Wall clock time and date at job start Sun Mar 7 2021 00:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47327 * 2 1 4 4 C 1.50698 * 109.46825 * 239.99731 * 2 1 3 5 5 C 1.38587 * 120.32900 * 300.02782 * 4 2 1 6 6 C 1.38633 * 118.48914 * 179.72726 * 5 4 2 7 7 C 1.39267 * 119.05970 * 0.50926 * 6 5 4 8 8 C 1.48165 * 119.72007 * 179.74785 * 7 6 5 9 9 O 1.21514 * 120.00280 * 359.73496 * 8 7 6 10 10 N 1.34781 * 120.00103 * 179.72445 * 8 7 6 11 11 C 1.46493 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.90705 * 336.25632 * 11 10 8 13 13 C 1.53781 * 113.61563 * 107.50461 * 11 10 8 14 14 C 1.54049 * 87.08031 * 139.97721 * 13 11 10 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 C 1.52990 * 113.70090 * 220.05426 * 14 13 11 17 17 N 1.46497 * 109.47171 * 272.42414 * 16 14 13 18 18 C 1.34428 * 126.82590 * 124.99486 * 17 16 14 19 19 N 1.30830 * 108.08300 * 179.97438 * 18 17 16 20 20 C 1.33252 * 109.82645 * 359.97438 * 19 18 17 21 21 N 1.30719 * 108.94280 * 359.75415 * 20 19 18 22 22 C 1.53781 * 113.61552 * 205.00255 * 11 10 8 23 23 N 1.32749 * 120.55675 * 359.47664 * 7 6 5 24 24 C 1.31494 * 121.64203 * 0.25270 * 23 7 6 25 25 H 0.96697 * 114.00066 * 59.99472 * 1 2 3 26 26 H 1.08995 * 109.46789 * 120.00590 * 2 1 3 27 27 H 1.48502 * 110.00158 * 60.00064 * 3 2 1 28 28 H 1.48501 * 110.00165 * 181.32165 * 3 2 1 29 29 H 1.07999 * 120.75016 * 359.96826 * 5 4 2 30 30 H 1.08001 * 120.46889 * 180.26558 * 6 5 4 31 31 H 0.97006 * 119.99341 * 0.02562 * 10 8 7 32 32 H 1.09005 * 113.61471 * 254.53304 * 13 11 10 33 33 H 1.08996 * 113.61178 * 25.34646 * 13 11 10 34 34 H 1.09007 * 109.47036 * 32.41747 * 16 14 13 35 35 H 1.08994 * 109.47734 * 152.42153 * 16 14 13 36 36 H 1.08005 * 125.95960 * 359.93180 * 18 17 16 37 37 H 1.07999 * 125.52611 * 179.97438 * 20 19 18 38 38 H 1.09002 * 113.61445 * 334.56837 * 22 11 10 39 39 H 1.09002 * 113.61408 * 105.38567 * 22 11 10 40 40 H 1.07994 * 119.55183 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6001 -2.0370 -1.4567 6 6 2.0782 -2.6515 -2.6038 7 6 2.8791 -1.9216 -3.4786 8 6 3.4026 -2.5655 -4.7061 9 8 3.1366 -3.7271 -4.9435 10 7 4.1736 -1.8627 -5.5594 11 6 4.6907 -2.4992 -6.7733 12 1 4.7508 -3.5843 -6.6907 13 6 4.0044 -2.0166 -8.0621 14 6 5.3972 -2.0427 -8.7199 15 1 5.6502 -3.0034 -9.1685 16 6 5.6573 -0.8612 -9.6564 17 7 5.1744 -1.1879 -11.0004 18 6 4.3020 -0.4789 -11.7375 19 7 4.1311 -1.1020 -12.8751 20 6 4.8748 -2.2074 -12.9011 21 7 5.5361 -2.3004 -11.7774 22 6 5.9777 -1.8498 -7.3089 23 7 3.1730 -0.6522 -3.2247 24 6 2.7285 -0.0433 -2.1473 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5139 0.8899 27 1 1.5616 2.4679 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 0.9805 -2.5785 -0.7573 30 1 1.8362 -3.6829 -2.8140 31 1 4.3860 -0.9354 -5.3697 32 1 3.3085 -2.7417 -8.4841 33 1 3.5770 -1.0172 -7.9812 34 1 5.1319 0.0189 -9.2855 35 1 6.7271 -0.6564 -9.6946 36 1 3.8248 0.4438 -11.4418 37 1 4.9258 -2.9103 -13.7195 38 1 6.0911 -0.8042 -7.0226 39 1 6.8750 -2.4397 -7.1215 40 1 2.9888 0.9903 -1.9739 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:29 Heat of formation + Delta-G solvation = 95.569650 kcal Electronic energy + Delta-G solvation = -24829.476465 eV Core-core repulsion = 21035.046180 eV Total energy + Delta-G solvation = -3794.430285 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96755 -41.94972 -40.86379 -39.46944 -37.86388 -35.54613 -34.31307 -33.47321 -32.95168 -32.14768 -29.22946 -27.77493 -26.75745 -25.10054 -24.81588 -23.56078 -22.91956 -22.41845 -21.75031 -20.71714 -19.16872 -18.63174 -18.35879 -17.78140 -17.11752 -16.72377 -16.65918 -16.41207 -16.24554 -16.18525 -15.92772 -15.74102 -15.22271 -15.03902 -14.68287 -14.38095 -14.33942 -14.25992 -13.69214 -13.54410 -13.47407 -13.22464 -12.72514 -12.55187 -12.41709 -12.15843 -11.89877 -11.55587 -11.44501 -11.08084 -10.96400 -10.78383 -10.70835 -10.60563 -10.50342 -10.32767 -10.05871 -4.99449 -0.62059 0.06076 0.72057 1.25488 1.46072 1.50808 1.64678 1.94021 1.99346 2.02902 2.64169 2.92448 3.36010 3.42300 3.46068 3.48140 3.50618 3.55633 3.66097 3.74900 3.79028 3.89424 3.94185 4.10556 4.15884 4.18576 4.38695 4.40964 4.52239 4.56306 4.68529 4.70967 4.77387 4.88020 4.91933 4.97660 5.00901 5.16650 5.32640 5.36181 5.47119 5.49719 5.97269 6.25871 6.59794 6.71824 7.03108 7.14940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.072 4.072 3 Si 0.779 3.221 4 C -0.142 4.142 5 C -0.054 4.054 6 C -0.118 4.118 7 C 0.064 3.936 8 C 0.568 3.432 9 O -0.572 6.572 10 N -0.684 5.684 11 C 0.112 3.888 12 H 0.091 0.909 13 C -0.140 4.140 14 C -0.114 4.114 15 H 0.082 0.918 16 C 0.136 3.864 17 N -0.378 5.378 18 C 0.257 3.743 19 N -0.586 5.586 20 C 0.186 3.814 21 N -0.351 5.351 22 C -0.116 4.116 23 N -0.455 5.455 24 C 0.103 3.897 25 H 0.398 0.602 26 H 0.118 0.882 27 H -0.298 1.298 28 H -0.275 1.275 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.423 0.577 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.259 0.741 37 H 0.231 0.769 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 8.250 2.831 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.182 4.182 3 Si 0.684 3.316 4 C -0.144 4.144 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.073 4.073 8 C 0.353 3.647 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.007 3.993 12 H 0.109 0.891 13 C -0.179 4.179 14 C -0.134 4.134 15 H 0.101 0.899 16 C 0.016 3.984 17 N -0.168 5.168 18 C -0.039 4.039 19 N -0.314 5.314 20 C -0.117 4.117 21 N -0.180 5.180 22 C -0.155 4.155 23 N -0.166 5.166 24 C -0.057 4.057 25 H 0.248 0.752 26 H 0.135 0.865 27 H -0.226 1.226 28 H -0.202 1.202 29 H 0.176 0.824 30 H 0.163 0.837 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.275 0.725 37 H 0.247 0.753 38 H 0.141 0.859 39 H 0.101 0.899 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.649 7.677 2.971 8.396 hybrid contribution -0.502 -1.176 0.936 1.585 sum 1.147 6.502 3.907 7.672 Atomic orbital electron populations 1.86511 1.16729 1.82121 1.50607 1.25211 0.85616 1.11193 0.96190 0.93754 0.78124 0.74264 0.85505 1.21784 0.98478 0.95661 0.98504 1.21711 0.96318 0.94122 0.95849 1.22274 0.95691 1.02033 0.93912 1.21047 0.98877 0.91448 0.95962 1.18177 0.78505 0.85261 0.82727 1.90797 1.60086 1.18016 1.76151 1.45731 1.49587 1.16350 1.21833 1.22547 0.95914 0.98321 0.82506 0.89086 1.23611 0.96386 1.02938 0.94926 1.22556 0.97042 0.99165 0.94593 0.89931 1.22208 1.02605 0.98667 0.74944 1.50743 1.33271 1.17154 1.15637 1.26889 0.90953 0.99211 0.86831 1.70547 1.28074 1.09672 1.23093 1.26443 0.92474 0.96075 0.96715 1.77956 1.25567 1.08155 1.06292 1.23315 0.96218 1.03638 0.92293 1.67501 1.20517 1.08425 1.20144 1.23053 0.93442 1.00640 0.88571 0.75213 0.86476 1.22610 1.20191 0.82431 0.83712 0.73790 0.93358 0.87141 0.83918 0.88015 0.72508 0.75321 0.85893 0.89873 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.63 12.78 -148.98 -1.90 0.73 16 2 C -0.07 0.43 2.83 71.24 0.20 0.63 16 3 Si 0.78 -6.00 29.82 68.60 2.05 -3.95 16 4 C -0.14 0.63 5.40 -19.69 -0.11 0.52 16 5 C -0.05 0.11 9.76 22.45 0.22 0.33 16 6 C -0.12 -0.21 9.63 22.61 0.22 0.01 16 7 C 0.06 0.18 6.75 41.89 0.28 0.46 16 8 C 0.57 3.19 7.81 86.88 0.68 3.87 16 9 O -0.57 -7.64 15.92 -3.76 -0.06 -7.70 16 10 N -0.68 0.81 5.34 -442.61 -2.37 -1.56 16 11 C 0.11 -0.20 4.24 45.52 0.19 -0.01 16 12 H 0.09 0.38 7.47 -2.39 -0.02 0.36 16 13 C -0.14 0.51 7.44 31.21 0.23 0.75 16 14 C -0.11 0.61 3.89 -10.18 -0.04 0.57 16 15 H 0.08 0.06 8.01 -2.39 -0.02 0.05 16 16 C 0.14 -1.14 6.39 86.38 0.55 -0.59 16 17 N -0.38 0.16 3.69 -352.08 -1.30 -1.14 16 18 C 0.26 -0.30 12.63 180.36 2.28 1.97 16 19 N -0.59 -3.61 11.19 -203.99 -2.28 -5.89 16 20 C 0.19 1.08 13.03 180.76 2.36 3.44 16 21 N -0.35 -2.29 12.46 -61.24 -0.76 -3.05 16 22 C -0.12 0.95 7.39 31.12 0.23 1.18 16 23 N -0.45 0.41 9.54 -184.91 -1.76 -1.35 16 24 C 0.10 -0.48 9.84 84.83 0.83 0.35 16 25 H 0.40 -5.05 8.70 -74.06 -0.64 -5.69 16 26 H 0.12 -0.61 7.96 -2.39 -0.02 -0.63 16 27 H -0.30 -0.22 7.11 99.48 0.71 0.48 16 28 H -0.28 1.02 7.11 99.48 0.71 1.73 16 29 H 0.16 -0.71 8.06 -2.91 -0.02 -0.74 16 30 H 0.15 0.38 7.64 -2.91 -0.02 0.36 16 31 H 0.42 -2.52 8.06 -92.70 -0.75 -3.26 16 32 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.11 -0.88 7.91 -2.39 -0.02 -0.90 16 34 H 0.14 -2.30 7.80 -2.38 -0.02 -2.32 16 35 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H 0.26 -3.03 8.06 -2.91 -0.02 -3.06 16 37 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.12 -1.68 8.08 -2.39 -0.02 -1.70 16 39 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.19 -1.98 4.89 -2.91 -0.01 -1.99 16 Total: 0.00 -28.69 347.11 -0.52 -29.21 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -0.25 Total: -18.79 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 8.13 Total: 13.49 kcal Atomic # 7 Polarization: -4.52 SS G_CDS: -8.47 Total: -12.99 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -1.96 Total: -6.97 kcal Atomic # 14 Polarization: -6.00 SS G_CDS: 2.05 Total: -3.95 kcal Total: -28.69 -0.52 -29.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.780 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds