Wall clock time and date at job start Sun Mar 7 2021 00:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.46926 * 2 1 4 4 C 1.50692 * 109.47350 * 239.99837 * 2 1 3 5 5 C 1.38313 * 120.34711 * 120.01998 * 4 2 1 6 6 N 1.31957 * 121.08148 * 179.97438 * 5 4 2 7 7 C 1.31670 * 121.87900 * 359.72152 * 6 5 4 8 8 C 1.39562 * 120.56323 * 0.54668 * 7 6 5 9 9 C 1.47849 * 120.55930 * 179.74504 * 8 7 6 10 10 O 1.21541 * 119.99736 * 179.71648 * 9 8 7 11 11 N 1.34780 * 119.99718 * 359.72469 * 9 8 7 12 12 C 1.46497 * 119.99653 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.84935 * 334.66222 * 12 11 9 14 14 C 1.53786 * 113.61643 * 105.85894 * 12 11 9 15 15 C 1.54049 * 86.98426 * 140.01639 * 14 12 11 16 16 H 1.09003 * 113.61268 * 89.11946 * 15 14 12 17 17 C 1.53001 * 113.69672 * 220.01213 * 15 14 12 18 18 N 1.46509 * 109.46802 * 272.53533 * 17 15 14 19 19 C 1.34426 * 126.81968 * 125.00162 * 18 17 15 20 20 N 1.30829 * 108.07669 * 179.97438 * 19 18 17 21 21 C 1.33242 * 109.82659 * 359.97438 * 20 19 18 22 22 N 1.30711 * 108.94881 * 359.75571 * 21 20 19 23 23 C 1.53781 * 113.61305 * 203.46742 * 12 11 9 24 24 C 1.38396 * 120.34946 * 300.00216 * 4 2 1 25 25 H 0.96707 * 113.99717 * 60.00236 * 1 2 3 26 26 H 1.08996 * 109.46733 * 119.99708 * 2 1 3 27 27 H 1.48496 * 110.00117 * 59.99835 * 3 2 1 28 28 H 1.48494 * 109.99652 * 181.31715 * 3 2 1 29 29 H 1.08000 * 119.46141 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.72138 * 180.26699 * 7 6 5 31 31 H 0.96995 * 120.00200 * 359.97438 * 11 9 8 32 32 H 1.08992 * 113.61675 * 254.61383 * 14 12 11 33 33 H 1.09000 * 113.60973 * 25.51671 * 14 12 11 34 34 H 1.09002 * 109.47117 * 32.53319 * 17 15 14 35 35 H 1.08998 * 109.47421 * 152.53611 * 17 15 14 36 36 H 1.08000 * 125.96101 * 359.92380 * 19 18 17 37 37 H 1.08001 * 125.52176 * 179.97438 * 21 20 19 38 38 H 1.08999 * 113.61567 * 334.48111 * 23 12 11 39 39 H 1.09000 * 113.61379 * 105.30234 * 23 12 11 40 40 H 1.08003 * 120.85386 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7274 -0.0453 -2.1453 6 7 3.1756 -0.6533 -3.2272 7 6 2.8939 -1.9137 -3.4837 8 6 2.0921 -2.6531 -2.6129 9 6 1.7713 -4.0667 -2.9038 10 8 1.0762 -4.7025 -2.1358 11 7 2.2497 -4.6502 -4.0206 12 6 1.9322 -6.0511 -4.3086 13 1 1.7059 -6.6269 -3.4111 14 6 0.8978 -6.2299 -5.4324 15 6 1.7495 -7.4190 -5.9161 16 1 1.4732 -8.3688 -5.4583 17 6 1.8738 -7.5072 -7.4385 18 7 0.7486 -8.2760 -7.9766 19 6 -0.1176 -7.8797 -8.9250 20 7 -0.9721 -8.8499 -9.1255 21 6 -0.6844 -9.8775 -8.3275 22 7 0.3649 -9.5759 -7.6087 23 6 2.9484 -6.7343 -5.2389 24 6 1.6015 -2.0353 -1.4565 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 2.9870 0.9885 -1.9710 30 1 3.2830 -2.3781 -4.3778 31 1 2.8041 -4.1427 -4.6336 32 1 -0.0909 -6.5163 -5.0743 33 1 0.8697 -5.3981 -6.1363 34 1 1.8637 -6.5032 -7.8627 35 1 2.8094 -8.0022 -7.6986 36 1 -0.1101 -6.9263 -9.4324 37 1 -1.2278 -10.8098 -8.2844 38 1 3.4798 -6.0402 -5.8899 39 1 3.6148 -7.4266 -4.7243 40 1 0.9822 -2.5789 -0.7584 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13287814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:43 Heat of formation + Delta-G solvation = 95.192913 kcal Electronic energy + Delta-G solvation = -24909.986351 eV Core-core repulsion = 21115.539730 eV Total energy + Delta-G solvation = -3794.446622 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.97639 -41.98208 -40.87935 -39.46314 -37.95000 -35.58927 -34.30716 -33.76744 -32.82224 -32.15563 -29.10864 -27.29746 -26.77089 -26.20217 -24.18787 -23.78082 -22.92919 -22.38871 -21.71301 -20.59933 -19.19468 -18.49863 -18.13075 -17.84813 -17.72007 -17.08008 -16.63372 -16.48557 -16.31456 -16.02329 -15.93786 -15.69258 -15.15553 -15.01353 -14.72122 -14.44425 -14.38537 -14.22998 -13.68766 -13.51126 -13.46593 -13.20921 -12.76029 -12.70846 -12.42460 -12.16736 -11.88987 -11.56854 -11.43225 -11.10789 -10.96941 -10.78923 -10.63541 -10.60382 -10.51577 -10.32779 -10.10334 -5.03222 -0.59135 -0.04715 0.71349 1.21640 1.46616 1.59669 1.62818 1.91027 1.98530 2.02230 2.61542 3.09705 3.35077 3.37251 3.41771 3.46293 3.48508 3.55001 3.65204 3.70841 3.72268 3.77734 3.89247 4.09326 4.14676 4.18125 4.25225 4.39093 4.45416 4.52380 4.68508 4.71952 4.77910 4.82147 4.91347 4.92060 5.01628 5.14507 5.30866 5.32205 5.46058 5.49126 5.97173 6.35487 6.63084 6.68957 7.02851 7.14307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.787 3.213 4 C -0.176 4.176 5 C 0.130 3.870 6 N -0.492 5.492 7 C 0.150 3.850 8 C -0.197 4.197 9 C 0.563 3.437 10 O -0.580 6.580 11 N -0.694 5.694 12 C 0.116 3.884 13 H 0.086 0.914 14 C -0.141 4.141 15 C -0.116 4.116 16 H 0.079 0.921 17 C 0.136 3.864 18 N -0.378 5.378 19 C 0.257 3.743 20 N -0.586 5.586 21 C 0.185 3.815 22 N -0.351 5.351 23 C -0.114 4.114 24 C -0.005 4.005 25 H 0.397 0.603 26 H 0.110 0.890 27 H -0.296 1.296 28 H -0.274 1.274 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.420 0.580 32 H 0.043 0.957 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.260 0.740 37 H 0.230 0.770 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 6.384 -5.921 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.185 4.185 3 Si 0.691 3.309 4 C -0.179 4.179 5 C -0.026 4.026 6 N -0.199 5.199 7 C -0.008 4.008 8 C -0.203 4.203 9 C 0.351 3.649 10 O -0.460 6.460 11 N -0.346 5.346 12 C 0.011 3.989 13 H 0.104 0.896 14 C -0.180 4.180 15 C -0.136 4.136 16 H 0.097 0.903 17 C 0.015 3.985 18 N -0.168 5.168 19 C -0.039 4.039 20 N -0.314 5.314 21 C -0.117 4.117 22 N -0.180 5.180 23 C -0.153 4.153 24 C -0.032 4.032 25 H 0.247 0.753 26 H 0.127 0.873 27 H -0.224 1.224 28 H -0.200 1.200 29 H 0.200 0.800 30 H 0.214 0.786 31 H 0.259 0.741 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.275 0.725 37 H 0.246 0.754 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.829 6.237 -4.696 9.743 hybrid contribution -0.608 -1.237 1.061 1.740 sum 5.221 5.000 -3.634 8.091 Atomic orbital electron populations 1.86513 1.17075 1.82194 1.50544 1.25271 0.85478 1.11644 0.96148 0.93724 0.78026 0.73746 0.85438 1.21433 1.01504 0.95166 0.99769 1.23221 0.90703 1.00534 0.88114 1.67821 1.21955 1.10663 1.19476 1.23508 0.90474 0.89159 0.97699 1.21008 1.04950 0.95123 0.99173 1.18305 0.79000 0.86289 0.81349 1.90806 1.39910 1.65728 1.49593 1.45710 1.52640 1.12875 1.23326 1.22475 0.97773 0.81360 0.97321 0.89594 1.23631 0.97443 0.98649 0.98287 1.22569 0.98377 0.98307 0.94356 0.90270 1.22237 0.86244 0.96880 0.93113 1.50755 1.25244 1.10993 1.29825 1.26894 0.85961 1.00815 0.90223 1.70539 1.29665 1.02567 1.28669 1.26427 0.93744 1.00046 0.91521 1.77952 1.18090 0.96399 1.25570 1.23323 0.95484 0.99418 0.97058 1.21634 0.93174 0.93721 0.94629 0.75302 0.87277 1.22415 1.20046 0.79953 0.78570 0.74083 0.93767 0.86770 0.83714 0.88014 0.72451 0.75399 0.85294 0.89915 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.32 12.78 -148.98 -1.90 -1.59 16 2 C -0.08 0.17 2.83 71.23 0.20 0.37 16 3 Si 0.79 -4.22 29.82 68.60 2.05 -2.17 16 4 C -0.18 0.26 5.39 -19.81 -0.11 0.16 16 5 C 0.13 -0.44 9.84 84.69 0.83 0.40 16 6 N -0.49 0.99 10.35 -194.75 -2.01 -1.02 16 7 C 0.15 -0.73 10.71 85.04 0.91 0.18 16 8 C -0.20 -0.01 5.89 -19.99 -0.12 -0.12 16 9 C 0.56 1.62 7.78 86.79 0.68 2.29 16 10 O -0.58 -7.61 16.04 -3.84 -0.06 -7.67 16 11 N -0.69 3.93 5.32 -442.91 -2.35 1.58 16 12 C 0.12 -0.48 4.21 45.52 0.19 -0.29 16 13 H 0.09 0.26 7.50 -2.39 -0.02 0.24 16 14 C -0.14 0.76 7.45 31.21 0.23 0.99 16 15 C -0.12 0.79 3.88 -10.18 -0.04 0.75 16 16 H 0.08 0.00 8.01 -2.39 -0.02 -0.01 16 17 C 0.14 -1.33 6.39 86.38 0.55 -0.77 16 18 N -0.38 0.45 3.69 -352.04 -1.30 -0.85 16 19 C 0.26 -0.47 12.63 180.36 2.28 1.81 16 20 N -0.59 -3.40 11.19 -204.01 -2.28 -5.68 16 21 C 0.19 1.03 13.03 180.77 2.36 3.39 16 22 N -0.35 -2.14 12.46 -61.25 -0.76 -2.90 16 23 C -0.11 1.23 7.39 31.12 0.23 1.46 16 24 C -0.01 -0.01 9.31 22.73 0.21 0.20 16 25 H 0.40 -3.60 8.70 -74.05 -0.64 -4.24 16 26 H 0.11 -0.07 7.96 -2.39 -0.02 -0.08 16 27 H -0.30 -0.81 7.11 99.48 0.71 -0.10 16 28 H -0.27 0.48 7.11 99.48 0.71 1.19 16 29 H 0.18 -1.53 4.88 -2.91 -0.01 -1.54 16 30 H 0.20 -2.66 6.42 -2.91 -0.02 -2.68 16 31 H 0.42 -5.79 6.78 -92.71 -0.63 -6.42 16 32 H 0.04 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.11 -1.20 7.91 -2.39 -0.02 -1.22 16 34 H 0.15 -2.60 7.80 -2.39 -0.02 -2.62 16 35 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 36 H 0.26 -3.24 8.06 -2.91 -0.02 -3.26 16 37 H 0.23 0.03 8.06 -2.91 -0.02 0.00 16 38 H 0.13 -2.26 8.07 -2.39 -0.02 -2.28 16 39 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.13 0.81 7.74 -2.91 -0.02 0.78 16 Total: 0.00 -33.25 344.90 -0.36 -33.61 By element: Atomic # 1 Polarization: -23.98 SS G_CDS: -0.13 Total: -24.11 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 8.41 Total: 10.82 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -8.71 Total: -8.88 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -1.97 Total: -9.26 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.05 Total: -2.17 kcal Total: -33.25 -0.36 -33.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.802 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds