Wall clock time and date at job start Sun Mar 7 2021 00:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37787 * 119.85094 * 2 1 4 4 C 1.39703 * 119.90757 * 180.30325 * 3 2 1 5 5 C 1.47539 * 120.19056 * 179.69778 * 4 3 2 6 6 O 1.21597 * 119.99766 * 179.72219 * 5 4 3 7 7 N 1.34775 * 120.00126 * 359.71767 * 5 4 3 8 8 C 1.46501 * 119.99930 * 180.02562 * 7 5 4 9 9 H 1.08995 * 112.85197 * 336.19831 * 8 7 5 10 10 C 1.53782 * 113.68683 * 107.46689 * 8 7 5 11 11 C 1.53776 * 87.08009 * 139.99195 * 10 8 7 12 12 H 1.09003 * 113.69332 * 89.12939 * 11 10 8 13 13 C 1.53006 * 113.61554 * 220.01694 * 11 10 8 14 14 N 1.46504 * 109.46883 * 272.49982 * 13 11 10 15 15 C 1.34430 * 126.82120 * 124.71125 * 14 13 11 16 16 N 1.30835 * 108.07516 * 179.88705 * 15 14 13 17 17 C 1.33237 * 109.82650 * 0.38078 * 16 15 14 18 18 N 1.30708 * 108.95196 * 359.76213 * 17 16 15 19 19 C 1.53779 * 113.61412 * 205.00118 * 8 7 5 20 20 C 1.40140 * 119.61702 * 359.41235 * 4 3 2 21 21 O 1.35656 * 120.14976 * 180.30333 * 20 4 3 22 22 C 1.38711 * 119.70086 * 0.28815 * 20 4 3 23 23 C 1.50697 * 119.95999 * 180.02562 * 22 20 4 24 24 O 1.42895 * 109.46907 * 284.99726 * 23 22 20 25 25 Si 1.86300 * 109.47150 * 164.99510 * 23 22 20 26 26 C 1.38059 * 120.08110 * 359.97438 * 22 20 4 27 27 H 1.09008 * 109.47303 * 270.30444 * 1 2 3 28 28 H 1.08991 * 109.47284 * 30.30282 * 1 2 3 29 29 H 1.08997 * 109.47267 * 150.30719 * 1 2 3 30 30 H 1.07996 * 120.04569 * 0.02562 * 3 2 1 31 31 H 0.96997 * 119.99914 * 0.02562 * 7 5 4 32 32 H 1.09004 * 113.61971 * 25.44070 * 10 8 7 33 33 H 1.09005 * 113.61642 * 254.54205 * 10 8 7 34 34 H 1.09001 * 109.47002 * 32.49479 * 13 11 10 35 35 H 1.08993 * 109.46955 * 152.49916 * 13 11 10 36 36 H 1.07998 * 125.96346 * 0.03285 * 15 14 13 37 37 H 1.08001 * 125.52307 * 179.79519 * 17 16 15 38 38 H 1.08996 * 113.61570 * 105.38927 * 19 8 7 39 39 H 1.09004 * 113.69064 * 334.49015 * 19 8 7 40 40 H 0.96695 * 114.00403 * 90.00355 * 21 20 4 41 41 H 1.09000 * 109.46779 * 44.99738 * 23 22 20 42 42 H 0.96704 * 113.99701 * 179.97438 * 24 23 22 43 43 H 1.48502 * 109.99913 * 60.00067 * 25 23 22 44 44 H 1.48501 * 109.99937 * 181.31807 * 25 23 22 45 45 H 1.07998 * 119.80351 * 180.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 -0.0064 5 6 4.3305 2.4725 -0.0132 6 8 5.5465 2.4696 -0.0136 7 7 3.6593 3.6412 -0.0189 8 6 4.3948 4.9082 -0.0262 9 1 5.4024 4.8151 0.3789 10 6 4.3385 5.6475 -1.3735 11 6 4.1908 6.9471 -0.5647 12 1 5.1419 7.4126 -0.3063 13 6 3.1908 7.9349 -1.1691 14 7 3.8749 8.7864 -2.1455 15 6 3.5368 8.9666 -3.4341 16 7 4.3930 9.8011 -3.9654 17 6 5.2928 10.1671 -3.0535 18 7 5.0176 9.5719 -1.9228 19 6 3.6001 6.0852 0.5636 20 6 4.2837 -0.0211 -0.0003 21 8 5.6402 -0.0323 -0.0002 22 6 3.5771 -1.2148 0.0060 23 6 4.3172 -2.5274 0.0131 24 8 4.8551 -2.7780 -1.2868 25 14 3.1443 -3.8992 0.4750 26 6 2.1965 -1.2017 0.0067 27 1 -0.3634 0.0055 1.0277 28 1 -0.3633 0.8872 -0.5185 29 1 -0.3633 -0.8927 -0.5090 30 1 1.6512 2.1294 0.0004 31 1 2.6894 3.6434 -0.0183 32 1 3.4597 5.4021 -1.9699 33 1 5.2666 5.5902 -1.9422 34 1 2.3907 7.3847 -1.6644 35 1 2.7696 8.5552 -0.3781 36 1 2.7026 8.5051 -3.9414 37 1 6.1158 10.8460 -3.2213 38 1 3.9321 6.3812 1.5586 39 1 2.5192 5.9607 0.4975 40 1 6.0335 -0.0312 0.8831 41 1 5.1285 -2.4830 0.7397 42 1 5.3461 -3.6083 -1.3559 43 1 2.0335 -3.9701 -0.5079 44 1 3.8691 -5.1946 0.5167 45 1 1.6509 -2.1337 0.0120 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:07:57 Heat of formation + Delta-G solvation = 40.725159 kcal Electronic energy + Delta-G solvation = -29403.881883 eV Core-core repulsion = 25198.279462 eV Total energy + Delta-G solvation = -4205.602421 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.98818 -41.82126 -40.71438 -39.30155 -38.07120 -37.75031 -35.48475 -34.24496 -33.16401 -32.57440 -32.16582 -29.06539 -27.52803 -26.79005 -26.76844 -25.72260 -23.94118 -22.94255 -22.36692 -21.82630 -21.52947 -20.51154 -19.55592 -18.63644 -18.45159 -18.24237 -17.72718 -17.01768 -16.80717 -16.53247 -16.25531 -16.05761 -15.90514 -15.75390 -15.42379 -15.14118 -14.96713 -14.94461 -14.44937 -14.36386 -14.08549 -13.80407 -13.66079 -13.48724 -13.22365 -13.11165 -12.98694 -12.73745 -12.63215 -12.40149 -12.37256 -11.92334 -11.86279 -11.72070 -11.54333 -10.99991 -10.92677 -10.79441 -10.53815 -10.47313 -10.25764 -9.99366 -9.49563 -4.97833 -0.35439 0.07252 0.70007 1.22646 1.45657 1.55717 1.68876 1.89070 2.00694 2.05639 2.53488 3.13990 3.32016 3.35783 3.44872 3.46963 3.53593 3.57553 3.65263 3.76722 3.82376 3.88521 4.08735 4.13508 4.15896 4.17541 4.29858 4.40028 4.50416 4.51657 4.62512 4.67297 4.73489 4.77104 4.81935 4.91946 4.92767 4.98951 5.01809 5.16302 5.21164 5.25631 5.30994 5.42277 5.45223 5.52251 5.68685 5.95677 6.46894 6.53258 6.72732 7.12991 7.16094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.057 4.057 4 C -0.181 4.181 5 C 0.556 3.444 6 O -0.569 6.569 7 N -0.699 5.699 8 C 0.117 3.883 9 H 0.085 0.915 10 C -0.144 4.144 11 C -0.115 4.115 12 H 0.079 0.921 13 C 0.136 3.864 14 N -0.377 5.377 15 C 0.256 3.744 16 N -0.586 5.586 17 C 0.185 3.815 18 N -0.351 5.351 19 C -0.112 4.112 20 C 0.161 3.839 21 O -0.492 6.492 22 C -0.121 4.121 23 C -0.089 4.089 24 O -0.558 6.558 25 Si 0.782 3.218 26 C -0.081 4.081 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.259 0.741 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.402 0.598 41 H 0.083 0.917 42 H 0.392 0.608 43 H -0.285 1.285 44 H -0.288 1.288 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.381 -2.062 6.045 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.076 4.076 4 C -0.185 4.185 5 C 0.344 3.656 6 O -0.448 6.448 7 N -0.351 5.351 8 C 0.012 3.988 9 H 0.103 0.897 10 C -0.183 4.183 11 C -0.135 4.135 12 H 0.098 0.902 13 C 0.016 3.984 14 N -0.168 5.168 15 C -0.040 4.040 16 N -0.314 5.314 17 C -0.117 4.117 18 N -0.179 5.179 19 C -0.151 4.151 20 C 0.115 3.885 21 O -0.304 6.304 22 C -0.121 4.121 23 C -0.196 4.196 24 O -0.368 6.368 25 Si 0.685 3.315 26 C -0.099 4.099 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.256 0.744 32 H 0.129 0.871 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.275 0.725 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.261 0.739 41 H 0.101 0.899 42 H 0.242 0.758 43 H -0.212 1.212 44 H -0.215 1.215 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.850 -2.063 5.489 12.334 hybrid contribution 1.505 -0.484 -0.625 1.700 sum -9.346 -2.547 4.864 10.839 Atomic orbital electron populations 1.20918 0.87776 1.04290 1.04262 1.20130 0.98249 0.91619 0.99467 1.21445 0.90766 0.99937 0.95403 1.20412 0.95210 0.92402 1.10456 1.18370 0.86883 0.84603 0.75739 1.90814 1.15293 1.87981 1.50743 1.45704 1.10785 1.04205 1.74414 1.22415 0.97106 0.81734 0.97532 0.89684 1.23597 1.02649 0.95147 0.96927 1.22523 0.99699 0.93616 0.97657 0.90217 1.22239 0.93836 0.90887 0.91482 1.50758 1.20990 1.34314 1.10739 1.26882 0.99484 0.94659 0.82950 1.70538 1.07892 1.18444 1.34559 1.26433 0.99589 0.99559 0.86159 1.77949 1.03191 1.12059 1.24727 1.23310 1.02077 0.91501 0.98181 1.18576 0.83507 0.90953 0.95502 1.84759 1.15454 1.96080 1.34139 1.19788 0.94225 0.93435 1.04683 1.25086 1.04466 1.02165 0.87856 1.86597 1.73941 1.45621 1.30595 0.94157 0.76717 0.73385 0.87214 1.21376 0.92247 0.99836 0.96445 0.88875 0.89524 0.91025 0.81497 0.74365 0.87121 0.94150 0.83874 0.87802 0.72539 0.75340 0.89766 0.85395 0.73906 0.89874 0.75795 1.21186 1.21538 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.19 10.00 71.24 0.71 1.90 16 2 C -0.09 0.41 5.87 -19.90 -0.12 0.30 16 3 C -0.06 0.25 9.18 22.52 0.21 0.46 16 4 C -0.18 -0.63 5.89 -20.01 -0.12 -0.75 16 5 C 0.56 3.43 7.76 86.70 0.67 4.10 16 6 O -0.57 -9.03 14.76 16.90 0.25 -8.78 16 7 N -0.70 2.07 5.31 -443.19 -2.35 -0.28 16 8 C 0.12 -0.24 4.24 45.52 0.19 -0.04 16 9 H 0.08 0.43 7.46 -2.39 -0.02 0.42 16 10 C -0.14 0.43 7.43 31.12 0.23 0.66 16 11 C -0.12 0.62 3.88 -10.27 -0.04 0.58 16 12 H 0.08 0.10 8.00 -2.39 -0.02 0.08 16 13 C 0.14 -1.18 6.39 86.38 0.55 -0.63 16 14 N -0.38 0.05 3.69 -352.05 -1.30 -1.25 16 15 C 0.26 -0.18 12.63 180.36 2.28 2.10 16 16 N -0.59 -3.96 11.19 -204.01 -2.28 -6.24 16 17 C 0.19 1.19 13.03 180.77 2.36 3.54 16 18 N -0.35 -2.44 12.45 -61.25 -0.76 -3.20 16 19 C -0.11 1.07 7.39 31.12 0.23 1.30 16 20 C 0.16 1.14 6.69 22.84 0.15 1.29 16 21 O -0.49 -5.08 10.91 -68.80 -0.75 -5.83 16 22 C -0.12 -0.42 5.30 -19.79 -0.10 -0.53 16 23 C -0.09 -0.14 2.37 71.24 0.17 0.03 16 24 O -0.56 -3.59 12.86 -148.98 -1.92 -5.50 16 25 Si 0.78 -2.24 30.19 68.60 2.07 -0.17 16 26 C -0.08 0.08 8.30 22.30 0.19 0.26 16 27 H 0.09 -1.18 8.14 -2.38 -0.02 -1.20 16 28 H 0.09 -1.11 8.08 -2.39 -0.02 -1.13 16 29 H 0.07 -0.69 8.08 -2.39 -0.02 -0.71 16 30 H 0.17 -2.13 6.40 -2.91 -0.02 -2.15 16 31 H 0.42 -4.61 6.76 -92.71 -0.63 -5.24 16 32 H 0.11 -0.85 7.90 -2.38 -0.02 -0.87 16 33 H 0.04 0.17 8.14 -2.38 -0.02 0.15 16 34 H 0.14 -2.39 7.79 -2.39 -0.02 -2.41 16 35 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 -2.91 8.06 -2.91 -0.02 -2.93 16 37 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.13 -2.09 8.08 -2.39 -0.02 -2.11 16 40 H 0.40 1.13 9.06 -74.06 -0.67 0.46 16 41 H 0.08 -0.10 7.83 -2.39 -0.02 -0.12 16 42 H 0.39 -0.70 8.74 -74.05 -0.65 -1.35 16 43 H -0.28 -0.62 6.75 99.48 0.67 0.05 16 44 H -0.29 -0.52 7.11 99.48 0.71 0.18 16 45 H 0.15 -0.59 4.87 -2.91 -0.01 -0.61 16 Total: 0.00 -37.45 379.29 -0.36 -37.81 By element: Atomic # 1 Polarization: -20.24 SS G_CDS: -0.88 Total: -21.12 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 7.56 Total: 14.56 kcal Atomic # 7 Polarization: -4.28 SS G_CDS: -6.70 Total: -10.98 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.42 Total: -20.11 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.07 Total: -0.17 kcal Total: -37.45 -0.36 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.537 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds