Wall clock time and date at job start Sun Mar 7 2021 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47682 * 2 1 4 4 C 1.50698 * 109.47124 * 239.99908 * 2 1 3 5 5 C 1.33746 * 125.12302 * 300.00489 * 4 2 1 6 6 C 1.37789 * 115.08345 * 180.02562 * 5 4 2 7 7 C 1.34982 * 114.70511 * 359.97438 * 6 5 4 8 8 C 1.47555 * 125.28026 * 179.97438 * 7 6 5 9 9 C 1.39826 * 120.00196 * 180.02562 * 8 7 6 10 10 C 1.36555 * 120.00198 * 179.97438 * 9 8 7 11 11 C 1.39835 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.47555 * 120.00445 * 179.72646 * 11 10 9 13 13 O 1.21595 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00392 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.85294 * 23.79881 * 15 14 12 17 17 C 1.53781 * 113.61539 * 155.00148 * 15 14 12 18 18 C 1.53775 * 87.08117 * 139.97925 * 17 15 14 19 19 H 1.09007 * 113.61608 * 89.20047 * 18 17 15 20 20 C 1.53004 * 113.61267 * 220.01339 * 18 17 15 21 21 N 1.46502 * 109.46890 * 184.99871 * 20 18 17 22 22 C 1.34428 * 126.81988 * 125.00824 * 21 20 18 23 23 N 1.30828 * 108.07567 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.83133 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94522 * 359.75408 * 24 23 22 26 26 C 1.53776 * 87.08471 * 334.56513 * 18 17 15 27 27 C 1.39834 * 119.99462 * 0.02562 * 11 10 9 28 28 C 1.36560 * 120.00037 * 0.02562 * 27 11 10 29 29 S 1.75866 * 125.11958 * 120.28498 * 4 2 1 30 30 H 0.96697 * 113.99875 * 300.00379 * 1 2 3 31 31 H 1.09005 * 109.47152 * 120.00174 * 2 1 3 32 32 H 1.48505 * 109.99887 * 300.00336 * 3 2 1 33 33 H 1.48503 * 109.99853 * 61.31695 * 3 2 1 34 34 H 1.08000 * 122.45326 * 0.02562 * 5 4 2 35 35 H 1.08000 * 122.64856 * 180.02562 * 6 5 4 36 36 H 1.08002 * 119.99516 * 359.97167 * 9 8 7 37 37 H 1.08005 * 120.00041 * 180.02562 * 10 9 8 38 38 H 0.96998 * 119.99534 * 359.97438 * 14 12 11 39 39 H 1.09010 * 113.60875 * 254.52659 * 17 15 14 40 40 H 1.08996 * 113.61762 * 25.42667 * 17 15 14 41 41 H 1.08995 * 109.47664 * 305.00288 * 20 18 17 42 42 H 1.09003 * 109.46732 * 65.00233 * 20 18 17 43 43 H 1.08004 * 125.95991 * 359.97438 * 22 21 20 44 44 H 1.07998 * 125.52774 * 179.97438 * 24 23 22 45 45 H 1.08992 * 113.61345 * 270.88893 * 26 18 17 46 46 H 1.09002 * 113.61455 * 139.98042 * 26 18 17 47 47 H 1.08001 * 119.99876 * 179.97438 * 27 11 10 48 48 H 1.08000 * 120.00110 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6720 -1.9847 -1.5430 6 6 2.2380 -2.4244 -2.7198 7 6 2.9675 -1.4973 -3.3758 8 6 3.6737 -1.7157 -4.6529 9 6 4.4004 -0.6738 -5.2371 10 6 5.0543 -0.8761 -6.4187 11 6 4.9977 -2.1255 -7.0442 12 6 5.6993 -2.3424 -8.3240 13 8 6.3272 -1.4348 -8.8346 14 7 5.6443 -3.5464 -8.9271 15 6 6.3414 -3.7619 -10.1975 16 1 7.1704 -3.0704 -10.3481 17 6 6.7108 -5.2322 -10.4557 18 6 6.3123 -4.9930 -11.9215 19 1 7.1334 -4.6393 -12.5452 20 6 5.5514 -6.1630 -12.5485 21 7 5.3226 -5.8911 -13.9698 22 6 5.6699 -6.6740 -15.0059 23 7 5.2911 -6.0801 -16.1083 24 6 4.7006 -4.9216 -15.8177 25 7 4.6908 -4.7640 -14.5201 26 6 5.3981 -3.8684 -11.4074 27 6 4.2709 -3.1675 -6.4599 28 6 3.6161 -2.9648 -5.2788 29 16 2.9525 0.0093 -2.4682 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5139 0.8900 32 1 1.5616 2.4679 -1.2085 33 1 1.5880 2.4585 1.2242 34 1 1.0637 -2.6223 -0.9186 35 1 2.1075 -3.4310 -3.0887 36 1 4.4444 0.2911 -4.7538 37 1 5.6160 -0.0714 -6.8698 38 1 5.1438 -4.2705 -8.5196 39 1 7.7712 -5.4460 -10.3209 40 1 6.0657 -5.9420 -9.9380 41 1 6.1375 -7.0759 -12.4430 42 1 4.5934 -6.2858 -12.0433 43 1 6.1738 -7.6270 -14.9398 44 1 4.2928 -4.2271 -16.5373 45 1 4.3941 -4.2054 -11.1498 46 1 5.3985 -2.9813 -12.0408 47 1 4.2268 -4.1323 -6.9431 48 1 3.0545 -3.7694 -4.8277 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:51 Heat of formation + Delta-G solvation = 120.356775 kcal Electronic energy + Delta-G solvation = -31709.126311 eV Core-core repulsion = 27246.369234 eV Total energy + Delta-G solvation = -4462.757077 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.125 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.97376 -41.54542 -40.47153 -39.45652 -38.83077 -37.54700 -35.54758 -34.28717 -33.36399 -32.25318 -32.10728 -30.64068 -29.15020 -27.28718 -26.89675 -25.17926 -24.26940 -23.85560 -23.27209 -22.87594 -22.37069 -21.58278 -20.92129 -20.11647 -19.04561 -18.73651 -18.38950 -18.31407 -17.43882 -17.02149 -16.84416 -16.34418 -16.28283 -16.07330 -15.95409 -15.74068 -15.61726 -15.42793 -15.08108 -14.98287 -14.70880 -14.56115 -14.47040 -14.20417 -14.07336 -13.80180 -13.63329 -13.45878 -13.31645 -13.15567 -13.10436 -12.93006 -12.72859 -12.38906 -12.34626 -12.18941 -12.04252 -11.61164 -11.53579 -10.95413 -10.90092 -10.83096 -10.71240 -10.60804 -10.53894 -10.22471 -10.09554 -9.53923 -9.02392 -5.15514 -0.88707 0.24133 0.31073 0.37308 0.70017 0.73521 1.13655 1.31953 1.49278 1.58205 1.83059 2.00292 2.05911 2.08193 2.82830 3.09923 3.18346 3.25956 3.39236 3.41343 3.46184 3.59377 3.62124 3.67765 3.72406 3.78339 3.83833 3.95765 3.99784 4.09749 4.14149 4.23652 4.27288 4.39869 4.40334 4.47338 4.50095 4.55727 4.58082 4.62447 4.80676 4.86253 4.97480 5.01224 5.06121 5.09352 5.20565 5.26178 5.28386 5.32095 5.44715 5.45580 5.51175 5.70301 5.83218 6.28314 6.41214 7.16727 7.16787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.034 4.034 3 Si 0.645 3.355 4 C -0.172 4.172 5 C -0.105 4.105 6 C -0.117 4.117 7 C -0.151 4.151 8 C 0.015 3.985 9 C -0.120 4.120 10 C -0.048 4.048 11 C -0.138 4.138 12 C 0.561 3.439 13 O -0.532 6.532 14 N -0.717 5.717 15 C 0.123 3.877 16 H 0.118 0.882 17 C -0.137 4.137 18 C -0.119 4.119 19 H 0.101 0.899 20 C 0.140 3.860 21 N -0.379 5.379 22 C 0.252 3.748 23 N -0.547 5.547 24 C 0.197 3.803 25 N -0.312 5.312 26 C -0.135 4.135 27 C -0.078 4.078 28 C -0.110 4.110 29 S 0.142 5.858 30 H 0.383 0.617 31 H 0.087 0.913 32 H -0.235 1.235 33 H -0.238 1.238 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.400 0.600 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -5.358 5.690 7.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.146 4.146 3 Si 0.543 3.457 4 C -0.290 4.290 5 C -0.135 4.135 6 C -0.148 4.148 7 C -0.268 4.268 8 C 0.013 3.987 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.141 4.141 12 C 0.349 3.651 13 O -0.409 6.409 14 N -0.368 5.368 15 C 0.018 3.982 16 H 0.136 0.864 17 C -0.176 4.176 18 C -0.139 4.139 19 H 0.119 0.881 20 C 0.018 3.982 21 N -0.170 5.170 22 C -0.045 4.045 23 N -0.274 5.274 24 C -0.106 4.106 25 N -0.140 5.140 26 C -0.174 4.174 27 C -0.097 4.097 28 C -0.130 4.130 29 S 0.409 5.591 30 H 0.232 0.768 31 H 0.105 0.895 32 H -0.159 1.159 33 H -0.161 1.161 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.236 0.764 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.234 0.766 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.983 -2.213 4.714 5.572 hybrid contribution -1.954 -2.188 1.073 3.124 sum 0.029 -4.401 5.787 7.271 Atomic orbital electron populations 1.86603 1.17343 1.80056 1.49989 1.24010 0.84531 1.09990 0.96106 0.95292 0.91834 0.75396 0.83165 1.23827 1.06349 0.97914 1.00866 1.19969 1.01040 0.95007 0.97520 1.20353 0.98645 1.00511 0.95265 1.23067 1.06273 0.98075 0.99401 1.18293 0.95096 0.94082 0.91209 1.20982 0.97990 0.98756 0.96180 1.20950 0.95956 0.96256 0.93548 1.20008 1.02253 0.95609 0.96267 1.18254 0.80150 0.82524 0.84199 1.90812 1.42309 1.42112 1.65716 1.45869 1.53700 1.13341 1.23900 1.22529 0.96315 0.97003 0.82383 0.86375 1.23385 1.02939 0.96521 0.94731 1.22630 0.99530 0.95980 0.95773 0.88090 1.21868 1.01588 0.98915 0.75803 1.50584 1.43140 1.15282 1.08025 1.26130 0.97538 0.98339 0.82509 1.70561 1.19550 1.08921 1.28374 1.26075 0.97730 0.94791 0.92021 1.78096 1.18924 1.06156 1.10781 1.23463 0.98232 0.99116 0.96567 1.20937 0.95432 0.98094 0.95217 1.20863 1.00266 0.96382 0.95510 1.84114 1.48120 1.12589 1.14284 0.76848 0.89492 1.15902 1.16086 0.83769 0.83726 0.85113 0.84064 0.76395 0.89848 0.89006 0.87676 0.89091 0.76554 0.76724 0.89477 0.90328 0.85302 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.31 12.83 -35.23 -0.45 -0.76 16 2 C -0.03 0.02 2.95 36.00 0.11 0.12 16 3 Si 0.64 -0.56 30.96 -169.99 -5.26 -5.82 16 4 C -0.17 -0.16 5.76 -35.88 -0.21 -0.36 16 5 C -0.11 -0.07 10.00 -41.32 -0.41 -0.48 16 6 C -0.12 -0.01 9.64 -40.90 -0.39 -0.41 16 7 C -0.15 -0.12 6.37 -36.94 -0.24 -0.36 16 8 C 0.02 0.01 5.88 -104.91 -0.62 -0.61 16 9 C -0.12 -0.09 9.54 -39.60 -0.38 -0.46 16 10 C -0.05 -0.07 9.53 -39.59 -0.38 -0.44 16 11 C -0.14 -0.13 5.88 -104.90 -0.62 -0.74 16 12 C 0.56 1.22 7.76 -12.46 -0.10 1.12 16 13 O -0.53 -3.25 15.93 5.28 0.08 -3.17 16 14 N -0.72 0.82 5.30 -54.05 -0.29 0.53 16 15 C 0.12 -0.15 4.24 -67.12 -0.28 -0.43 16 16 H 0.12 0.10 7.46 -51.93 -0.39 -0.28 16 17 C -0.14 0.57 7.39 -25.92 -0.19 0.38 16 18 C -0.12 0.34 3.86 -89.81 -0.35 -0.01 16 19 H 0.10 -0.15 8.14 -51.92 -0.42 -0.57 16 20 C 0.14 -0.50 6.39 -4.04 -0.03 -0.53 16 21 N -0.38 0.03 3.69 -62.63 -0.23 -0.20 16 22 C 0.25 -0.05 12.63 -90.66 -1.14 -1.20 16 23 N -0.55 -1.58 11.19 -15.83 -0.18 -1.76 16 24 C 0.20 0.46 13.03 -91.82 -1.20 -0.74 16 25 N -0.31 -0.83 12.58 29.29 0.37 -0.46 16 26 C -0.14 0.14 7.43 -25.92 -0.19 -0.06 16 27 C -0.08 0.11 9.48 -39.59 -0.38 -0.27 16 28 C -0.11 0.11 9.48 -39.59 -0.38 -0.27 16 29 S 0.14 0.09 19.46 -107.50 -2.09 -2.00 16 30 H 0.38 -1.37 8.74 45.56 0.40 -0.97 16 31 H 0.09 -0.21 7.96 -51.93 -0.41 -0.63 16 32 H -0.24 -0.53 7.11 56.52 0.40 -0.13 16 33 H -0.24 -0.10 7.11 56.52 0.40 0.31 16 34 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 35 H 0.15 -0.30 6.88 -52.49 -0.36 -0.66 16 36 H 0.13 -0.06 7.26 -52.49 -0.38 -0.44 16 37 H 0.14 0.21 7.64 -52.48 -0.40 -0.19 16 38 H 0.40 -1.61 6.74 -40.82 -0.28 -1.88 16 39 H 0.08 -0.35 8.14 -51.92 -0.42 -0.78 16 40 H 0.09 -0.54 8.08 -51.93 -0.42 -0.96 16 41 H 0.11 -0.68 8.09 -51.93 -0.42 -1.10 16 42 H 0.09 -0.36 7.84 -51.93 -0.41 -0.77 16 43 H 0.22 -1.02 8.06 -52.48 -0.42 -1.44 16 44 H 0.22 -0.12 8.06 -52.49 -0.42 -0.55 16 45 H 0.09 -0.11 7.89 -51.93 -0.41 -0.52 16 46 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.13 -0.58 6.38 -52.49 -0.34 -0.92 16 48 H 0.13 -0.41 6.74 -52.49 -0.35 -0.76 16 LS Contribution 419.70 15.07 6.32 6.32 Total: 0.00 -12.09 419.70 -14.99 -27.08 By element: Atomic # 1 Polarization: -8.12 SS G_CDS: -5.90 Total: -14.02 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -7.36 Total: -5.75 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -0.33 Total: -1.88 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.37 Total: -3.93 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: -5.26 Total: -5.82 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.09 Total: -2.00 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -12.09 -14.99 -27.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.435 kcal (2) G-P(sol) polarization free energy of solvation -12.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds