Wall clock time and date at job start Sun Mar 7 2021 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34652 * 124.84639 * 2 1 4 4 C 1.36774 * 108.39513 * 180.18995 * 3 2 1 5 5 C 1.47265 * 126.94058 * 179.83345 * 4 3 2 6 6 O 1.21632 * 119.99503 * 179.68613 * 5 4 3 7 7 N 1.34774 * 120.00547 * 359.68758 * 5 4 3 8 8 C 1.46492 * 120.00245 * 179.97438 * 7 5 4 9 9 H 1.09008 * 112.84845 * 336.19587 * 8 7 5 10 10 C 1.53775 * 113.69101 * 107.46785 * 8 7 5 11 11 C 1.53779 * 87.08438 * 139.99340 * 10 8 7 12 12 H 1.09002 * 113.61731 * 89.11293 * 11 10 8 13 13 C 1.53000 * 113.69071 * 220.00724 * 11 10 8 14 14 N 1.46499 * 109.46974 * 274.06244 * 13 11 10 15 15 C 1.34437 * 126.82151 * 124.71157 * 14 13 11 16 16 N 1.30830 * 108.07680 * 179.88933 * 15 14 13 17 17 C 1.33248 * 109.82751 * 0.38371 * 16 15 14 18 18 N 1.30714 * 108.94618 * 359.76014 * 17 16 15 19 19 C 1.53777 * 113.61596 * 205.00267 * 8 7 5 20 20 C 1.46687 * 106.11184 * 359.57444 * 4 3 2 21 21 C 1.34481 * 106.33490 * 0.25970 * 20 4 3 22 22 C 1.50698 * 125.57118 * 180.02562 * 21 20 4 23 23 O 1.42904 * 109.47166 * 209.97625 * 22 21 20 24 24 Si 1.86299 * 109.47333 * 329.97704 * 22 21 20 25 25 H 1.09003 * 109.47419 * 270.28962 * 1 2 3 26 26 H 1.08998 * 109.47401 * 30.29308 * 1 2 3 27 27 H 1.08999 * 109.46713 * 150.29353 * 1 2 3 28 28 H 1.08002 * 125.80659 * 0.04986 * 3 2 1 29 29 H 0.97005 * 119.99589 * 0.02562 * 7 5 4 30 30 H 1.08993 * 113.61636 * 25.43703 * 10 8 7 31 31 H 1.09008 * 113.61006 * 254.53946 * 10 8 7 32 32 H 1.09001 * 109.47043 * 34.05895 * 13 11 10 33 33 H 1.08992 * 109.47277 * 154.06065 * 13 11 10 34 34 H 1.08003 * 125.96096 * 0.03840 * 15 14 13 35 35 H 1.08000 * 125.52593 * 179.79846 * 17 16 15 36 36 H 1.08997 * 113.61941 * 105.38208 * 19 8 7 37 37 H 1.09005 * 113.61136 * 334.48373 * 19 8 7 38 38 H 1.08000 * 126.82996 * 180.22762 * 20 4 3 39 39 H 1.09008 * 109.46802 * 89.98062 * 22 21 20 40 40 H 0.96693 * 114.00069 * 60.00195 * 23 22 21 41 41 H 1.48500 * 109.99751 * 180.02562 * 24 22 21 42 42 H 1.48497 * 109.99875 * 301.32048 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5462 0.7177 -0.0043 5 6 4.7283 1.5959 -0.0093 6 8 5.8446 1.1130 -0.0070 7 7 4.5733 2.9347 -0.0163 8 6 5.7493 3.8082 -0.0207 9 1 6.6371 3.3250 0.3874 10 6 5.9934 4.5090 -1.3675 11 6 6.3687 5.7617 -0.5584 12 1 7.4257 5.8126 -0.2974 13 6 5.8429 7.0648 -1.1638 14 7 6.7934 7.5570 -2.1640 15 6 6.5313 7.8475 -3.4502 16 7 7.6411 8.2582 -4.0079 17 6 8.6306 8.2358 -3.1157 18 7 8.1607 7.8134 -1.9714 19 6 5.4823 5.2038 0.5675 20 6 3.5375 -0.7491 0.0034 21 6 2.2448 -1.1197 0.0057 22 6 1.7399 -2.5396 0.0139 23 8 0.4806 -2.6012 -0.6587 24 14 2.9645 -3.6392 -0.8589 25 1 -0.3634 0.0052 1.0277 26 1 -0.3634 0.8873 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 1.8766 2.1241 0.0008 29 1 3.6830 3.3198 -0.0177 30 1 5.0910 4.6301 -1.9666 31 1 6.8253 4.0894 -1.9335 32 1 4.8786 6.8820 -1.6379 33 1 5.7254 7.8096 -0.3767 34 1 5.5713 7.7596 -3.9374 35 1 9.6545 8.5210 -3.3069 36 1 5.9012 5.3452 1.5638 37 1 4.4399 5.5149 0.4975 38 1 4.3981 -1.4016 0.0061 39 1 1.6187 -2.8761 1.0436 40 1 0.5133 -2.3154 -1.5819 41 1 2.4778 -5.0422 -0.8582 42 1 3.1626 -3.1715 -2.2543 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:31 Heat of formation + Delta-G solvation = 109.696803 kcal Electronic energy + Delta-G solvation = -25624.873879 eV Core-core repulsion = 21803.744715 eV Total energy + Delta-G solvation = -3821.129164 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96937 -42.45556 -40.93772 -39.27179 -37.94971 -35.40253 -34.09668 -33.59532 -32.15273 -31.38707 -29.07975 -27.52523 -26.71715 -26.36994 -24.73623 -23.37353 -22.92048 -22.12630 -21.24565 -20.73073 -20.25407 -18.98146 -18.34633 -17.50334 -17.28101 -16.90604 -16.79283 -16.51635 -16.24541 -15.89015 -15.74607 -15.58480 -15.37038 -15.08565 -14.95030 -14.56225 -14.38335 -14.11857 -13.65749 -13.49680 -13.43673 -13.21793 -13.15863 -13.02301 -12.68683 -12.38354 -12.30230 -11.98283 -11.84745 -11.50115 -11.01913 -10.94295 -10.90071 -10.77837 -10.49526 -10.05906 -9.54803 -9.20016 -4.90417 0.71953 0.75111 1.02587 1.44400 1.47698 1.61748 1.80300 2.02421 2.06694 2.31866 2.55792 3.15542 3.41446 3.49239 3.51311 3.55312 3.57891 3.81452 3.89651 3.92513 3.97892 4.15721 4.18518 4.31678 4.42866 4.46422 4.47883 4.51705 4.53754 4.71389 4.75776 4.81575 4.85054 4.96171 4.97043 5.00529 5.05825 5.28577 5.32914 5.46974 5.59716 5.67972 5.96911 5.97656 6.24623 6.31905 6.68585 7.14676 7.37792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.426 5.426 3 C 0.074 3.926 4 C -0.263 4.263 5 C 0.586 3.414 6 O -0.598 6.598 7 N -0.702 5.702 8 C 0.118 3.882 9 H 0.082 0.918 10 C -0.142 4.142 11 C -0.116 4.116 12 H 0.078 0.922 13 C 0.136 3.864 14 N -0.377 5.377 15 C 0.257 3.743 16 N -0.586 5.586 17 C 0.185 3.815 18 N -0.351 5.351 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.024 4.024 22 C -0.042 4.042 23 O -0.538 6.538 24 Si 0.769 3.231 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.212 0.788 29 H 0.416 0.584 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.259 0.741 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.132 0.868 40 H 0.388 0.612 41 H -0.288 1.288 42 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 2.839 1.814 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.100 5.100 3 C -0.063 4.063 4 C -0.273 4.273 5 C 0.377 3.623 6 O -0.480 6.480 7 N -0.353 5.353 8 C 0.012 3.988 9 H 0.100 0.900 10 C -0.180 4.180 11 C -0.136 4.136 12 H 0.097 0.903 13 C 0.016 3.984 14 N -0.168 5.168 15 C -0.039 4.039 16 N -0.314 5.314 17 C -0.118 4.118 18 N -0.180 5.180 19 C -0.152 4.152 20 C -0.182 4.182 21 C -0.133 4.133 22 C -0.152 4.152 23 O -0.346 6.346 24 Si 0.673 3.327 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.228 0.772 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.275 0.725 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.150 0.850 40 H 0.238 0.762 41 H -0.215 1.215 42 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -9.568 1.703 2.121 9.947 hybrid contribution -0.678 0.394 -0.748 1.084 sum -10.246 2.097 1.373 10.548 Atomic orbital electron populations 1.22739 0.74598 1.07082 1.04946 1.43732 1.08044 1.04618 1.53633 1.22450 0.88887 0.93305 1.01696 1.20320 0.92276 0.93856 1.20819 1.17772 0.87724 0.82519 0.74305 1.90760 1.27980 1.76300 1.52969 1.45589 1.10117 1.04558 1.75062 1.22350 0.89379 0.89625 0.97398 0.89958 1.23565 1.02045 0.95506 0.96916 1.22522 1.00507 0.92813 0.97728 0.90309 1.22223 0.90122 0.95371 0.90676 1.50755 1.06950 1.48311 1.10768 1.26884 1.00701 0.93711 0.82648 1.70538 0.99927 1.26164 1.34810 1.26435 1.01329 0.97746 0.86241 1.77954 0.91116 1.24303 1.24589 1.23305 1.02070 0.91743 0.98095 1.21818 0.95556 0.93779 1.07013 1.20768 0.90430 0.89820 1.12312 1.24691 0.92342 0.94126 1.03992 1.86537 1.29524 1.88818 1.29752 0.93321 0.84672 0.74687 0.79980 0.90281 0.87495 0.87272 0.77179 0.74603 0.87111 0.94087 0.83829 0.88010 0.72497 0.75352 0.90081 0.85540 0.83105 0.85004 0.76217 1.21526 1.22112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.45 10.71 127.77 1.37 0.92 16 2 N -0.43 1.74 3.09 -533.24 -1.65 0.10 16 3 C 0.07 -0.37 10.83 83.92 0.91 0.54 16 4 C -0.26 -0.75 6.29 -19.04 -0.12 -0.87 16 5 C 0.59 3.83 7.81 86.62 0.68 4.51 16 6 O -0.60 -10.21 16.57 -4.13 -0.07 -10.28 16 7 N -0.70 1.93 5.35 -443.47 -2.37 -0.45 16 8 C 0.12 -0.19 4.24 45.52 0.19 0.01 16 9 H 0.08 0.50 7.46 -2.38 -0.02 0.48 16 10 C -0.14 0.45 7.43 31.12 0.23 0.68 16 11 C -0.12 0.60 3.87 -10.27 -0.04 0.56 16 12 H 0.08 0.12 8.03 -2.39 -0.02 0.10 16 13 C 0.14 -1.18 6.38 86.38 0.55 -0.63 16 14 N -0.38 0.10 3.69 -352.06 -1.30 -1.20 16 15 C 0.26 -0.27 12.63 180.36 2.28 2.01 16 16 N -0.59 -3.78 11.19 -203.99 -2.28 -6.07 16 17 C 0.19 1.15 13.03 180.76 2.36 3.51 16 18 N -0.35 -2.42 12.47 -61.24 -0.76 -3.19 16 19 C -0.11 1.01 7.39 31.12 0.23 1.24 16 20 C -0.16 -0.60 9.49 23.62 0.22 -0.38 16 21 C -0.02 0.01 6.14 40.98 0.25 0.26 16 22 C -0.04 0.11 2.98 71.24 0.21 0.32 16 23 O -0.54 1.71 9.95 -148.98 -1.48 0.23 16 24 Si 0.77 -0.76 31.12 68.60 2.13 1.38 16 25 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.11 -1.55 8.13 -2.39 -0.02 -1.57 16 27 H 0.11 -0.99 4.93 -2.39 -0.01 -1.00 16 28 H 0.21 -3.08 7.45 -2.91 -0.02 -3.10 16 29 H 0.42 -4.66 7.67 -92.70 -0.71 -5.37 16 30 H 0.11 -0.91 7.92 -2.39 -0.02 -0.92 16 31 H 0.04 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.14 -2.42 7.82 -2.39 -0.02 -2.44 16 33 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.26 -3.03 8.06 -2.91 -0.02 -3.06 16 35 H 0.23 0.15 8.06 -2.91 -0.02 0.13 16 36 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.13 -1.99 8.08 -2.38 -0.02 -2.01 16 38 H 0.15 0.55 6.89 -2.91 -0.02 0.53 16 39 H 0.13 -0.58 7.96 -2.38 -0.02 -0.59 16 40 H 0.39 -3.09 8.38 -74.06 -0.62 -3.71 16 41 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 42 H -0.29 -1.55 7.11 99.48 0.71 -0.85 16 Total: 0.00 -34.47 356.28 1.31 -33.16 By element: Atomic # 1 Polarization: -26.14 SS G_CDS: -0.23 Total: -26.37 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 9.32 Total: 12.68 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -8.36 Total: -10.80 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.55 Total: -10.05 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.13 Total: 1.38 kcal Total: -34.47 1.31 -33.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.857 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds