Wall clock time and date at job start Sun Mar 7 2021 00:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47682 * 2 1 4 4 C 1.50698 * 109.47124 * 239.99908 * 2 1 3 5 5 C 1.33746 * 125.12302 * 300.00489 * 4 2 1 6 6 C 1.37789 * 115.08345 * 180.02562 * 5 4 2 7 7 C 1.34982 * 114.70511 * 359.97438 * 6 5 4 8 8 C 1.47555 * 125.28026 * 179.97438 * 7 6 5 9 9 C 1.39826 * 120.00196 * 180.02562 * 8 7 6 10 10 C 1.36555 * 120.00198 * 179.97438 * 9 8 7 11 11 C 1.39835 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.47555 * 120.00445 * 179.72646 * 11 10 9 13 13 O 1.21595 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00392 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.85294 * 23.79881 * 15 14 12 17 17 C 1.53781 * 113.61539 * 155.00148 * 15 14 12 18 18 C 1.53775 * 87.08117 * 139.97925 * 17 15 14 19 19 H 1.09007 * 113.61608 * 89.20047 * 18 17 15 20 20 C 1.53004 * 113.61267 * 220.01339 * 18 17 15 21 21 N 1.46502 * 109.46890 * 184.99871 * 20 18 17 22 22 C 1.34428 * 126.81988 * 125.00824 * 21 20 18 23 23 N 1.30828 * 108.07567 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.83133 * 359.97438 * 23 22 21 25 25 N 1.30712 * 108.94522 * 359.75408 * 24 23 22 26 26 C 1.53776 * 87.08471 * 334.56513 * 18 17 15 27 27 C 1.39834 * 119.99462 * 0.02562 * 11 10 9 28 28 C 1.36560 * 120.00037 * 0.02562 * 27 11 10 29 29 S 1.75866 * 125.11958 * 120.28498 * 4 2 1 30 30 H 0.96697 * 113.99875 * 300.00379 * 1 2 3 31 31 H 1.09005 * 109.47152 * 120.00174 * 2 1 3 32 32 H 1.48505 * 109.99887 * 300.00336 * 3 2 1 33 33 H 1.48503 * 109.99853 * 61.31695 * 3 2 1 34 34 H 1.08000 * 122.45326 * 0.02562 * 5 4 2 35 35 H 1.08000 * 122.64856 * 180.02562 * 6 5 4 36 36 H 1.08002 * 119.99516 * 359.97167 * 9 8 7 37 37 H 1.08005 * 120.00041 * 180.02562 * 10 9 8 38 38 H 0.96998 * 119.99534 * 359.97438 * 14 12 11 39 39 H 1.09010 * 113.60875 * 254.52659 * 17 15 14 40 40 H 1.08996 * 113.61762 * 25.42667 * 17 15 14 41 41 H 1.08995 * 109.47664 * 305.00288 * 20 18 17 42 42 H 1.09003 * 109.46732 * 65.00233 * 20 18 17 43 43 H 1.08004 * 125.95991 * 359.97438 * 22 21 20 44 44 H 1.07998 * 125.52774 * 179.97438 * 24 23 22 45 45 H 1.08992 * 113.61345 * 270.88893 * 26 18 17 46 46 H 1.09002 * 113.61455 * 139.98042 * 26 18 17 47 47 H 1.08001 * 119.99876 * 179.97438 * 27 11 10 48 48 H 1.08000 * 120.00110 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6720 -1.9847 -1.5430 6 6 2.2380 -2.4244 -2.7198 7 6 2.9675 -1.4973 -3.3758 8 6 3.6737 -1.7157 -4.6529 9 6 4.4004 -0.6738 -5.2371 10 6 5.0543 -0.8761 -6.4187 11 6 4.9977 -2.1255 -7.0442 12 6 5.6993 -2.3424 -8.3240 13 8 6.3272 -1.4348 -8.8346 14 7 5.6443 -3.5464 -8.9271 15 6 6.3414 -3.7619 -10.1975 16 1 7.1704 -3.0704 -10.3481 17 6 6.7108 -5.2322 -10.4557 18 6 6.3123 -4.9930 -11.9215 19 1 7.1334 -4.6393 -12.5452 20 6 5.5514 -6.1630 -12.5485 21 7 5.3226 -5.8911 -13.9698 22 6 5.6699 -6.6740 -15.0059 23 7 5.2911 -6.0801 -16.1083 24 6 4.7006 -4.9216 -15.8177 25 7 4.6908 -4.7640 -14.5201 26 6 5.3981 -3.8684 -11.4074 27 6 4.2709 -3.1675 -6.4599 28 6 3.6161 -2.9648 -5.2788 29 16 2.9525 0.0093 -2.4682 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5139 0.8900 32 1 1.5616 2.4679 -1.2085 33 1 1.5880 2.4585 1.2242 34 1 1.0637 -2.6223 -0.9186 35 1 2.1075 -3.4310 -3.0887 36 1 4.4444 0.2911 -4.7538 37 1 5.6160 -0.0714 -6.8698 38 1 5.1438 -4.2705 -8.5196 39 1 7.7712 -5.4460 -10.3209 40 1 6.0657 -5.9420 -9.9380 41 1 6.1375 -7.0759 -12.4430 42 1 4.5934 -6.2858 -12.0433 43 1 6.1738 -7.6270 -14.9398 44 1 4.2928 -4.2271 -16.5373 45 1 4.3941 -4.2054 -11.1498 46 1 5.3985 -2.9813 -12.0408 47 1 4.2268 -4.1323 -6.9431 48 1 3.0545 -3.7694 -4.8277 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:49 Heat of formation + Delta-G solvation = 122.163773 kcal Electronic energy + Delta-G solvation = -31709.047954 eV Core-core repulsion = 27246.369234 eV Total energy + Delta-G solvation = -4462.678720 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.125 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.96193 -41.57555 -40.39499 -39.46006 -38.84986 -37.52733 -35.54389 -34.29649 -33.34803 -32.22171 -32.13964 -30.62071 -29.03649 -27.26800 -26.72049 -25.15028 -24.22452 -23.82771 -23.25919 -22.84322 -22.33066 -21.63730 -20.77799 -20.09617 -19.01318 -18.70221 -18.32907 -18.29102 -17.42145 -16.99774 -16.75836 -16.33490 -16.26035 -16.13590 -15.95798 -15.69500 -15.60130 -15.41647 -15.02126 -14.96298 -14.62107 -14.50106 -14.43012 -14.19253 -14.09863 -13.65264 -13.46548 -13.41144 -13.29652 -13.14216 -13.08703 -12.86223 -12.75239 -12.39828 -12.22882 -12.17117 -11.91233 -11.60639 -11.41535 -11.09856 -10.96010 -10.84079 -10.77663 -10.55139 -10.51064 -10.19264 -10.10780 -9.55860 -9.02128 -5.10985 -0.89223 0.23407 0.33726 0.37669 0.72715 0.75528 1.16749 1.48264 1.50619 1.56335 1.83421 1.95146 2.02728 2.07537 2.82155 3.30396 3.31972 3.40958 3.45270 3.55681 3.62323 3.69213 3.72538 3.77057 3.77773 3.84525 3.95163 4.13886 4.19144 4.21402 4.31453 4.35213 4.36893 4.46413 4.55393 4.59014 4.62464 4.71927 4.72977 4.81615 4.91613 4.97940 5.01603 5.05496 5.09844 5.16071 5.22497 5.28559 5.32337 5.35920 5.47356 5.48538 5.53049 5.73256 5.98053 6.45539 6.51416 7.12402 7.15708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.036 4.036 3 Si 0.702 3.298 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.161 4.161 8 C 0.007 3.993 9 C -0.130 4.130 10 C -0.066 4.066 11 C -0.152 4.152 12 C 0.556 3.444 13 O -0.585 6.585 14 N -0.698 5.698 15 C 0.112 3.888 16 H 0.088 0.912 17 C -0.111 4.111 18 C -0.112 4.112 19 H 0.083 0.917 20 C 0.135 3.865 21 N -0.379 5.379 22 C 0.256 3.744 23 N -0.587 5.587 24 C 0.183 3.817 25 N -0.345 5.345 26 C -0.137 4.137 27 C -0.065 4.065 28 C -0.108 4.108 29 S 0.118 5.882 30 H 0.399 0.601 31 H 0.113 0.887 32 H -0.286 1.286 33 H -0.252 1.252 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.101 0.899 43 H 0.261 0.739 44 H 0.228 0.772 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.167 0.833 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -9.331 7.187 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.148 4.148 3 Si 0.604 3.396 4 C -0.301 4.301 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.278 4.278 8 C 0.005 3.995 9 C -0.149 4.149 10 C -0.085 4.085 11 C -0.155 4.155 12 C 0.345 3.655 13 O -0.467 6.467 14 N -0.349 5.349 15 C 0.007 3.993 16 H 0.107 0.893 17 C -0.149 4.149 18 C -0.131 4.131 19 H 0.101 0.899 20 C 0.014 3.986 21 N -0.169 5.169 22 C -0.040 4.040 23 N -0.315 5.315 24 C -0.120 4.120 25 N -0.173 5.173 26 C -0.175 4.175 27 C -0.084 4.084 28 C -0.127 4.127 29 S 0.385 5.615 30 H 0.250 0.750 31 H 0.131 0.869 32 H -0.212 1.212 33 H -0.176 1.176 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.257 0.743 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.119 0.881 43 H 0.276 0.724 44 H 0.244 0.756 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.184 0.816 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.512 -6.233 6.254 8.958 hybrid contribution -1.849 -0.914 0.617 2.153 sum -0.337 -7.147 6.871 9.920 Atomic orbital electron populations 1.86554 1.17888 1.80457 1.51403 1.24102 0.84187 1.09908 0.96602 0.94596 0.91082 0.74305 0.79595 1.24080 1.06479 0.98322 1.01209 1.20208 1.01115 0.95019 0.97928 1.20639 0.97621 1.01402 0.94772 1.23164 1.06980 0.97980 0.99673 1.18465 0.94988 0.94734 0.91302 1.21017 0.98438 0.99321 0.96107 1.20935 0.96690 0.96638 0.94193 1.20035 1.03227 0.96233 0.96023 1.18557 0.79625 0.82790 0.84558 1.90784 1.44784 1.43949 1.67160 1.45741 1.52953 1.12745 1.23481 1.22550 0.95599 0.98960 0.82217 0.89339 1.23306 1.04117 0.94302 0.93204 1.22495 0.98447 0.95577 0.96626 0.89869 1.22238 1.02642 0.99784 0.73916 1.50782 1.42390 1.14423 1.09334 1.26926 0.96281 0.99089 0.81659 1.70535 1.21008 1.09602 1.30344 1.26414 0.97961 0.95242 0.92384 1.78015 1.20189 1.08037 1.11103 1.23447 0.99078 0.98698 0.96319 1.21275 0.93603 0.98685 0.94789 1.21215 0.99906 0.96304 0.95315 1.84202 1.48687 1.13562 1.15058 0.74969 0.86935 1.21224 1.17606 0.82648 0.81206 0.85057 0.85592 0.74314 0.89000 0.85831 0.83623 0.88051 0.72386 0.75593 0.88736 0.93931 0.81572 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.39 12.83 -148.98 -1.91 -2.30 16 2 C -0.04 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.70 -0.67 30.96 68.60 2.12 1.46 16 4 C -0.18 -0.30 5.76 24.66 0.14 -0.16 16 5 C -0.11 -0.02 10.00 21.14 0.21 0.19 16 6 C -0.11 0.14 9.64 21.41 0.21 0.35 16 7 C -0.16 -0.22 6.37 23.98 0.15 -0.07 16 8 C 0.01 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.13 -0.40 9.54 22.26 0.21 -0.19 16 10 C -0.07 -0.34 9.53 22.26 0.21 -0.12 16 11 C -0.15 -0.39 5.88 -20.05 -0.12 -0.51 16 12 C 0.56 3.21 7.76 86.70 0.67 3.88 16 13 O -0.59 -9.13 15.93 -4.02 -0.06 -9.19 16 14 N -0.70 1.80 5.30 -443.17 -2.35 -0.55 16 15 C 0.11 -0.21 4.24 45.52 0.19 -0.02 16 16 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 17 C -0.11 1.16 7.39 31.12 0.23 1.39 16 18 C -0.11 0.71 3.86 -10.27 -0.04 0.67 16 19 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 20 C 0.13 -1.27 6.39 86.38 0.55 -0.72 16 21 N -0.38 0.37 3.69 -352.05 -1.30 -0.93 16 22 C 0.26 -0.41 12.63 180.36 2.28 1.87 16 23 N -0.59 -3.57 11.19 -204.01 -2.28 -5.85 16 24 C 0.18 1.09 13.03 180.77 2.36 3.44 16 25 N -0.35 -2.17 12.58 -61.25 -0.77 -2.94 16 26 C -0.14 0.16 7.43 31.12 0.23 0.39 16 27 C -0.07 0.30 9.48 22.26 0.21 0.51 16 28 C -0.11 0.42 9.48 22.26 0.21 0.63 16 29 S 0.12 0.26 19.46 -56.49 -1.10 -0.84 16 30 H 0.40 -3.05 8.74 -74.06 -0.65 -3.70 16 31 H 0.11 -0.73 7.96 -2.38 -0.02 -0.75 16 32 H -0.29 -2.05 7.11 99.48 0.71 -1.34 16 33 H -0.25 -0.29 7.11 99.48 0.71 0.42 16 34 H 0.16 -0.38 8.06 -2.91 -0.02 -0.40 16 35 H 0.17 -1.21 6.88 -2.91 -0.02 -1.23 16 36 H 0.13 0.23 7.26 -2.91 -0.02 0.21 16 37 H 0.13 0.90 7.64 -2.91 -0.02 0.88 16 38 H 0.42 -4.34 6.74 -92.71 -0.62 -4.96 16 39 H 0.09 -1.00 8.14 -2.38 -0.02 -1.02 16 40 H 0.12 -2.00 8.08 -2.39 -0.02 -2.02 16 41 H 0.15 -2.52 8.09 -2.39 -0.02 -2.54 16 42 H 0.10 -1.10 7.84 -2.39 -0.02 -1.12 16 43 H 0.26 -3.19 8.06 -2.91 -0.02 -3.21 16 44 H 0.23 0.18 8.06 -2.91 -0.02 0.15 16 45 H 0.09 -0.26 7.89 -2.39 -0.02 -0.28 16 46 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.17 -2.13 6.38 -2.91 -0.02 -2.15 16 48 H 0.16 -1.61 6.74 -2.91 -0.02 -1.63 16 Total: 0.00 -33.91 419.70 0.15 -33.76 By element: Atomic # 1 Polarization: -24.10 SS G_CDS: -0.20 Total: -24.30 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 8.01 Total: 11.68 kcal Atomic # 7 Polarization: -3.56 SS G_CDS: -6.70 Total: -10.26 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.98 Total: -11.50 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.12 Total: 1.46 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.10 Total: -0.84 kcal Total: -33.91 0.15 -33.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.921 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds