-core repulsion = 31051.459218 eV Total energy + Delta-G solvation = -4907.737763 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.77834 -42.98776 -41.69260 -40.59498 -39.07648 -38.12977 -37.83248 -35.50466 -34.41342 -34.06782 -32.86880 -32.32519 -32.12005 -30.20220 -29.13654 -26.92113 -26.43014 -25.80115 -24.38468 -23.51581 -22.97904 -22.88756 -22.33060 -21.61491 -21.38090 -20.85355 -19.61831 -18.99680 -18.79423 -18.42414 -17.86964 -17.47062 -17.14259 -16.87080 -16.73674 -16.66121 -16.27911 -16.06420 -15.89682 -15.86497 -15.72968 -15.43646 -15.08837 -14.76896 -14.65465 -14.59383 -14.44060 -14.17414 -13.97036 -13.83042 -13.67176 -13.62180 -13.26841 -13.18860 -13.17172 -12.95495 -12.75963 -12.35965 -12.19231 -12.07790 -11.86198 -11.55388 -11.12214 -10.92944 -10.81553 -10.72676 -10.72164 -10.61927 -10.43730 -10.37090 -10.07174 -8.96209 -5.23304 -0.62293 -0.29093 0.68486 0.68614 1.01002 1.30149 1.34706 1.50664 1.54419 1.85813 1.88281 2.00735 2.06481 2.56842 3.02200 3.07616 3.10563 3.24088 3.34330 3.39690 3.44336 3.49814 3.54385 3.60309 3.72702 3.81794 3.89972 3.91020 3.95763 3.98385 4.05602 4.08077 4.16342 4.30915 4.38325 4.46086 4.50991 4.53849 4.55634 4.60761 4.70422 4.77069 4.79288 4.93983 4.98247 5.02247 5.07376 5.10088 5.30355 5.34684 5.38446 5.43592 5.49653 5.81610 5.92590 6.36159 6.37052 6.62339 7.15092 7.15206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.035 4.035 3 Si 0.705 3.295 4 C -0.010 4.010 5 C -0.163 4.163 6 C -0.186 4.186 7 C 0.033 3.967 8 C -0.034 4.034 9 C -0.052 4.052 10 C -0.147 4.147 11 C 0.181 3.819 12 O -0.475 6.475 13 C -0.164 4.164 14 C 0.562 3.438 15 O -0.514 6.514 16 N -0.720 5.720 17 C 0.124 3.876 18 H 0.119 0.881 19 C -0.138 4.138 20 C -0.118 4.118 21 H 0.102 0.898 22 C 0.140 3.860 23 N -0.379 5.379 24 C 0.252 3.748 25 N -0.547 5.547 26 C 0.197 3.803 27 N -0.312 5.312 28 C -0.134 4.134 29 C -0.055 4.055 30 O -0.174 6.174 31 H 0.391 0.609 32 H 0.095 0.905 33 H -0.252 1.252 34 H -0.249 1.249 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.400 0.600 40 H 0.398 0.602 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.218 0.782 46 H 0.217 0.783 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -0.578 7.009 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.145 4.145 3 Si 0.605 3.395 4 C -0.059 4.059 5 C -0.182 4.182 6 C -0.205 4.205 7 C -0.016 4.016 8 C -0.034 4.034 9 C -0.070 4.070 10 C -0.166 4.166 11 C 0.134 3.866 12 O -0.287 6.287 13 C -0.168 4.168 14 C 0.349 3.651 15 O -0.390 6.390 16 N -0.372 5.372 17 C 0.019 3.981 18 H 0.136 0.864 19 C -0.177 4.177 20 C -0.138 4.138 21 H 0.120 0.880 22 C 0.018 3.982 23 N -0.170 5.170 24 C -0.045 4.045 25 N -0.273 5.273 26 C -0.106 4.106 27 N -0.140 5.140 28 C -0.173 4.173 29 C -0.074 4.074 30 O -0.072 6.072 31 H 0.240 0.760 32 H 0.112 0.888 33 H -0.176 1.176 34 H -0.173 1.173 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.259 0.741 40 H 0.234 0.766 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.234 0.766 46 H 0.233 0.767 47 H 0.104 0.896 48 H 0.097 0.903 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.779 -0.183 4.897 6.188 hybrid contribution -0.200 -0.876 0.570 1.064 sum -3.978 -1.059 5.467 6.844 Atomic orbital electron populations 1.86464 1.16300 1.82009 1.50225 1.23758 0.86182 1.11587 0.92930 0.95234 0.80889 0.76455 0.86963 1.21347 0.99043 0.93262 0.92260 1.21539 1.03090 0.95893 0.97713 1.21872 1.01577 0.98861 0.98145 1.20296 1.02651 0.88222 0.90461 1.17578 0.99142 0.94613 0.92058 1.21129 0.95634 0.98224 0.92025 1.21407 1.00039 0.97094 0.98029 1.18592 0.92693 0.90648 0.84700 1.84749 1.23843 1.90311 1.29748 1.20289 1.04289 0.95526 0.96688 1.18007 0.80496 0.83604 0.83007 1.90838 1.38804 1.82814 1.26523 1.45909 1.53889 1.11474 1.25883 1.22522 0.93533 0.81027 1.01005 0.86350 1.23383 0.95994 0.96963 1.01342 1.22653 0.97449 0.97242 0.96471 0.88024 1.21859 0.78954 0.99179 0.98188 1.50579 1.06712 1.08989 1.50760 1.26132 0.94683 0.87452 0.96210 1.70567 1.04779 1.27479 1.24525 1.26078 1.00923 0.86271 0.97349 1.78097 0.88946 1.21807 1.25131 1.23489 0.98973 0.94268 1.00592 1.21252 0.94217 0.96584 0.95349 1.83921 1.55705 1.39425 1.28131 0.76006 0.88766 1.17627 1.17279 0.82564 0.82520 0.84096 0.83500 0.74090 0.76635 0.89751 0.89129 0.87634 0.89144 0.76552 0.76718 0.89586 0.90256 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.67 12.85 -35.23 -0.45 0.21 16 2 C -0.03 0.04 2.97 36.01 0.11 0.15 16 3 Si 0.71 -1.58 32.10 -169.99 -5.46 -7.04 16 4 C -0.01 -0.02 6.25 -35.56 -0.22 -0.24 16 5 C -0.16 -0.26 10.77 -39.80 -0.43 -0.69 16 6 C -0.19 -0.21 10.26 -39.37 -0.40 -0.62 16 7 C 0.03 0.07 7.03 -36.49 -0.26 -0.19 16 8 C -0.03 -0.04 5.87 -105.03 -0.62 -0.65 16 9 C -0.05 0.02 9.54 -39.15 -0.37 -0.35 16 10 C -0.15 0.02 9.96 -39.54 -0.39 -0.37 16 11 C 0.18 0.34 6.72 -38.63 -0.26 0.08 16 12 O -0.47 -1.20 11.55 -40.60 -0.47 -1.67 16 13 C -0.16 -0.34 5.88 -104.90 -0.62 -0.96 16 14 C 0.56 1.80 7.76 -12.46 -0.10 1.71 16 15 O -0.51 -3.34 14.76 -16.66 -0.25 -3.58 16 16 N -0.72 -0.21 5.31 -54.05 -0.29 -0.49 16 17 C 0.12 -0.04 4.21 -67.12 -0.28 -0.32 16 18 H 0.12 0.19 7.50 -51.93 -0.39 -0.20 16 19 C -0.14 0.43 7.39 -25.92 -0.19 0.24 16 20 C -0.12 0.27 3.85 -89.71 -0.35 -0.08 16 21 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 22 C 0.14 -0.43 6.39 -4.04 -0.03 -0.45 16 23 N -0.38 -0.07 3.69 -62.63 -0.23 -0.31 16 24 C 0.25 -0.01 12.63 -90.66 -1.14 -1.15 16 25 N -0.55 -1.62 11.19 -15.83 -0.18 -1.80 16 26 C 0.20 0.48 13.03 -91.81 -1.20 -0.72 16 27 N -0.31 -0.88 12.57 29.29 0.37 -0.51 16 28 C -0.13 0.05 7.45 -25.83 -0.19 -0.14 16 29 C -0.06 -0.06 9.20 -38.78 -0.36 -0.41 16 30 O -0.17 -0.51 8.78 4.56 0.04 -0.47 16 31 H 0.39 -2.62 8.74 45.56 0.40 -2.22 16 32 H 0.09 -0.33 7.96 -51.93 -0.41 -0.75 16 33 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 34 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 35 H 0.16 0.00 8.06 -52.49 -0.42 -0.43 16 36 H 0.16 -0.23 7.25 -52.49 -0.38 -0.61 16 37 H 0.14 -0.40 6.96 -52.48 -0.37 -0.76 16 38 H 0.15 -0.31 8.06 -52.49 -0.42 -0.73 16 39 H 0.40 -0.49 9.06 45.56 0.41 -0.08 16 40 H 0.40 -0.70 6.74 -40.82 -0.27 -0.98 16 41 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 42 H 0.09 -0.40 8.07 -51.93 -0.42 -0.82 16 43 H 0.11 -0.63 8.09 -51.93 -0.42 -1.05 16 44 H 0.09 -0.30 7.86 -51.93 -0.41 -0.71 16 45 H 0.22 -0.98 8.06 -52.48 -0.42 -1.40 16 46 H 0.22 -0.11 8.06 -52.49 -0.42 -0.54 16 47 H 0.09 -0.04 7.91 -51.93 -0.41 -0.45 16 48 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 49 H 0.13 -0.06 6.24 -52.49 -0.33 -0.39 16 LS Contribution 423.21 15.07 6.38 6.38 Total: 0.00 -14.68 423.21 -12.98 -27.66 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: -5.15 Total: -13.21 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -7.30 Total: -5.17 kcal Atomic # 7 Polarization: -2.79 SS G_CDS: -0.33 Total: -3.11 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -1.13 Total: -5.51 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.46 Total: -7.04 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -14.68 -12.98 -27.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.645 kcal (2) G-P(sol) polarization free energy of solvation -14.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds