Wall clock time and date at job start Sun Mar 7 2021 00:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.34844 * 125.90041 * 149.68681 * 4 2 1 6 6 C 1.40939 * 107.46908 * 179.90638 * 5 4 2 7 7 C 1.34849 * 107.47079 * 0.35452 * 6 5 4 8 8 N 1.36568 * 108.19442 * 359.78677 * 7 6 5 9 9 C 1.40208 * 125.66602 * 179.97438 * 8 7 6 10 10 C 1.38831 * 120.06213 * 129.76637 * 9 8 7 11 11 C 1.38122 * 119.92984 * 179.76304 * 10 9 8 12 12 C 1.38274 * 120.06504 * 0.49009 * 11 10 9 13 13 C 1.50700 * 119.93579 * 179.74183 * 12 11 10 14 14 C 1.50700 * 109.47286 * 270.02459 * 13 12 11 15 15 O 1.21276 * 119.99808 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.46507 * 119.99645 * 179.97438 * 16 14 13 18 18 H 1.08997 * 112.85028 * 334.67349 * 17 16 14 19 19 C 1.53784 * 113.61203 * 105.86182 * 17 16 14 20 20 C 1.53952 * 87.01550 * 139.94913 * 19 17 16 21 21 H 1.09002 * 113.53542 * 89.19237 * 20 19 17 22 22 C 1.52997 * 113.66802 * 220.06558 * 20 19 17 23 23 N 1.46501 * 109.47384 * 272.56405 * 22 20 19 24 24 C 1.34433 * 126.82219 * 124.71032 * 23 22 20 25 25 N 1.30831 * 108.07552 * 179.89724 * 24 23 22 26 26 C 1.33235 * 109.83042 * 0.37966 * 25 24 23 27 27 N 1.30716 * 108.94912 * 359.76223 * 26 25 24 28 28 C 1.53774 * 113.61313 * 203.47115 * 17 16 14 29 29 C 1.38278 * 120.13271 * 359.76711 * 12 11 10 30 30 C 1.38122 * 120.06713 * 359.97438 * 29 12 11 31 31 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 32 32 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 33 33 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 34 34 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 35 35 H 1.08006 * 126.26548 * 0.03551 * 5 4 2 36 36 H 1.08005 * 126.26882 * 180.14453 * 6 5 4 37 37 H 1.07996 * 125.90604 * 179.78452 * 7 6 5 38 38 H 1.07996 * 120.03490 * 359.97438 * 10 9 8 39 39 H 1.07996 * 119.96769 * 180.20660 * 11 10 9 40 40 H 1.09000 * 109.47267 * 30.02144 * 13 12 11 41 41 H 1.09003 * 109.47150 * 150.01804 * 13 12 11 42 42 H 0.96998 * 120.00421 * 0.02562 * 16 14 13 43 43 H 1.08999 * 113.61611 * 254.53049 * 19 17 16 44 44 H 1.09004 * 113.61237 * 25.43639 * 19 17 16 45 45 H 1.08997 * 109.47196 * 32.56544 * 22 20 19 46 46 H 1.09004 * 109.47283 * 152.56455 * 22 20 19 47 47 H 1.08003 * 125.96165 * 0.03423 * 24 23 22 48 48 H 1.08002 * 125.53116 * 179.73249 * 26 25 24 49 49 H 1.08996 * 113.61610 * 334.56652 * 28 17 16 50 50 H 1.09000 * 113.61461 * 105.39377 * 28 17 16 51 51 H 1.08001 * 119.96593 * 179.97438 * 29 12 11 52 52 H 1.07994 * 120.03302 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 3.0839 -0.4484 -1.8795 6 6 3.1680 -1.3391 -2.9686 7 6 2.0599 -2.1073 -2.9498 8 7 1.2951 -1.7266 -1.8843 9 6 0.0614 -2.2858 -1.5222 10 6 -0.1593 -2.6955 -0.2142 11 6 -1.3774 -3.2415 0.1407 12 6 -2.3728 -3.3897 -0.8076 13 6 -3.6986 -3.9912 -0.4185 14 6 -3.6463 -5.4857 -0.6048 15 8 -2.6323 -6.0106 -1.0136 16 7 -4.7263 -6.2389 -0.3169 17 6 -4.6755 -7.6918 -0.4985 18 1 -3.9421 -7.9998 -1.2437 19 6 -4.5783 -8.4745 0.8216 20 6 -5.5586 -9.4862 0.2006 21 1 -5.0664 -10.2860 -0.3526 22 6 -6.6124 -10.0024 1.1824 23 7 -6.0841 -11.1662 1.8986 24 6 -5.9958 -11.3204 3.2311 25 7 -5.4722 -12.4952 3.4700 26 6 -5.2065 -13.1139 2.3203 27 7 -5.5637 -12.3399 1.3293 28 6 -6.0579 -8.3371 -0.6911 29 6 -2.1539 -2.9875 -2.1124 30 6 -0.9398 -2.4359 -2.4720 31 1 -0.3934 0.4416 -0.7651 32 1 1.7924 -0.5138 0.8900 33 1 1.5877 2.4585 -1.2243 34 1 1.5613 2.4680 1.2084 35 1 3.8108 0.3045 -1.6123 36 1 3.9711 -1.3938 -3.6887 37 1 1.8188 -2.8886 -3.6553 38 1 0.6193 -2.5841 0.5258 39 1 -1.5510 -3.5573 1.1588 40 1 -3.9088 -3.7624 0.6263 41 1 -4.4854 -3.5740 -1.0471 42 1 -5.5373 -5.8190 0.0098 43 1 -3.5874 -8.8863 1.0132 44 1 -4.9880 -7.9389 1.6780 45 1 -6.8588 -9.2171 1.8971 46 1 -7.5098 -10.2896 0.6345 47 1 -6.3055 -10.6009 3.9747 48 1 -4.7668 -14.0955 2.2227 49 1 -6.8728 -7.7639 -0.2491 50 1 -6.2604 -8.6370 -1.7193 51 1 -2.9331 -3.1049 -2.8510 52 1 -0.7696 -2.1216 -3.4911 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:38 Heat of formation + Delta-G solvation = 143.345433 kcal Electronic energy + Delta-G solvation = -34992.933297 eV Core-core repulsion = 30349.283447 eV Total energy + Delta-G solvation = -4643.649850 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.179 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.99588 -42.72513 -41.33870 -40.19578 -39.21420 -37.86944 -35.45183 -34.87588 -33.99115 -32.18572 -32.17858 -31.78737 -31.05728 -29.18922 -27.75479 -26.76779 -26.08810 -24.64479 -24.01591 -23.31979 -22.94689 -22.29840 -21.56609 -21.37617 -20.69522 -20.47438 -19.34210 -18.44126 -18.06814 -17.66904 -17.39109 -17.01664 -16.76151 -16.52167 -16.28115 -16.17115 -15.86637 -15.81176 -15.77326 -15.31133 -15.12027 -14.97704 -14.81731 -14.54748 -14.43596 -14.36036 -14.17797 -13.96839 -13.70321 -13.49037 -13.33117 -13.25327 -13.19842 -12.97416 -12.74766 -12.63360 -12.41679 -12.33050 -12.12654 -11.95340 -11.89464 -11.54358 -11.05610 -10.97904 -10.91990 -10.80572 -10.53578 -10.31418 -10.05732 -10.00453 -9.17613 -9.06026 -4.90722 -0.03695 0.32614 0.69191 1.04890 1.39441 1.44622 1.60441 1.65134 1.82068 1.98098 1.99983 2.09635 2.17106 2.71145 3.22283 3.36159 3.45964 3.47512 3.52819 3.59823 3.65075 3.71996 3.75532 3.85319 3.88382 3.98103 4.10970 4.14236 4.17335 4.20184 4.29331 4.39498 4.46373 4.50037 4.50722 4.53323 4.61034 4.64378 4.67544 4.73707 4.76648 4.83069 4.92450 4.93535 5.01035 5.16440 5.18452 5.22870 5.25850 5.30155 5.35447 5.44288 5.47366 5.56205 5.76887 5.92081 5.94964 6.17443 6.34173 6.47270 6.56283 7.12163 7.27477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.059 4.059 3 Si 0.802 3.198 4 C -0.028 4.028 5 C -0.193 4.193 6 C -0.198 4.198 7 C -0.026 4.026 8 N -0.399 5.399 9 C 0.111 3.889 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.068 4.068 13 C -0.097 4.097 14 C 0.512 3.488 15 O -0.585 6.585 16 N -0.705 5.705 17 C 0.118 3.882 18 H 0.080 0.920 19 C -0.142 4.142 20 C -0.118 4.118 21 H 0.077 0.923 22 C 0.136 3.864 23 N -0.377 5.377 24 C 0.257 3.743 25 N -0.586 5.586 26 C 0.186 3.814 27 N -0.352 5.352 28 C -0.114 4.114 29 C -0.098 4.098 30 C -0.129 4.129 31 H 0.378 0.622 32 H 0.123 0.877 33 H -0.295 1.295 34 H -0.292 1.292 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.422 0.578 43 H 0.039 0.961 44 H 0.112 0.888 45 H 0.144 0.856 46 H 0.101 0.899 47 H 0.260 0.740 48 H 0.230 0.770 49 H 0.127 0.873 50 H 0.079 0.921 51 H 0.145 0.855 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 5.081 1.573 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.168 4.168 3 Si 0.705 3.295 4 C -0.137 4.137 5 C -0.217 4.217 6 C -0.222 4.222 7 C -0.153 4.153 8 N -0.072 5.072 9 C 0.021 3.979 10 C -0.116 4.116 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.136 4.136 14 C 0.300 3.700 15 O -0.464 6.464 16 N -0.357 5.357 17 C 0.012 3.988 18 H 0.098 0.902 19 C -0.180 4.180 20 C -0.138 4.138 21 H 0.095 0.905 22 C 0.016 3.984 23 N -0.168 5.168 24 C -0.039 4.039 25 N -0.314 5.314 26 C -0.117 4.117 27 N -0.181 5.181 28 C -0.153 4.153 29 C -0.117 4.117 30 C -0.149 4.149 31 H 0.226 0.774 32 H 0.141 0.859 33 H -0.221 1.221 34 H -0.219 1.219 35 H 0.190 0.810 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.131 0.869 45 H 0.162 0.838 46 H 0.119 0.881 47 H 0.275 0.725 48 H 0.246 0.754 49 H 0.145 0.855 50 H 0.098 0.902 51 H 0.163 0.837 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.424 4.838 1.429 8.168 hybrid contribution -0.859 -0.425 -0.665 1.166 sum -7.282 4.413 0.764 8.550 Atomic orbital electron populations 1.86591 1.18088 1.80025 1.49607 1.25057 0.83573 1.11905 0.96220 0.93459 0.90029 0.69831 0.76164 1.21306 0.96851 0.95450 1.00082 1.21067 0.98120 1.04474 0.98012 1.21242 0.99547 0.99538 1.01921 1.22307 0.94103 1.04622 0.94302 1.41582 1.15193 1.27260 1.23162 1.17818 0.84986 1.00325 0.94737 1.20902 0.98274 0.97790 0.94585 1.21043 0.92190 0.98219 1.00327 1.19597 0.95904 0.97892 0.93491 1.20767 0.96107 0.89723 1.06996 1.21075 0.82834 0.90154 0.75963 1.90756 1.33145 1.75433 1.47068 1.45838 1.16007 1.06746 1.67138 1.22310 0.99242 0.79517 0.97700 0.90226 1.23598 0.99044 0.96916 0.98484 1.22565 0.96970 0.96640 0.97577 0.90503 1.22228 0.96210 0.83720 0.96267 1.50752 1.45746 1.14136 1.06153 1.26893 0.94919 0.95867 0.86256 1.70536 1.22754 1.08050 1.30057 1.26430 0.98720 1.01466 0.85077 1.77956 1.20698 0.95621 1.23787 1.23292 0.96182 0.94855 1.00927 1.21079 0.96856 0.97558 0.96173 1.21119 0.92808 1.01637 0.99296 0.77407 0.85889 1.22145 1.21950 0.81022 0.82598 0.81271 0.86421 0.84436 0.84931 0.84658 0.74004 0.94196 0.86936 0.83806 0.88065 0.72475 0.75361 0.85485 0.90212 0.83723 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.98 9.86 -148.98 -1.47 -3.45 16 2 C -0.06 -0.10 2.28 71.23 0.16 0.07 16 3 Si 0.80 -0.65 31.13 68.60 2.14 1.48 16 4 C -0.03 -0.13 6.02 41.04 0.25 0.12 16 5 C -0.19 -0.61 9.42 22.15 0.21 -0.40 16 6 C -0.20 -0.89 10.86 22.15 0.24 -0.65 16 7 C -0.03 -0.16 11.12 83.18 0.93 0.77 16 8 N -0.40 -2.76 2.87 -333.42 -0.96 -3.71 16 9 C 0.11 0.74 4.89 38.08 0.19 0.92 16 10 C -0.10 -0.60 7.66 22.38 0.17 -0.43 16 11 C -0.10 -0.33 9.69 22.25 0.22 -0.12 16 12 C -0.07 -0.06 4.38 -19.85 -0.09 -0.15 16 13 C -0.10 0.63 5.83 29.10 0.17 0.80 16 14 C 0.51 -0.18 7.82 87.66 0.69 0.50 16 15 O -0.58 -6.69 15.65 -3.02 -0.05 -6.74 16 16 N -0.70 5.03 5.36 -440.04 -2.36 2.67 16 17 C 0.12 -0.47 4.21 45.51 0.19 -0.28 16 18 H 0.08 0.30 7.50 -2.39 -0.02 0.29 16 19 C -0.14 0.67 7.45 31.18 0.23 0.90 16 20 C -0.12 0.71 3.88 -10.21 -0.04 0.67 16 21 H 0.08 0.08 8.00 -2.39 -0.02 0.06 16 22 C 0.14 -1.24 6.39 86.38 0.55 -0.69 16 23 N -0.38 0.25 3.69 -352.06 -1.30 -1.05 16 24 C 0.26 -0.35 12.63 180.36 2.28 1.92 16 25 N -0.59 -3.60 11.19 -204.00 -2.28 -5.88 16 26 C 0.19 1.10 13.03 180.77 2.36 3.46 16 27 N -0.35 -2.31 12.45 -61.25 -0.76 -3.08 16 28 C -0.11 1.16 7.39 31.12 0.23 1.39 16 29 C -0.10 -0.17 9.69 22.25 0.22 0.04 16 30 C -0.13 -0.56 9.66 22.38 0.22 -0.35 16 31 H 0.38 0.35 8.70 -74.06 -0.64 -0.30 16 32 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 33 H -0.29 -1.52 7.11 99.48 0.71 -0.81 16 34 H -0.29 -1.49 7.11 99.48 0.71 -0.79 16 35 H 0.17 -0.51 6.88 -2.91 -0.02 -0.53 16 36 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.12 0.78 7.67 -2.91 -0.02 0.76 16 39 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 40 H 0.13 -1.55 8.08 -2.39 -0.02 -1.57 16 41 H 0.14 -1.66 8.08 -2.39 -0.02 -1.68 16 42 H 0.42 -6.42 8.71 -92.71 -0.81 -7.23 16 43 H 0.04 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.11 -1.11 7.90 -2.39 -0.02 -1.13 16 45 H 0.14 -2.49 7.80 -2.39 -0.02 -2.51 16 46 H 0.10 -1.03 8.14 -2.38 -0.02 -1.05 16 47 H 0.26 -3.12 8.06 -2.91 -0.02 -3.14 16 48 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 49 H 0.13 -2.14 8.07 -2.39 -0.02 -2.16 16 50 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 51 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 52 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 Total: 0.00 -34.96 436.93 1.86 -33.10 By element: Atomic # 1 Polarization: -21.39 SS G_CDS: -0.45 Total: -21.85 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 9.36 Total: 8.50 kcal Atomic # 7 Polarization: -3.39 SS G_CDS: -7.66 Total: -11.05 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.52 Total: -10.19 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.14 Total: 1.48 kcal Total: -34.96 1.86 -33.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.441 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds