Wall clock time and date at job start Sun Mar 7 2021 00:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34706 * 125.66608 * 299.71871 * 4 2 1 6 6 C 1.40969 * 107.02828 * 179.85189 * 5 4 2 7 7 C 1.35937 * 106.74392 * 0.40425 * 6 5 4 8 8 C 1.47815 * 125.93165 * 179.72602 * 7 6 5 9 9 C 1.39801 * 119.99879 * 359.73085 * 8 7 6 10 10 C 1.37809 * 120.24365 * 179.76072 * 9 8 7 11 11 C 1.38776 * 120.24460 * 0.51097 * 10 9 8 12 12 O 1.35650 * 120.00398 * 179.76538 * 11 10 9 13 13 C 1.40245 * 119.99453 * 359.74136 * 11 10 9 14 14 C 1.47566 * 120.12227 * 180.02562 * 13 11 10 15 15 O 1.21586 * 120.00139 * 359.97438 * 14 13 11 16 16 N 1.34779 * 120.00336 * 179.97438 * 14 13 11 17 17 C 1.46494 * 120.00470 * 180.02562 * 16 14 13 18 18 H 1.09001 * 112.84797 * 25.33051 * 17 16 14 19 19 C 1.53776 * 113.61739 * 156.52794 * 17 16 14 20 20 C 1.53780 * 87.08301 * 139.98013 * 19 17 16 21 21 H 1.09003 * 113.61190 * 89.11501 * 20 19 17 22 22 C 1.53002 * 113.61641 * 219.93402 * 20 19 17 23 23 N 1.46493 * 109.47260 * 185.00222 * 22 20 19 24 24 C 1.34427 * 126.82899 * 124.99920 * 23 22 20 25 25 N 1.30831 * 108.08284 * 179.97438 * 24 23 22 26 26 C 1.33240 * 109.82567 * 0.02562 * 25 24 23 27 27 N 1.30716 * 108.94847 * 359.74473 * 26 25 24 28 28 C 1.53781 * 113.61243 * 254.13681 * 17 16 14 29 29 C 1.39215 * 119.99895 * 180.02562 * 8 7 6 30 30 O 1.34345 * 125.66280 * 120.02124 * 4 2 1 31 31 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 32 32 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 33 33 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 34 34 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 35 35 H 1.08000 * 126.48216 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.62766 * 180.19494 * 6 5 4 37 37 H 1.08004 * 119.88089 * 0.02562 * 9 8 7 38 38 H 1.08000 * 119.88543 * 180.25482 * 10 9 8 39 39 H 0.96701 * 113.99954 * 269.97356 * 12 11 10 40 40 H 0.97004 * 119.99365 * 359.97438 * 16 14 13 41 41 H 1.09000 * 113.61402 * 254.53012 * 19 17 16 42 42 H 1.08997 * 113.61802 * 25.43008 * 19 17 16 43 43 H 1.08999 * 109.47015 * 305.00224 * 22 20 19 44 44 H 1.08999 * 109.46885 * 64.99890 * 22 20 19 45 45 H 1.08005 * 125.95440 * 0.02562 * 24 23 22 46 46 H 1.08001 * 125.52294 * 179.97438 * 26 25 24 47 47 H 1.08997 * 113.61375 * 334.56042 * 28 17 16 48 48 H 1.08999 * 113.61162 * 105.47147 * 28 17 16 49 49 H 1.07996 * 120.12333 * 359.95855 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6815 -1.9942 -1.5531 6 6 2.3345 -2.2468 -2.7767 7 6 2.9604 -1.0937 -3.1320 8 6 3.7776 -0.8889 -4.3465 9 6 3.9653 -1.9407 -5.2482 10 6 4.7221 -1.7540 -6.3847 11 6 5.3124 -0.5237 -6.6371 12 8 6.0603 -0.3467 -7.7549 13 6 5.1351 0.5369 -5.7368 14 6 5.7610 1.8465 -6.0027 15 8 6.4322 2.0075 -7.0036 16 7 5.5887 2.8643 -5.1361 17 6 6.2096 4.1646 -5.4003 18 1 6.3943 4.3377 -6.4605 19 6 5.5054 5.3376 -4.6982 20 6 6.9059 5.9054 -4.4138 21 1 7.2824 6.5551 -5.2039 22 6 7.0460 6.5220 -3.0205 23 7 8.3688 7.1377 -2.8897 24 6 8.6352 8.4095 -2.5453 25 7 9.9342 8.5654 -2.5406 26 6 10.5279 7.4206 -2.8757 27 7 9.6110 6.5149 -3.0941 28 6 7.4260 4.4593 -4.5068 29 6 4.3655 0.3494 -4.5894 30 8 2.7072 -0.1702 -2.1849 31 1 -0.3933 0.4418 0.7651 32 1 1.7923 -0.5139 0.8900 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2084 35 1 1.0910 -2.6963 -0.9833 36 1 2.3395 -3.1778 -3.3242 37 1 3.5119 -2.9019 -5.0557 38 1 4.8599 -2.5693 -7.0794 39 1 6.9982 -0.5502 -7.6368 40 1 5.0529 2.7359 -4.3377 41 1 4.9117 5.9563 -5.3710 42 1 4.9618 5.0458 -3.7996 43 1 6.2765 7.2811 -2.8801 44 1 6.9310 5.7441 -2.2657 45 1 7.9043 9.1698 -2.3124 46 1 11.5940 7.2652 -2.9508 47 1 7.4084 3.9270 -3.5558 48 1 8.3805 4.3702 -5.0255 49 1 4.2252 1.1621 -3.8921 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:20 Heat of formation + Delta-G solvation = 66.314706 kcal Electronic energy + Delta-G solvation = -35959.312606 eV Core-core repulsion = 31051.459218 eV Total energy + Delta-G solvation = -4907.853388 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.83277 -43.00399 -41.80246 -40.59172 -39.20842 -38.10720 -37.78327 -35.56317 -34.47742 -34.13207 -32.89716 -32.35356 -32.17664 -30.19288 -29.07323 -26.84088 -26.40627 -25.85038 -24.39122 -23.53862 -23.04140 -22.88272 -22.34274 -21.70998 -21.42201 -20.82555 -19.67935 -19.06165 -18.64723 -18.38172 -17.96654 -17.48012 -17.18716 -16.82972 -16.79271 -16.70731 -16.29116 -16.12696 -15.97937 -15.81116 -15.72394 -15.48586 -15.07281 -14.77756 -14.62988 -14.54463 -14.39747 -14.19685 -13.97371 -13.76370 -13.67613 -13.56465 -13.28791 -13.21608 -13.21392 -12.92935 -12.67779 -12.32717 -12.18014 -12.04373 -11.94379 -11.49900 -11.18608 -11.03389 -10.98208 -10.81408 -10.69514 -10.60868 -10.44433 -10.36113 -10.14992 -9.01102 -5.06981 -0.67810 -0.34451 0.64186 0.68609 1.16350 1.34185 1.42030 1.49093 1.65288 1.74516 1.92826 1.98588 1.99637 2.50118 2.99611 3.12086 3.22363 3.30943 3.37151 3.50645 3.52081 3.56664 3.66504 3.71460 3.73904 3.87262 3.91022 3.94446 4.07797 4.08841 4.12414 4.23102 4.26801 4.37239 4.51399 4.52146 4.54203 4.59385 4.63556 4.69397 4.70829 4.78485 4.87554 4.91278 4.94349 5.02301 5.06705 5.09706 5.30353 5.34818 5.39791 5.41983 5.43937 5.86894 5.92734 6.27833 6.62685 6.83192 6.98735 7.11740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.044 4.044 3 Si 0.801 3.199 4 C -0.031 4.031 5 C -0.177 4.177 6 C -0.185 4.185 7 C 0.014 3.986 8 C -0.043 4.043 9 C -0.043 4.043 10 C -0.143 4.143 11 C 0.165 3.835 12 O -0.493 6.493 13 C -0.180 4.180 14 C 0.556 3.444 15 O -0.558 6.558 16 N -0.707 5.707 17 C 0.113 3.887 18 H 0.094 0.906 19 C -0.117 4.117 20 C -0.108 4.108 21 H 0.088 0.912 22 C 0.135 3.865 23 N -0.380 5.380 24 C 0.258 3.742 25 N -0.585 5.585 26 C 0.184 3.816 27 N -0.346 5.346 28 C -0.134 4.134 29 C -0.056 4.056 30 O -0.191 6.191 31 H 0.413 0.587 32 H 0.121 0.879 33 H -0.288 1.288 34 H -0.299 1.299 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.411 0.589 40 H 0.409 0.591 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.146 0.854 44 H 0.097 0.903 45 H 0.260 0.740 46 H 0.229 0.771 47 H 0.088 0.912 48 H 0.048 0.952 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -0.881 8.880 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.152 4.152 3 Si 0.706 3.294 4 C -0.080 4.080 5 C -0.196 4.196 6 C -0.204 4.204 7 C -0.035 4.035 8 C -0.044 4.044 9 C -0.061 4.061 10 C -0.161 4.161 11 C 0.118 3.882 12 O -0.307 6.307 13 C -0.183 4.183 14 C 0.344 3.656 15 O -0.437 6.437 16 N -0.359 5.359 17 C 0.009 3.991 18 H 0.112 0.888 19 C -0.155 4.155 20 C -0.127 4.127 21 H 0.107 0.893 22 C 0.015 3.985 23 N -0.170 5.170 24 C -0.038 4.038 25 N -0.313 5.313 26 C -0.119 4.119 27 N -0.174 5.174 28 C -0.173 4.173 29 C -0.075 4.075 30 O -0.090 6.090 31 H 0.266 0.734 32 H 0.139 0.861 33 H -0.215 1.215 34 H -0.227 1.227 35 H 0.187 0.813 36 H 0.199 0.801 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.272 0.728 40 H 0.247 0.753 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.164 0.836 44 H 0.115 0.885 45 H 0.276 0.724 46 H 0.246 0.754 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.983 -0.494 6.835 9.097 hybrid contribution 0.439 -0.805 -0.022 0.917 sum -5.544 -1.299 6.812 8.879 Atomic orbital electron populations 1.86408 1.16160 1.82634 1.52047 1.24012 0.86467 1.12233 0.92535 0.94298 0.77222 0.73829 0.84045 1.22086 0.98916 0.94085 0.92946 1.21845 1.03409 0.96160 0.98159 1.22231 1.00663 0.99407 0.98080 1.20555 1.03492 0.88650 0.90814 1.17745 0.99278 0.95034 0.92311 1.21441 0.94665 0.98874 0.91099 1.21613 0.99284 0.96757 0.98425 1.18888 0.93157 0.91509 0.84636 1.84703 1.24911 1.90637 1.30427 1.20279 1.05266 0.95192 0.97594 1.18311 0.80023 0.84489 0.82755 1.90804 1.40918 1.83605 1.28374 1.45868 1.53236 1.11148 1.25637 1.22581 0.94697 0.81827 1.00040 0.88839 1.23311 0.95477 0.94872 1.01861 1.22509 0.97587 0.95639 0.97007 0.89320 1.22184 0.78416 1.00645 0.97289 1.50749 1.06815 1.09195 1.50292 1.26931 0.94595 0.87907 0.94398 1.70548 1.06491 1.28108 1.26106 1.26443 1.01785 0.86333 0.97305 1.78023 0.90225 1.22969 1.26169 1.23442 0.97447 0.96244 1.00159 1.21311 0.93972 0.97163 0.95029 1.83913 1.56245 1.40173 1.28684 0.73355 0.86109 1.21502 1.22704 0.81287 0.80146 0.81350 0.81366 0.72832 0.75330 0.88783 0.86811 0.83602 0.88484 0.72400 0.75444 0.89332 0.93259 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.07 12.85 -148.98 -1.91 0.16 16 2 C -0.04 0.15 2.97 71.24 0.21 0.36 16 3 Si 0.80 -3.86 32.10 68.60 2.20 -1.66 16 4 C -0.03 -0.12 6.25 24.87 0.16 0.04 16 5 C -0.18 -0.44 10.77 22.13 0.24 -0.20 16 6 C -0.19 -0.27 10.26 22.40 0.23 -0.04 16 7 C 0.01 0.06 7.03 24.27 0.17 0.23 16 8 C -0.04 -0.10 5.87 -20.13 -0.12 -0.22 16 9 C -0.04 0.07 9.54 22.55 0.22 0.29 16 10 C -0.14 0.08 9.96 22.30 0.22 0.30 16 11 C 0.16 0.84 6.72 22.89 0.15 0.99 16 12 O -0.49 -3.46 11.55 -68.66 -0.79 -4.26 16 13 C -0.18 -1.06 5.88 -20.04 -0.12 -1.18 16 14 C 0.56 4.93 7.76 86.70 0.67 5.61 16 15 O -0.56 -9.10 14.76 17.00 0.25 -8.85 16 16 N -0.71 -1.58 5.31 -443.18 -2.35 -3.94 16 17 C 0.11 0.13 4.21 45.52 0.19 0.32 16 18 H 0.09 0.60 7.50 -2.39 -0.02 0.58 16 19 C -0.12 0.79 7.39 31.12 0.23 1.02 16 20 C -0.11 0.46 3.85 -10.21 -0.04 0.42 16 21 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 22 C 0.14 -1.00 6.39 86.38 0.55 -0.45 16 23 N -0.38 -0.04 3.69 -352.07 -1.30 -1.34 16 24 C 0.26 -0.24 12.63 180.36 2.28 2.04 16 25 N -0.58 -3.74 11.19 -204.00 -2.28 -6.02 16 26 C 0.18 1.15 13.03 180.76 2.36 3.50 16 27 N -0.35 -2.39 12.57 -61.24 -0.77 -3.16 16 28 C -0.13 -0.14 7.45 31.18 0.23 0.09 16 29 C -0.06 -0.17 9.20 22.79 0.21 0.04 16 30 O -0.19 -1.21 8.78 -6.61 -0.06 -1.27 16 31 H 0.41 -6.26 8.74 -74.05 -0.65 -6.91 16 32 H 0.12 -1.09 7.96 -2.39 -0.02 -1.11 16 33 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 34 H -0.30 -1.04 7.11 99.48 0.71 -0.33 16 35 H 0.17 -0.19 8.06 -2.91 -0.02 -0.21 16 36 H 0.18 -0.86 7.25 -2.91 -0.02 -0.88 16 37 H 0.17 -1.30 6.96 -2.91 -0.02 -1.32 16 38 H 0.17 -0.89 8.06 -2.91 -0.02 -0.91 16 39 H 0.41 -0.04 9.06 -74.06 -0.67 -0.71 16 40 H 0.41 -1.08 6.74 -92.71 -0.62 -1.71 16 41 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.11 -1.25 8.07 -2.39 -0.02 -1.27 16 43 H 0.15 -2.23 8.09 -2.39 -0.02 -2.25 16 44 H 0.10 -0.79 7.86 -2.39 -0.02 -0.81 16 45 H 0.26 -3.00 8.06 -2.91 -0.02 -3.02 16 46 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 47 H 0.09 0.04 7.91 -2.39 -0.02 0.02 16 48 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.14 0.03 6.24 -2.91 -0.02 0.02 16 Total: 0.00 -38.10 423.21 0.17 -37.92 By element: Atomic # 1 Polarization: -19.90 SS G_CDS: -0.85 Total: -20.75 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 8.04 Total: 13.16 kcal Atomic # 7 Polarization: -7.75 SS G_CDS: -6.71 Total: -14.46 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -2.51 Total: -14.22 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.20 Total: -1.66 kcal Total: -38.10 0.17 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.238 kcal (2) G-P(sol) polarization free energy of solvation -38.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds