Wall clock time and date at job start Sun Mar 7 2021 00:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47128 * 2 1 4 4 C 1.50704 * 109.47292 * 239.99652 * 2 1 3 5 5 C 1.34193 * 126.53601 * 105.00128 * 4 2 1 6 6 N 1.36866 * 109.96441 * 180.02562 * 5 4 2 7 7 C 1.37398 * 109.98119 * 359.97438 * 6 5 4 8 8 C 1.39330 * 133.25010 * 179.97438 * 7 6 5 9 9 C 1.36355 * 120.23443 * 180.02562 * 8 7 6 10 10 C 1.40164 * 120.67276 * 0.02562 * 9 8 7 11 11 C 1.47653 * 119.97458 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00000 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99996 * 359.72613 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27900 * 13 11 10 15 15 H 1.08995 * 112.84615 * 334.66197 * 14 13 11 16 16 C 1.53775 * 113.61442 * 105.85931 * 14 13 11 17 17 C 1.53957 * 87.02116 * 139.94966 * 16 14 13 18 18 H 1.08999 * 113.61746 * 89.19456 * 17 16 14 19 19 C 1.53000 * 113.66911 * 220.07046 * 17 16 14 20 20 N 1.46499 * 109.46581 * 272.55537 * 19 17 16 21 21 C 1.34435 * 126.81874 * 125.00607 * 20 19 17 22 22 N 1.30838 * 108.07263 * 179.97438 * 21 20 19 23 23 C 1.33234 * 109.83077 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94718 * 359.75540 * 23 22 21 25 25 C 1.53781 * 87.10871 * 334.63585 * 17 16 14 26 26 C 1.39188 * 120.05314 * 0.23181 * 10 9 8 27 27 C 1.39237 * 119.39280 * 359.49549 * 26 10 9 28 28 H 0.96699 * 114.00205 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.46843 * 120.00130 * 2 1 3 30 30 H 1.48501 * 110.00111 * 298.67613 * 3 2 1 31 31 H 1.48500 * 110.00198 * 60.00117 * 3 2 1 32 32 H 1.07998 * 125.01849 * 0.02562 * 5 4 2 33 33 H 0.96994 * 125.00990 * 180.02562 * 6 5 4 34 34 H 1.07991 * 119.88227 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.66420 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99736 * 0.27174 * 13 11 10 37 37 H 1.08995 * 113.61838 * 254.52898 * 16 14 13 38 38 H 1.09007 * 113.61723 * 25.43343 * 16 14 13 39 39 H 1.08997 * 109.47331 * 32.55927 * 19 17 16 40 40 H 1.09003 * 109.46934 * 152.55887 * 19 17 16 41 41 H 1.07992 * 125.96168 * 359.92304 * 21 20 19 42 42 H 1.08005 * 125.52546 * 179.97438 * 23 22 21 43 43 H 1.08999 * 113.61621 * 270.81069 * 25 17 16 44 44 H 1.09000 * 113.69278 * 139.91587 * 25 17 16 45 45 H 1.07999 * 120.30634 * 179.72553 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.4608 -0.1387 -2.3229 6 7 2.8023 -1.1005 -3.2348 7 6 2.4950 -2.3455 -2.7415 8 6 2.6331 -3.6350 -3.2508 9 6 2.2291 -4.7103 -2.5162 10 6 1.6703 -4.5368 -1.2425 11 6 1.2375 -5.7121 -0.4605 12 8 0.7524 -5.5622 0.6442 13 7 1.3748 -6.9508 -0.9738 14 6 0.9397 -8.1165 -0.2003 15 1 0.9429 -7.9363 0.8746 16 6 -0.3654 -8.7455 -0.7157 17 6 0.2788 -10.1156 -0.4364 18 1 0.1008 -10.4841 0.5739 19 6 -0.0157 -11.1635 -1.5116 20 7 -1.2725 -11.8470 -1.1959 21 6 -2.3470 -11.9671 -1.9948 22 7 -3.2598 -12.6455 -1.3481 23 6 -2.8066 -12.9746 -0.1392 24 7 -1.5916 -12.5126 -0.0012 25 6 1.6410 -9.4229 -0.6082 26 6 1.5182 -3.2572 -0.7164 27 6 1.9352 -2.1578 -1.4621 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8900 30 1 1.5880 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.5973 0.9236 -2.4621 33 1 3.2030 -0.9286 -4.1013 34 1 3.0616 -3.7833 -4.2309 35 1 2.3408 -5.7058 -2.9198 36 1 1.7615 -7.0703 -1.8553 37 1 -1.2305 -8.5326 -0.0878 38 1 -0.5525 -8.5585 -1.7732 39 1 -0.1018 -10.6743 -2.4818 40 1 0.7957 -11.8907 -1.5421 41 1 -2.4406 -11.5718 -2.9954 42 1 -3.3530 -13.5355 0.6047 43 1 2.0036 -9.4214 -1.6361 44 1 2.3945 -9.7552 0.1059 45 1 1.0841 -3.1186 0.2627 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:25 Heat of formation + Delta-G solvation = 116.173056 kcal Electronic energy + Delta-G solvation = -29537.237362 eV Core-core repulsion = 25331.710608 eV Total energy + Delta-G solvation = -4205.526754 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.97969 -42.46275 -41.25735 -39.68347 -38.05063 -37.46078 -35.50248 -34.05735 -33.28135 -32.16147 -30.91844 -30.50595 -28.93516 -26.76246 -26.50432 -25.50885 -23.86518 -23.47462 -22.93285 -22.33683 -21.59485 -20.92960 -20.44589 -19.33952 -18.54502 -18.28384 -17.59359 -17.55674 -17.03118 -16.69659 -16.34001 -16.25396 -16.00938 -15.91375 -15.65420 -15.50840 -15.14851 -15.03170 -14.86859 -14.78420 -14.45424 -14.12859 -13.76569 -13.73061 -13.54286 -13.46878 -13.20963 -12.74741 -12.59608 -12.52421 -12.38653 -12.13782 -11.87588 -11.80639 -11.53845 -11.09715 -10.96592 -10.80669 -10.78909 -10.51969 -10.49028 -10.13384 -9.32633 -8.81567 -4.88085 -0.16035 0.21180 0.70916 1.34130 1.46392 1.51191 1.60240 1.82086 2.00755 2.01488 2.09681 2.13746 2.88118 3.36345 3.46504 3.48211 3.50970 3.54302 3.62349 3.71251 3.79556 3.84423 3.89194 3.91249 4.14304 4.15072 4.17946 4.37201 4.38730 4.46699 4.52291 4.54936 4.60603 4.68564 4.73979 4.78164 4.81545 4.92995 5.00902 5.02444 5.19719 5.27615 5.31716 5.35515 5.45867 5.47392 5.55663 5.57707 5.96602 5.98828 6.51746 6.55194 6.61559 7.13729 7.19241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.064 4.064 3 Si 0.788 3.212 4 C -0.218 4.218 5 C 0.082 3.918 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.064 4.064 10 C -0.179 4.179 11 C 0.558 3.442 12 O -0.594 6.594 13 N -0.697 5.697 14 C 0.114 3.886 15 H 0.081 0.919 16 C -0.143 4.143 17 C -0.115 4.115 18 H 0.079 0.921 19 C 0.136 3.864 20 N -0.377 5.377 21 C 0.257 3.743 22 N -0.586 5.586 23 C 0.185 3.815 24 N -0.351 5.351 25 C -0.112 4.112 26 C -0.025 4.025 27 C -0.128 4.128 28 H 0.384 0.616 29 H 0.098 0.902 30 H -0.258 1.258 31 H -0.312 1.312 32 H 0.209 0.791 33 H 0.439 0.561 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.419 0.581 37 H 0.040 0.960 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.260 0.740 42 H 0.230 0.770 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 2.702 -12.543 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.171 4.171 3 Si 0.691 3.309 4 C -0.225 4.225 5 C -0.046 4.046 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.144 4.144 9 C -0.084 4.084 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.476 6.476 13 N -0.349 5.349 14 C 0.009 3.991 15 H 0.100 0.900 16 C -0.181 4.181 17 C -0.135 4.135 18 H 0.097 0.903 19 C 0.016 3.984 20 N -0.168 5.168 21 C -0.039 4.039 22 N -0.314 5.314 23 C -0.117 4.117 24 N -0.180 5.180 25 C -0.151 4.151 26 C -0.045 4.045 27 C -0.133 4.133 28 H 0.233 0.767 29 H 0.116 0.884 30 H -0.183 1.183 31 H -0.240 1.240 32 H 0.225 0.775 33 H 0.280 0.720 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.258 0.742 37 H 0.059 0.941 38 H 0.131 0.869 39 H 0.162 0.838 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.246 0.754 43 H 0.147 0.853 44 H 0.101 0.899 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.914 3.210 -10.877 14.424 hybrid contribution -1.320 -0.129 -0.269 1.353 sum 7.594 3.081 -11.146 13.835 Atomic orbital electron populations 1.86600 1.19443 1.80632 1.49920 1.24777 0.82707 1.12500 0.97161 0.94095 0.89593 0.69967 0.77235 1.20757 1.11247 0.91584 0.98923 1.22162 0.98451 0.95726 0.88275 1.41757 1.53774 1.03175 1.18720 1.18660 0.99672 0.87959 0.93502 1.20095 1.04278 0.87874 1.02199 1.20904 0.95697 1.00420 0.91346 1.19582 1.09054 0.92006 0.97664 1.18598 0.77083 0.84408 0.85104 1.90775 1.47069 1.86855 1.22900 1.45674 1.63409 1.04305 1.21473 1.22426 0.96049 0.84209 0.96385 0.90035 1.23616 0.96699 0.94967 1.02861 1.22549 0.97979 0.93353 0.99608 0.90299 1.22230 0.81851 0.94313 1.00003 1.50751 1.15323 1.40247 1.10463 1.26891 0.82370 0.94949 0.99736 1.70535 1.32736 1.20749 1.07405 1.26430 0.90836 0.99189 0.95285 1.77952 1.17897 1.16522 1.05623 1.23306 0.95447 0.91318 1.05002 1.20600 0.94562 0.90992 0.98301 1.19178 1.05157 0.93440 0.95516 0.76698 0.88392 1.18318 1.24040 0.77465 0.71952 0.81833 0.81672 0.74166 0.94100 0.86940 0.83775 0.87842 0.72484 0.75356 0.85287 0.89882 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.96 12.88 -148.98 -1.92 -5.88 16 2 C -0.06 -0.17 3.06 71.24 0.22 0.04 16 3 Si 0.79 -2.37 30.82 68.60 2.11 -0.26 16 4 C -0.22 -0.32 5.58 -18.61 -0.10 -0.43 16 5 C 0.08 -0.46 10.43 82.98 0.87 0.41 16 6 N -0.57 3.99 6.05 -187.48 -1.13 2.85 16 7 C 0.11 -0.13 7.27 39.19 0.28 0.16 16 8 C -0.12 0.64 10.00 22.09 0.22 0.86 16 9 C -0.06 0.25 9.46 22.30 0.21 0.46 16 10 C -0.18 -0.91 5.87 -20.09 -0.12 -1.03 16 11 C 0.56 4.55 7.76 86.73 0.67 5.23 16 12 O -0.59 -11.29 15.95 -3.98 -0.06 -11.36 16 13 N -0.70 1.11 5.31 -443.09 -2.35 -1.24 16 14 C 0.11 -0.08 4.21 45.51 0.19 0.11 16 15 H 0.08 0.56 7.50 -2.39 -0.02 0.55 16 16 C -0.14 0.33 7.45 31.18 0.23 0.56 16 17 C -0.12 0.54 3.88 -10.21 -0.04 0.50 16 18 H 0.08 0.17 8.01 -2.39 -0.02 0.15 16 19 C 0.14 -1.13 6.39 86.38 0.55 -0.58 16 20 N -0.38 -0.06 3.69 -352.06 -1.30 -1.36 16 21 C 0.26 -0.15 12.63 180.36 2.28 2.13 16 22 N -0.59 -4.05 11.19 -204.00 -2.28 -6.33 16 23 C 0.19 1.23 13.03 180.77 2.36 3.59 16 24 N -0.35 -2.57 12.46 -61.25 -0.76 -3.33 16 25 C -0.11 0.95 7.39 31.12 0.23 1.18 16 26 C -0.02 -0.24 9.64 22.74 0.22 -0.02 16 27 C -0.13 -0.69 6.34 -20.21 -0.13 -0.82 16 28 H 0.38 -0.07 8.70 -74.06 -0.64 -0.72 16 29 H 0.10 0.48 7.96 -2.39 -0.02 0.46 16 30 H -0.26 0.84 7.00 99.48 0.70 1.53 16 31 H -0.31 -2.00 7.11 99.48 0.71 -1.29 16 32 H 0.21 -2.62 6.27 -2.91 -0.02 -2.63 16 33 H 0.44 -6.21 8.96 -92.71 -0.83 -7.05 16 34 H 0.16 -2.02 8.06 -2.92 -0.02 -2.05 16 35 H 0.17 -2.07 6.36 -2.91 -0.02 -2.09 16 36 H 0.42 -4.25 6.71 -92.71 -0.62 -4.87 16 37 H 0.04 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.11 -0.83 7.90 -2.38 -0.02 -0.85 16 39 H 0.14 -2.37 7.80 -2.39 -0.02 -2.39 16 40 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.26 -2.91 8.06 -2.91 -0.02 -2.93 16 42 H 0.23 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.13 -2.01 8.07 -2.39 -0.02 -2.03 16 44 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.10 1.57 7.64 -2.91 -0.02 1.55 16 Total: 0.00 -39.88 383.35 -0.55 -40.44 By element: Atomic # 1 Polarization: -24.91 SS G_CDS: -0.99 Total: -25.90 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 8.14 Total: 12.37 kcal Atomic # 7 Polarization: -1.57 SS G_CDS: -7.83 Total: -9.40 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.98 Total: -17.24 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.11 Total: -0.26 kcal Total: -39.88 -0.55 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.609 kcal (2) G-P(sol) polarization free energy of solvation -39.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds