Wall clock time and date at job start Sun Mar 7 2021 00:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36414 * 125.80314 * 2 1 4 4 C 1.47383 * 127.19202 * 359.95911 * 3 2 1 5 5 O 1.21621 * 119.99692 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00167 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00261 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.84468 * 336.19869 * 7 6 4 9 9 C 1.53958 * 113.73944 * 107.39820 * 7 6 4 10 10 C 1.53788 * 87.01354 * 139.94768 * 9 7 6 11 11 H 1.09001 * 113.61737 * 89.23240 * 10 9 7 12 12 C 1.53003 * 113.60950 * 220.04693 * 10 9 7 13 13 N 1.46495 * 109.47179 * 274.13544 * 12 10 9 14 14 C 1.34428 * 126.82196 * 125.00293 * 13 12 10 15 15 N 1.30834 * 108.08033 * 180.02562 * 14 13 12 16 16 C 1.33241 * 109.82716 * 0.02562 * 15 14 13 17 17 N 1.30718 * 108.94820 * 359.97438 * 16 15 14 18 18 C 1.53776 * 113.61679 * 205.00049 * 7 6 4 19 19 C 1.47022 * 105.61650 * 180.22049 * 3 2 1 20 20 C 1.34173 * 105.95127 * 359.62741 * 19 3 2 21 21 C 1.50703 * 125.43750 * 180.12400 * 20 19 3 22 22 O 1.42898 * 109.47196 * 300.31833 * 21 20 19 23 23 Si 1.86302 * 109.47158 * 180.31568 * 21 20 19 24 24 O 1.33650 * 125.80055 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46468 * 90.00228 * 1 2 3 26 26 H 1.09001 * 109.47166 * 210.00023 * 1 2 3 27 27 H 1.09001 * 109.47209 * 330.00930 * 1 2 3 28 28 H 0.97005 * 119.99855 * 359.97438 * 6 4 3 29 29 H 1.08997 * 113.61474 * 25.43069 * 9 7 6 30 30 H 1.08994 * 113.66626 * 254.47053 * 9 7 6 31 31 H 1.09004 * 109.46516 * 154.13806 * 12 10 9 32 32 H 1.09000 * 109.47268 * 34.13750 * 12 10 9 33 33 H 1.08001 * 125.96487 * 0.02562 * 14 13 12 34 34 H 1.08002 * 125.52885 * 180.02562 * 16 15 14 35 35 H 1.08991 * 113.61495 * 105.38708 * 18 7 6 36 36 H 1.09003 * 113.68793 * 334.49511 * 18 7 6 37 37 H 1.07993 * 127.02182 * 179.74416 * 19 3 2 38 38 H 1.08998 * 109.46677 * 60.31611 * 21 20 19 39 39 H 0.96703 * 114.00073 * 299.99870 * 22 21 20 40 40 H 1.48507 * 109.99669 * 179.97438 * 23 21 20 41 41 H 1.48492 * 110.00439 * 301.32040 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.1064 0.0000 4 6 1.8741 2.5158 -0.0008 5 8 0.6890 2.7892 -0.0021 6 7 2.7931 3.5015 -0.0012 7 6 2.3647 4.9025 -0.0026 8 1 1.3622 5.0380 -0.4086 9 6 2.5857 5.6196 1.3417 10 6 3.0264 6.8451 0.5237 11 1 2.2059 7.5128 0.2611 12 6 4.2246 7.5836 1.1236 13 7 3.7543 8.5488 2.1203 14 6 4.1440 8.6360 3.4039 15 7 3.4926 9.6253 3.9596 16 6 2.6812 10.1904 3.0665 17 7 2.8061 9.5662 1.9248 18 6 3.4059 5.8645 -0.5984 19 6 3.6850 0.5990 -0.0054 20 6 3.5859 -0.7390 0.0002 21 6 4.7459 -1.7011 0.0004 22 8 5.5430 -1.4864 -1.1660 23 14 4.1026 -3.4495 -0.0002 24 8 2.2889 -1.0840 0.0005 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 3.7383 3.2834 -0.0006 29 1 3.3849 5.1850 1.9421 30 1 1.6685 5.7796 1.9082 31 1 4.7602 8.1093 0.3331 32 1 4.8926 6.8658 1.5998 33 1 4.8684 8.0004 3.8915 34 1 2.0271 11.0289 3.2551 35 1 3.1498 6.2220 -1.5957 36 1 4.4302 5.4981 -0.5302 37 1 4.5928 1.1839 -0.0108 38 1 5.3532 -1.5377 0.8906 39 1 5.0660 -1.6146 -1.9974 40 1 5.2369 -4.4080 -0.0007 41 1 3.2461 -3.6761 1.1915 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:46 Heat of formation + Delta-G solvation = 70.427637 kcal Electronic energy + Delta-G solvation = -25838.773658 eV Core-core repulsion = 21918.222993 eV Total energy + Delta-G solvation = -3920.550665 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.77744 -42.99072 -41.12111 -39.47367 -37.99289 -35.50774 -34.42087 -33.73004 -33.02645 -32.17016 -29.59385 -28.93363 -26.77777 -26.13143 -24.89799 -23.75350 -22.94661 -22.59299 -21.74958 -21.22101 -20.19868 -18.89502 -18.37747 -17.95189 -17.70945 -17.29387 -16.79964 -16.63593 -16.29108 -16.01905 -15.90946 -15.66644 -15.61862 -15.06609 -14.83562 -14.44691 -14.26923 -14.24391 -13.98130 -13.84290 -13.65834 -13.49673 -13.22746 -12.88457 -12.76649 -12.72831 -12.36873 -12.25298 -11.89816 -11.55718 -11.15034 -10.97906 -10.94275 -10.80057 -10.62169 -10.52605 -10.11144 -9.57837 -5.00572 0.21122 0.69624 0.82764 1.18293 1.39495 1.44699 1.76012 1.91277 2.00505 2.14902 2.21386 3.21596 3.35967 3.45150 3.46406 3.48231 3.53211 3.68856 3.76218 3.79969 3.88513 4.09863 4.13982 4.16227 4.31967 4.37730 4.46661 4.50071 4.57536 4.62609 4.66750 4.71359 4.76188 4.81350 4.91383 5.00690 5.10958 5.20987 5.22314 5.30486 5.45164 5.52859 5.89188 5.94745 6.48149 6.63067 7.12631 7.15118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.083 3.917 3 C -0.269 4.269 4 C 0.587 3.413 5 O -0.579 6.579 6 N -0.698 5.698 7 C 0.118 3.882 8 H 0.090 0.910 9 C -0.142 4.142 10 C -0.114 4.114 11 H 0.082 0.918 12 C 0.136 3.864 13 N -0.377 5.377 14 C 0.256 3.744 15 N -0.586 5.586 16 C 0.186 3.814 17 N -0.350 5.350 18 C -0.115 4.115 19 C -0.144 4.144 20 C -0.062 4.062 21 C -0.020 4.020 22 O -0.538 6.538 23 Si 0.771 3.229 24 O -0.173 6.173 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.416 0.584 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.258 0.742 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.182 0.818 38 H 0.141 0.859 39 H 0.400 0.600 40 H -0.279 1.279 41 H -0.297 1.297 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 -3.774 -3.321 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 C -0.273 4.273 4 C 0.377 3.623 5 O -0.460 6.460 6 N -0.348 5.348 7 C 0.013 3.987 8 H 0.108 0.892 9 C -0.181 4.181 10 C -0.134 4.134 11 H 0.100 0.900 12 C 0.015 3.985 13 N -0.168 5.168 14 C -0.040 4.040 15 N -0.314 5.314 16 C -0.117 4.117 17 N -0.179 5.179 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.109 4.109 21 C -0.131 4.131 22 O -0.346 6.346 23 Si 0.676 3.324 24 O -0.070 6.070 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.254 0.746 29 H 0.126 0.874 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.274 0.726 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.199 0.801 38 H 0.158 0.842 39 H 0.251 0.749 40 H -0.206 1.206 41 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 4.698 -4.284 -2.868 6.975 hybrid contribution 0.268 0.613 0.522 0.848 sum 4.966 -3.672 -2.346 6.607 Atomic orbital electron populations 1.20694 0.82847 1.05264 1.05326 1.23204 0.94718 0.83135 0.95984 1.21218 0.94363 0.93366 1.18349 1.17456 0.85296 0.84608 0.74963 1.90766 1.18267 1.84605 1.52398 1.45618 1.09967 1.05063 1.74189 1.22466 0.99714 0.78970 0.97518 0.89221 1.23593 1.01941 0.95706 0.96839 1.22518 0.98234 0.95088 0.97568 0.89981 1.22215 0.96102 0.89324 0.90830 1.50743 1.30408 1.24726 1.10903 1.26870 0.98248 0.96130 0.82732 1.70543 1.13668 1.12443 1.34724 1.26448 0.98428 1.00611 0.86211 1.77957 1.11525 1.03832 1.24566 1.23304 1.00375 0.93401 0.98316 1.22791 0.96291 0.93536 1.03676 1.22943 0.82800 0.96152 1.09047 1.24381 0.89329 1.06626 0.92720 1.86532 1.38665 1.93294 1.16114 0.93298 0.78973 0.72816 0.87329 1.83675 1.16877 1.34990 1.71468 0.88006 0.88550 0.88817 0.74628 0.87446 0.93657 0.88001 0.84069 0.72614 0.75277 0.89810 0.85908 0.80106 0.84244 0.74917 1.20589 1.22435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 9.89 71.24 0.70 0.68 16 2 C 0.08 0.23 7.37 25.26 0.19 0.42 16 3 C -0.27 -0.69 6.31 -18.99 -0.12 -0.81 16 4 C 0.59 2.85 7.81 86.65 0.68 3.53 16 5 O -0.58 -7.11 14.45 -4.10 -0.06 -7.17 16 6 N -0.70 1.79 5.36 -443.06 -2.37 -0.58 16 7 C 0.12 -0.28 4.24 45.58 0.19 -0.08 16 8 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 9 C -0.14 0.50 7.45 31.18 0.23 0.74 16 10 C -0.11 0.62 3.86 -10.26 -0.04 0.58 16 11 H 0.08 0.06 8.03 -2.39 -0.02 0.04 16 12 C 0.14 -1.13 6.37 86.38 0.55 -0.58 16 13 N -0.38 0.08 3.69 -352.06 -1.30 -1.22 16 14 C 0.26 -0.22 12.63 180.36 2.28 2.06 16 15 N -0.59 -3.77 11.19 -203.99 -2.28 -6.05 16 16 C 0.19 1.12 13.03 180.76 2.36 3.47 16 17 N -0.35 -2.33 12.47 -61.24 -0.76 -3.09 16 18 C -0.12 1.02 7.40 31.12 0.23 1.25 16 19 C -0.14 0.32 10.46 23.65 0.25 0.56 16 20 C -0.06 0.10 6.20 24.76 0.15 0.25 16 21 C -0.02 0.09 2.97 71.24 0.21 0.30 16 22 O -0.54 2.90 12.86 -148.98 -1.92 0.98 16 23 Si 0.77 -2.68 32.09 68.60 2.20 -0.48 16 24 O -0.17 -0.22 8.89 4.50 0.04 -0.18 16 25 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.09 0.38 6.49 -2.39 -0.02 0.37 16 28 H 0.42 -3.70 7.90 -92.70 -0.73 -4.43 16 29 H 0.11 -0.82 7.92 -2.39 -0.02 -0.84 16 30 H 0.04 0.12 8.14 -2.39 -0.02 0.11 16 31 H 0.10 -0.96 8.14 -2.38 -0.02 -0.98 16 32 H 0.14 -2.26 7.82 -2.39 -0.02 -2.28 16 33 H 0.26 -2.90 8.06 -2.91 -0.02 -2.92 16 34 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.12 -1.80 8.08 -2.39 -0.02 -1.82 16 37 H 0.18 -1.42 7.74 -2.91 -0.02 -1.44 16 38 H 0.14 -0.83 7.96 -2.39 -0.02 -0.84 16 39 H 0.40 -5.03 8.70 -74.06 -0.64 -5.67 16 40 H -0.28 -0.56 7.11 99.48 0.71 0.14 16 41 H -0.30 -1.18 7.11 99.48 0.71 -0.48 16 Total: 0.00 -28.44 356.12 1.15 -27.30 By element: Atomic # 1 Polarization: -21.62 SS G_CDS: -0.26 Total: -21.87 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 7.86 Total: 12.37 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -6.72 Total: -10.95 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -1.94 Total: -6.37 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.20 Total: -0.48 kcal Total: -28.44 1.15 -27.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.723 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds