Wall clock time and date at job start Sun Mar 7 2021 00:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38975 * 119.95693 * 2 1 4 4 O 1.35711 * 119.91227 * 0.02562 * 3 2 1 5 5 C 1.39011 * 120.17485 * 180.02562 * 3 2 1 6 6 C 1.50707 * 119.95512 * 179.97438 * 5 3 2 7 7 O 1.42896 * 109.47028 * 75.02272 * 6 5 3 8 8 Si 1.86303 * 109.46988 * 195.02278 * 6 5 3 9 9 C 1.37679 * 120.09115 * 359.97438 * 5 3 2 10 10 C 1.39754 * 119.90998 * 359.97438 * 9 5 3 11 11 C 1.47611 * 120.08705 * 180.02562 * 10 9 5 12 12 O 1.21582 * 120.00110 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99701 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99725 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85535 * 336.19829 * 14 13 11 16 16 C 1.53958 * 113.66742 * 107.44286 * 14 13 11 17 17 C 1.53781 * 87.02081 * 139.93141 * 16 14 13 18 18 H 1.08997 * 113.61020 * 89.23023 * 17 16 14 19 19 C 1.52995 * 113.61367 * 220.04892 * 17 16 14 20 20 N 1.46506 * 109.47276 * 274.13740 * 19 17 16 21 21 C 1.34429 * 126.82484 * 124.70840 * 20 19 17 22 22 N 1.30833 * 108.07882 * 179.89823 * 21 20 19 23 23 C 1.33246 * 109.82631 * 0.37653 * 22 21 20 24 24 N 1.30718 * 108.94642 * 359.76804 * 23 22 21 25 25 C 1.53777 * 87.17042 * 334.63924 * 17 16 14 26 26 C 1.37725 * 119.95279 * 180.25219 * 2 1 3 27 27 H 1.08996 * 109.47241 * 90.00029 * 1 2 3 28 28 H 1.09001 * 109.47460 * 209.99970 * 1 2 3 29 29 H 1.09001 * 109.46947 * 330.00118 * 1 2 3 30 30 H 0.96702 * 113.99843 * 270.02241 * 4 3 2 31 31 H 1.08995 * 109.46933 * 315.02167 * 6 5 3 32 32 H 0.96701 * 114.00089 * 60.00274 * 7 6 5 33 33 H 1.48503 * 109.99750 * 58.68111 * 8 6 5 34 34 H 1.48502 * 109.99554 * 179.97438 * 8 6 5 35 35 H 1.08000 * 120.04971 * 180.02562 * 9 5 3 36 36 H 0.97000 * 120.00434 * 359.97438 * 13 11 10 37 37 H 1.09005 * 113.60943 * 25.41083 * 16 14 13 38 38 H 1.09000 * 113.66441 * 254.46530 * 16 14 13 39 39 H 1.08997 * 109.47344 * 154.13512 * 19 17 16 40 40 H 1.08998 * 109.47310 * 34.13538 * 19 17 16 41 41 H 1.08005 * 125.95756 * 0.03916 * 21 20 19 42 42 H 1.07997 * 125.52166 * 179.79718 * 23 22 21 43 43 H 1.09010 * 113.60995 * 139.94280 * 25 17 16 44 44 H 1.09003 * 113.61735 * 270.83417 * 25 17 16 45 45 H 1.08000 * 120.04633 * 0.02835 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5180 -0.0011 7 8 4.2731 3.1045 1.3003 8 14 6.1195 2.2156 -0.4570 9 6 4.2859 0.0208 -0.0005 10 6 3.5918 -1.1922 0.0005 11 6 4.3328 -2.4689 0.0011 12 8 5.5486 -2.4661 0.0011 13 7 3.6615 -3.6376 0.0016 14 6 4.3969 -4.9046 0.0028 15 1 5.4044 -4.8097 -0.4022 16 6 4.3411 -5.6504 1.3485 17 6 4.1913 -6.9456 0.5331 18 1 5.1423 -7.4105 0.2736 19 6 3.1902 -7.9350 1.1328 20 7 3.8647 -8.7665 2.1328 21 6 3.5052 -8.9327 3.4174 22 7 4.3598 -9.7513 3.9754 23 6 5.2795 -10.1206 3.0849 24 7 5.0189 -9.5434 1.9414 25 6 3.6020 -6.0788 -0.5922 26 6 2.1946 -1.1933 -0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.3217 2.7180 -0.8828 31 1 3.8873 3.1938 -0.7275 32 1 4.6573 2.5568 1.9984 33 1 6.1997 1.5765 -1.7951 34 1 6.8674 3.4985 -0.4617 35 1 5.3659 0.0257 -0.0005 36 1 2.6915 -3.6398 0.0020 37 1 3.4628 -5.4068 1.9465 38 1 5.2695 -5.5972 1.9170 39 1 2.7893 -8.5701 0.3428 40 1 2.3760 -7.3862 1.6060 41 1 2.6575 -8.4727 3.9034 42 1 6.1059 -10.7889 3.2766 43 1 3.9346 -6.3712 -1.5883 44 1 2.5213 -5.9527 -0.5259 45 1 1.6546 -2.1286 -0.0098 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:34 Heat of formation + Delta-G solvation = 36.101311 kcal Electronic energy + Delta-G solvation = -29247.827082 eV Core-core repulsion = 25042.024157 eV Total energy + Delta-G solvation = -4205.802926 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.96136 -41.78672 -40.86061 -39.52334 -37.86143 -37.47967 -35.51970 -34.18918 -33.89918 -32.14438 -31.72716 -29.01110 -27.97995 -26.92411 -26.73187 -25.46752 -23.84452 -22.91516 -22.38509 -21.96533 -21.57258 -20.49185 -19.56908 -18.73929 -18.35150 -18.09596 -17.46283 -16.93440 -16.74922 -16.48842 -16.22973 -16.11162 -15.96467 -15.75221 -15.56815 -15.19659 -15.01628 -14.72018 -14.50167 -14.28194 -14.20306 -13.89599 -13.66021 -13.45067 -13.31682 -13.18957 -12.91451 -12.81014 -12.66967 -12.39549 -12.31477 -12.22544 -11.85787 -11.61400 -11.52157 -11.10287 -10.94739 -10.77158 -10.49856 -10.47758 -10.16789 -9.95922 -9.64478 -5.07070 -0.39879 0.07699 0.72704 1.19408 1.48019 1.51674 1.62000 1.82936 2.03036 2.05518 2.56437 3.11360 3.36356 3.39650 3.47377 3.50025 3.56246 3.57039 3.59765 3.74464 3.79392 3.91705 4.03537 4.16279 4.17087 4.19763 4.32888 4.39108 4.47227 4.53714 4.62459 4.70735 4.72418 4.77347 4.81158 4.82221 4.95666 5.04092 5.04595 5.08335 5.20287 5.22356 5.33318 5.33615 5.47532 5.53228 5.61053 5.98481 6.46304 6.68074 6.71021 7.13327 7.15671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C 0.153 3.847 4 O -0.497 6.497 5 C -0.160 4.160 6 C -0.051 4.051 7 O -0.548 6.548 8 Si 0.740 3.260 9 C -0.058 4.058 10 C -0.151 4.151 11 C 0.558 3.442 12 O -0.578 6.578 13 N -0.697 5.697 14 C 0.116 3.884 15 H 0.088 0.912 16 C -0.141 4.141 17 C -0.117 4.117 18 H 0.079 0.921 19 C 0.136 3.864 20 N -0.377 5.377 21 C 0.257 3.743 22 N -0.586 5.586 23 C 0.185 3.815 24 N -0.351 5.351 25 C -0.115 4.115 26 C -0.052 4.052 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.409 0.591 31 H 0.113 0.887 32 H 0.392 0.608 33 H -0.290 1.290 34 H -0.288 1.288 35 H 0.139 0.861 36 H 0.418 0.582 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.260 0.740 42 H 0.230 0.770 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -1.530 -1.623 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C 0.107 3.893 4 O -0.310 6.310 5 C -0.161 4.161 6 C -0.162 4.162 7 O -0.355 6.355 8 Si 0.646 3.354 9 C -0.077 4.077 10 C -0.154 4.154 11 C 0.347 3.653 12 O -0.459 6.459 13 N -0.349 5.349 14 C 0.011 3.989 15 H 0.106 0.894 16 C -0.180 4.180 17 C -0.136 4.136 18 H 0.098 0.902 19 C 0.015 3.985 20 N -0.168 5.168 21 C -0.039 4.039 22 N -0.315 5.315 23 C -0.117 4.117 24 N -0.180 5.180 25 C -0.154 4.154 26 C -0.070 4.070 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.270 0.730 31 H 0.130 0.870 32 H 0.241 0.759 33 H -0.217 1.217 34 H -0.215 1.215 35 H 0.156 0.844 36 H 0.257 0.743 37 H 0.130 0.870 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.162 0.838 41 H 0.275 0.725 42 H 0.246 0.754 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.890 -1.105 -2.312 8.295 hybrid contribution -0.335 0.433 -0.720 0.904 sum -8.224 -0.672 -3.032 8.791 Atomic orbital electron populations 1.20768 0.88207 1.04220 1.03631 1.20461 0.98367 0.91726 1.01598 1.18505 0.88743 0.85990 0.96039 1.84740 1.75495 1.35825 1.34932 1.20620 0.94323 0.95634 1.05518 1.24795 1.08918 0.93073 0.89394 1.86508 1.84807 1.47653 1.16574 0.93808 0.76393 0.80795 0.84362 1.21002 0.99957 0.90815 0.95884 1.19826 0.94430 0.92583 1.08532 1.18421 0.86808 0.84720 0.75351 1.90798 1.15379 1.88125 1.51580 1.45715 1.10907 1.04314 1.73938 1.22482 0.97138 0.81591 0.97667 0.89389 1.23601 1.02931 0.94699 0.96745 1.22524 0.99627 0.93779 0.97714 0.90232 1.22231 0.94137 0.91409 0.90704 1.50752 1.20226 1.34950 1.10846 1.26886 0.99606 0.94750 0.82659 1.70542 1.07539 1.18554 1.34819 1.26425 0.99494 0.99540 0.86278 1.77955 1.02946 1.12516 1.24545 1.23321 1.02086 0.91802 0.98177 1.21390 0.91530 0.99090 0.95034 0.89717 0.89272 0.91444 0.73044 0.86973 0.75865 1.21708 1.21544 0.84411 0.74267 0.86965 0.93669 0.88118 0.83788 0.72490 0.75412 0.90005 0.85509 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.93 9.78 71.24 0.70 1.63 16 2 C -0.12 0.52 5.89 -19.81 -0.12 0.41 16 3 C 0.15 -0.08 6.66 22.63 0.15 0.07 16 4 O -0.50 0.50 11.84 -90.32 -1.07 -0.57 16 5 C -0.16 -0.13 5.27 -19.81 -0.10 -0.24 16 6 C -0.05 -0.06 2.37 71.24 0.17 0.11 16 7 O -0.55 -1.56 12.88 -148.98 -1.92 -3.48 16 8 Si 0.74 1.49 29.91 68.60 2.05 3.54 16 9 C -0.06 -0.10 8.20 22.50 0.18 0.09 16 10 C -0.15 0.08 5.88 -20.08 -0.12 -0.04 16 11 C 0.56 1.20 7.76 86.72 0.67 1.87 16 12 O -0.58 -6.58 15.94 -3.97 -0.06 -6.64 16 13 N -0.70 4.14 5.31 -442.85 -2.35 1.79 16 14 C 0.12 -0.53 4.24 45.58 0.19 -0.34 16 15 H 0.09 0.20 7.46 -2.39 -0.02 0.19 16 16 C -0.14 0.82 7.45 31.18 0.23 1.05 16 17 C -0.12 0.83 3.86 -10.27 -0.04 0.79 16 18 H 0.08 -0.03 8.03 -2.39 -0.02 -0.05 16 19 C 0.14 -1.36 6.37 86.38 0.55 -0.81 16 20 N -0.38 0.56 3.69 -352.06 -1.30 -0.74 16 21 C 0.26 -0.54 12.63 180.36 2.28 1.74 16 22 N -0.59 -3.24 11.19 -203.99 -2.28 -5.52 16 23 C 0.19 0.98 13.03 180.76 2.36 3.33 16 24 N -0.35 -2.03 12.47 -61.24 -0.76 -2.79 16 25 C -0.12 1.27 7.39 31.12 0.23 1.50 16 26 C -0.05 0.33 9.18 22.50 0.21 0.54 16 27 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 28 H 0.09 -1.04 8.08 -2.39 -0.02 -1.06 16 29 H 0.07 -0.37 7.52 -2.39 -0.02 -0.38 16 30 H 0.41 -3.84 9.06 -74.06 -0.67 -4.51 16 31 H 0.11 0.08 7.82 -2.39 -0.02 0.06 16 32 H 0.39 -1.71 8.70 -74.06 -0.64 -2.36 16 33 H -0.29 -2.25 7.11 99.48 0.71 -1.54 16 34 H -0.29 -2.38 7.11 99.48 0.71 -1.68 16 35 H 0.14 0.31 4.70 -2.91 -0.01 0.29 16 36 H 0.42 -5.73 6.75 -92.71 -0.63 -6.35 16 37 H 0.11 -1.20 7.92 -2.38 -0.02 -1.22 16 38 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H 0.14 -2.62 7.82 -2.39 -0.02 -2.64 16 41 H 0.26 -3.29 8.06 -2.91 -0.02 -3.32 16 42 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16 43 H 0.08 -0.78 8.14 -2.38 -0.02 -0.80 16 44 H 0.13 -2.24 8.08 -2.39 -0.02 -2.26 16 45 H 0.17 -2.43 6.39 -2.91 -0.02 -2.45 16 Total: 0.00 -33.86 380.44 -0.99 -34.85 By element: Atomic # 1 Polarization: -31.30 SS G_CDS: -0.83 Total: -32.13 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.54 Total: 11.70 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -6.70 Total: -7.27 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -3.05 Total: -10.69 kcal Atomic # 14 Polarization: 1.49 SS G_CDS: 2.05 Total: 3.54 kcal Total: -33.86 -0.99 -34.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.953 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds