Wall clock time and date at job start Sun Mar 7 2021 00:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47327 * 2 1 4 4 C 1.50698 * 109.46825 * 239.99731 * 2 1 3 5 5 C 1.38587 * 120.32900 * 300.02782 * 4 2 1 6 6 C 1.38633 * 118.48914 * 179.72726 * 5 4 2 7 7 C 1.39267 * 119.05970 * 0.50926 * 6 5 4 8 8 C 1.48165 * 119.72007 * 179.74785 * 7 6 5 9 9 O 1.21514 * 120.00280 * 359.73496 * 8 7 6 10 10 N 1.34781 * 120.00103 * 179.72445 * 8 7 6 11 11 C 1.46493 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.90705 * 336.25632 * 11 10 8 13 13 C 1.53781 * 113.61563 * 107.50461 * 11 10 8 14 14 C 1.54049 * 87.08031 * 139.97721 * 13 11 10 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 C 1.52990 * 113.70090 * 220.05426 * 14 13 11 17 17 N 1.46497 * 109.47171 * 272.42414 * 16 14 13 18 18 C 1.34428 * 126.82590 * 124.99486 * 17 16 14 19 19 N 1.30830 * 108.08300 * 179.97438 * 18 17 16 20 20 C 1.33252 * 109.82645 * 359.97438 * 19 18 17 21 21 N 1.30719 * 108.94280 * 359.75415 * 20 19 18 22 22 C 1.53781 * 113.61552 * 205.00255 * 11 10 8 23 23 N 1.32749 * 120.55675 * 359.47664 * 7 6 5 24 24 C 1.31494 * 121.64203 * 0.25270 * 23 7 6 25 25 H 0.96697 * 114.00066 * 59.99472 * 1 2 3 26 26 H 1.08995 * 109.46789 * 120.00590 * 2 1 3 27 27 H 1.48502 * 110.00158 * 60.00064 * 3 2 1 28 28 H 1.48501 * 110.00165 * 181.32165 * 3 2 1 29 29 H 1.07999 * 120.75016 * 359.96826 * 5 4 2 30 30 H 1.08001 * 120.46889 * 180.26558 * 6 5 4 31 31 H 0.97006 * 119.99341 * 0.02562 * 10 8 7 32 32 H 1.09005 * 113.61471 * 254.53304 * 13 11 10 33 33 H 1.08996 * 113.61178 * 25.34646 * 13 11 10 34 34 H 1.09007 * 109.47036 * 32.41747 * 16 14 13 35 35 H 1.08994 * 109.47734 * 152.42153 * 16 14 13 36 36 H 1.08005 * 125.95960 * 359.93180 * 18 17 16 37 37 H 1.07999 * 125.52611 * 179.97438 * 20 19 18 38 38 H 1.09002 * 113.61445 * 334.56837 * 22 11 10 39 39 H 1.09002 * 113.61408 * 105.38567 * 22 11 10 40 40 H 1.07994 * 119.55183 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6001 -2.0370 -1.4567 6 6 2.0782 -2.6515 -2.6038 7 6 2.8791 -1.9216 -3.4786 8 6 3.4026 -2.5655 -4.7061 9 8 3.1366 -3.7271 -4.9435 10 7 4.1736 -1.8627 -5.5594 11 6 4.6907 -2.4992 -6.7733 12 1 4.7508 -3.5843 -6.6907 13 6 4.0044 -2.0166 -8.0621 14 6 5.3972 -2.0427 -8.7199 15 1 5.6502 -3.0034 -9.1685 16 6 5.6573 -0.8612 -9.6564 17 7 5.1744 -1.1879 -11.0004 18 6 4.3020 -0.4789 -11.7375 19 7 4.1311 -1.1020 -12.8751 20 6 4.8748 -2.2074 -12.9011 21 7 5.5361 -2.3004 -11.7774 22 6 5.9777 -1.8498 -7.3089 23 7 3.1730 -0.6522 -3.2247 24 6 2.7285 -0.0433 -2.1473 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5139 0.8899 27 1 1.5616 2.4679 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 0.9805 -2.5785 -0.7573 30 1 1.8362 -3.6829 -2.8140 31 1 4.3860 -0.9354 -5.3697 32 1 3.3085 -2.7417 -8.4841 33 1 3.5770 -1.0172 -7.9812 34 1 5.1319 0.0189 -9.2855 35 1 6.7271 -0.6564 -9.6946 36 1 3.8248 0.4438 -11.4418 37 1 4.9258 -2.9103 -13.7195 38 1 6.0911 -0.8042 -7.0226 39 1 6.8750 -2.4397 -7.1215 40 1 2.9888 0.9903 -1.9739 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:30 Heat of formation + Delta-G solvation = 97.025363 kcal Electronic energy + Delta-G solvation = -24829.413341 eV Core-core repulsion = 21035.046180 eV Total energy + Delta-G solvation = -3794.367160 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96953 -41.96896 -40.93295 -39.45514 -38.00998 -35.55932 -34.34738 -33.51882 -33.01619 -32.10542 -29.32754 -27.87204 -26.94083 -25.18501 -24.88782 -23.61426 -22.94536 -22.46221 -21.72058 -20.85223 -19.20632 -18.73630 -18.44563 -17.86086 -17.19568 -16.80904 -16.70481 -16.51878 -16.30697 -16.19177 -15.97914 -15.79437 -15.23678 -15.10003 -14.75515 -14.47153 -14.42109 -14.31781 -13.84115 -13.70238 -13.62296 -13.29794 -12.79285 -12.70744 -12.48449 -12.21712 -12.04217 -11.67151 -11.37469 -11.15268 -10.90374 -10.76100 -10.73015 -10.69329 -10.55464 -10.36814 -10.09432 -5.23899 -0.64407 -0.01666 0.70451 1.03960 1.32223 1.42470 1.56265 1.79616 1.93605 2.08257 2.62277 2.85856 3.17532 3.19080 3.26733 3.32154 3.35847 3.42543 3.54449 3.60759 3.67883 3.76410 3.86445 3.93905 4.01653 4.06464 4.21494 4.24043 4.33840 4.43284 4.45803 4.56197 4.61814 4.78187 4.79734 4.84115 4.89165 5.08528 5.28022 5.30827 5.41139 5.51212 5.84187 6.24622 6.32418 6.54994 7.06559 7.16882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.068 4.068 3 Si 0.689 3.311 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.107 4.107 7 C 0.079 3.921 8 C 0.574 3.426 9 O -0.527 6.527 10 N -0.701 5.701 11 C 0.123 3.877 12 H 0.119 0.881 13 C -0.147 4.147 14 C -0.121 4.121 15 H 0.111 0.889 16 C 0.141 3.859 17 N -0.378 5.378 18 C 0.253 3.747 19 N -0.547 5.547 20 C 0.199 3.801 21 N -0.318 5.318 22 C -0.136 4.136 23 N -0.453 5.453 24 C 0.103 3.897 25 H 0.381 0.619 26 H 0.121 0.879 27 H -0.249 1.249 28 H -0.253 1.253 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 5.680 2.184 6.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.179 4.179 3 Si 0.590 3.410 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.059 4.059 8 C 0.359 3.641 9 O -0.403 6.403 10 N -0.351 5.351 11 C 0.018 3.982 12 H 0.137 0.863 13 C -0.186 4.186 14 C -0.140 4.140 15 H 0.129 0.871 16 C 0.019 3.981 17 N -0.169 5.169 18 C -0.044 4.044 19 N -0.274 5.274 20 C -0.104 4.104 21 N -0.145 5.145 22 C -0.174 4.174 23 N -0.164 5.164 24 C -0.057 4.057 25 H 0.229 0.771 26 H 0.138 0.862 27 H -0.173 1.173 28 H -0.177 1.177 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.233 0.767 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.435 5.094 2.346 5.789 hybrid contribution -0.403 -0.415 1.029 1.180 sum 1.032 4.679 3.375 5.860 Atomic orbital electron populations 1.86541 1.16570 1.81649 1.49358 1.25059 0.85622 1.10455 0.96751 0.94781 0.81101 0.77209 0.87943 1.21672 0.99080 0.96042 0.98413 1.21568 0.96406 0.93633 0.96262 1.22241 0.95202 1.02113 0.93244 1.21155 0.97969 0.90741 0.96020 1.17901 0.78511 0.85618 0.82112 1.90826 1.58231 1.16156 1.75039 1.45791 1.50856 1.16105 1.22385 1.22517 0.93862 0.99409 0.82390 0.86272 1.23632 0.96523 1.02684 0.95720 1.22745 0.97547 0.99798 0.93931 0.87133 1.21864 1.01440 0.98052 0.76736 1.50560 1.33454 1.17950 1.14892 1.26098 0.91855 0.98653 0.87767 1.70569 1.26833 1.08881 1.21128 1.26062 0.92474 0.95643 0.96246 1.78038 1.24496 1.06339 1.05671 1.23369 0.97842 1.02283 0.93943 1.67501 1.20339 1.09098 1.19488 1.22627 0.94111 0.99680 0.89259 0.77118 0.86171 1.17337 1.17729 0.83406 0.82965 0.75102 0.90660 0.89292 0.87823 0.88867 0.76613 0.76671 0.88853 0.89763 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.99 12.78 -35.23 -0.45 0.54 16 2 C -0.07 0.17 2.83 36.00 0.10 0.27 16 3 Si 0.69 -2.23 29.82 -169.99 -5.07 -7.30 16 4 C -0.15 0.26 5.40 -104.36 -0.56 -0.31 16 5 C -0.05 0.05 9.76 -39.31 -0.38 -0.33 16 6 C -0.11 -0.04 9.63 -39.05 -0.38 -0.41 16 7 C 0.08 0.08 6.75 -83.01 -0.56 -0.48 16 8 C 0.57 1.21 7.81 -12.18 -0.10 1.12 16 9 O -0.53 -2.80 15.92 5.35 0.09 -2.71 16 10 N -0.70 0.48 5.34 -53.86 -0.29 0.20 16 11 C 0.12 -0.16 4.24 -67.12 -0.28 -0.44 16 12 H 0.12 0.08 7.47 -51.93 -0.39 -0.31 16 13 C -0.15 0.28 7.44 -25.78 -0.19 0.09 16 14 C -0.12 0.32 3.89 -89.67 -0.35 -0.03 16 15 H 0.11 -0.06 8.01 -51.93 -0.42 -0.47 16 16 C 0.14 -0.47 6.39 -4.05 -0.03 -0.50 16 17 N -0.38 -0.02 3.69 -62.64 -0.23 -0.25 16 18 C 0.25 -0.02 12.63 -90.66 -1.14 -1.17 16 19 N -0.55 -1.59 11.19 -15.83 -0.18 -1.77 16 20 C 0.20 0.46 13.03 -91.80 -1.20 -0.74 16 21 N -0.32 -0.87 12.46 29.29 0.37 -0.51 16 22 C -0.14 0.49 7.39 -25.92 -0.19 0.30 16 23 N -0.45 0.03 9.54 -9.80 -0.09 -0.07 16 24 C 0.10 -0.17 9.84 -17.56 -0.17 -0.34 16 25 H 0.38 -2.15 8.70 45.56 0.40 -1.75 16 26 H 0.12 -0.26 7.96 -51.93 -0.41 -0.68 16 27 H -0.25 -0.07 7.11 56.52 0.40 0.34 16 28 H -0.25 0.27 7.11 56.52 0.40 0.68 16 29 H 0.15 -0.33 8.06 -52.49 -0.42 -0.75 16 30 H 0.15 0.02 7.64 -52.49 -0.40 -0.38 16 31 H 0.41 -0.99 8.06 -40.82 -0.33 -1.32 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 33 H 0.09 -0.27 7.91 -51.93 -0.41 -0.68 16 34 H 0.10 -0.63 7.80 -51.93 -0.40 -1.04 16 35 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 36 H 0.22 -0.98 8.06 -52.48 -0.42 -1.40 16 37 H 0.22 -0.16 8.06 -52.49 -0.42 -0.58 16 38 H 0.09 -0.49 8.08 -51.93 -0.42 -0.91 16 39 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 40 H 0.16 -0.66 4.89 -52.49 -0.26 -0.91 16 LS Contribution 347.11 15.07 5.23 5.23 Total: 0.00 -10.82 347.11 -10.84 -21.66 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -4.78 Total: -12.06 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -5.43 Total: -2.96 kcal Atomic # 7 Polarization: -1.98 SS G_CDS: -0.42 Total: -2.40 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: -0.36 Total: -2.17 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: -5.07 Total: -7.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -10.82 -10.84 -21.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.682 kcal (2) G-P(sol) polarization free energy of solvation -10.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds