Wall clock time and date at job start Sun Mar 7 2021 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39206 * 119.92937 * 239.73104 * 4 2 1 6 6 C 1.50693 * 119.96798 * 359.97310 * 5 4 2 7 7 O 1.42906 * 109.46958 * 75.00154 * 6 5 4 8 8 Si 1.86295 * 109.47443 * 195.00119 * 6 5 4 9 9 C 1.37634 * 120.06756 * 179.72322 * 5 4 2 10 10 C 1.39785 * 119.92582 * 0.54888 * 9 5 4 11 11 C 1.47520 * 120.06381 * 179.70489 * 10 9 5 12 12 O 1.21594 * 120.00407 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00129 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00356 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84716 * 334.66440 * 14 13 11 16 16 C 1.53774 * 113.61439 * 105.86177 * 14 13 11 17 17 C 1.53956 * 87.02001 * 139.94982 * 16 14 13 18 18 H 1.09001 * 113.60967 * 89.19753 * 17 16 14 19 19 C 1.53001 * 113.66889 * 220.06307 * 17 16 14 20 20 N 1.46496 * 109.47413 * 272.56160 * 19 17 16 21 21 C 1.34427 * 126.82316 * 124.70764 * 20 19 17 22 22 N 1.30831 * 108.07854 * 179.89562 * 21 20 19 23 23 C 1.33244 * 109.82834 * 0.38174 * 22 21 20 24 24 N 1.30715 * 108.94263 * 359.76397 * 23 22 21 25 25 C 1.53779 * 87.11071 * 334.63876 * 17 16 14 26 26 C 1.39802 * 119.86563 * 359.72133 * 10 9 5 27 27 C 1.37590 * 119.93445 * 0.02562 * 26 10 9 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 34 34 H 1.09001 * 109.47417 * 315.00615 * 6 5 4 35 35 H 0.96698 * 113.99968 * 60.00207 * 7 6 5 36 36 H 1.48507 * 109.99776 * 58.68457 * 8 6 5 37 37 H 1.48502 * 110.00176 * 180.02562 * 8 6 5 38 38 H 1.07995 * 120.03437 * 180.25105 * 9 5 4 39 39 H 0.97002 * 119.99415 * 359.97438 * 13 11 10 40 40 H 1.09000 * 113.61776 * 254.52863 * 16 14 13 41 41 H 1.09001 * 113.61435 * 25.43227 * 16 14 13 42 42 H 1.09004 * 109.46932 * 32.56483 * 19 17 16 43 43 H 1.09002 * 109.46843 * 152.56011 * 19 17 16 44 44 H 1.08003 * 125.96171 * 0.03878 * 21 20 19 45 45 H 1.07994 * 125.52387 * 179.72567 * 23 22 21 46 46 H 1.09003 * 113.61413 * 270.80979 * 25 17 16 47 47 H 1.08999 * 113.61721 * 139.91273 * 25 17 16 48 48 H 1.08004 * 120.03724 * 179.97438 * 26 10 9 49 49 H 1.08001 * 119.97077 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7839 -1.8297 -0.8520 6 6 3.1270 -2.2377 0.5575 7 8 1.9957 -2.8708 1.1589 8 14 4.5611 -3.4265 0.5282 9 6 3.2740 -2.5528 -1.9156 10 6 2.9603 -2.1699 -3.2228 11 6 3.4893 -2.9389 -4.3652 12 8 4.1985 -3.9071 -4.1703 13 7 3.1864 -2.5682 -5.6252 14 6 3.7122 -3.3315 -6.7597 15 1 4.6352 -3.8605 -6.5226 16 6 2.6580 -4.2117 -7.4515 17 6 3.3010 -3.7931 -8.7862 18 1 4.1113 -4.4488 -9.1051 19 6 2.2860 -3.5191 -9.8978 20 7 1.9797 -4.7687 -10.5983 21 6 0.7635 -5.3099 -10.7860 22 7 0.9136 -6.4226 -11.4575 23 6 2.2059 -6.6284 -11.7083 24 7 2.8987 -5.6425 -11.2018 25 6 3.7837 -2.5230 -8.0659 26 6 2.1445 -1.0566 -3.4454 27 6 1.6534 -0.3409 -2.3778 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.6461 1.8947 0.8901 32 1 3.0851 1.3422 0.0005 33 1 1.6460 1.8948 -0.8900 34 1 3.3990 -1.3545 1.1355 35 1 1.6978 -3.6659 0.6962 36 1 5.7344 -2.7910 -0.1235 37 1 4.9089 -3.8370 1.9124 38 1 3.9041 -3.4122 -1.7404 39 1 2.6203 -1.7961 -5.7807 40 1 2.7623 -5.2738 -7.2297 41 1 1.6373 -3.8504 -7.3263 42 1 1.3725 -3.1126 -9.4635 43 1 2.7042 -2.8005 -10.6027 44 1 -0.1741 -4.8969 -10.4442 45 1 2.6147 -7.4732 -12.2427 46 1 3.0713 -1.6991 -8.1090 47 1 4.7955 -2.2237 -8.3394 48 1 1.9007 -0.7580 -4.4543 49 1 1.0234 0.5195 -2.5491 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:01 Heat of formation + Delta-G solvation = 102.458338 kcal Electronic energy + Delta-G solvation = -31238.530615 eV Core-core repulsion = 26977.786189 eV Total energy + Delta-G solvation = -4260.744426 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.179 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.96523 -41.76601 -40.86475 -39.51960 -37.81972 -37.18729 -35.51541 -34.14619 -32.67484 -32.14543 -31.29191 -29.03352 -28.54462 -26.90639 -26.74341 -26.36317 -24.43397 -23.23301 -22.92167 -22.82062 -22.18776 -21.33400 -20.52350 -19.04409 -18.35048 -17.92491 -17.63917 -17.40919 -16.77681 -16.59128 -16.38570 -16.17123 -16.07226 -15.90501 -15.79319 -15.53454 -15.31702 -15.03180 -14.92299 -14.72352 -14.45716 -14.23498 -13.99611 -13.67312 -13.52941 -13.44286 -13.22014 -13.09343 -12.96176 -12.68858 -12.66154 -12.54151 -12.37609 -12.26691 -12.06438 -11.84938 -11.51562 -11.09483 -10.94907 -10.77451 -10.50267 -10.40926 -10.17469 -10.09391 -9.76081 -9.49149 -5.04952 -0.37571 0.16495 0.72388 1.25718 1.47743 1.54048 1.67165 1.87401 2.02921 2.06640 2.64212 2.79930 3.37604 3.47575 3.49590 3.51426 3.55988 3.62208 3.68309 3.78895 3.82905 3.91370 4.05047 4.15047 4.17258 4.19338 4.24825 4.36145 4.40487 4.45272 4.49692 4.53515 4.59606 4.66255 4.70435 4.72862 4.80693 4.82056 4.93333 4.95262 5.00496 5.03595 5.04238 5.13105 5.20989 5.27123 5.33306 5.47309 5.52309 5.58519 5.85516 5.98155 6.29896 6.47265 6.80828 7.14442 7.15372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.525 5.525 3 C 0.026 3.974 4 C 0.137 3.863 5 C -0.118 4.118 6 C -0.036 4.036 7 O -0.541 6.541 8 Si 0.732 3.268 9 C -0.060 4.060 10 C -0.148 4.148 11 C 0.557 3.443 12 O -0.578 6.578 13 N -0.698 5.698 14 C 0.117 3.883 15 H 0.087 0.913 16 C -0.141 4.141 17 C -0.117 4.117 18 H 0.079 0.921 19 C 0.136 3.864 20 N -0.377 5.377 21 C 0.257 3.743 22 N -0.586 5.586 23 C 0.185 3.815 24 N -0.351 5.351 25 C -0.116 4.116 26 C -0.053 4.053 27 C -0.157 4.157 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.389 0.611 36 H -0.296 1.296 37 H -0.290 1.290 38 H 0.137 0.863 39 H 0.418 0.582 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.144 0.856 43 H 0.101 0.899 44 H 0.260 0.740 45 H 0.230 0.770 46 H 0.126 0.874 47 H 0.081 0.919 48 H 0.165 0.835 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 7.858 -2.872 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.247 5.247 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.119 4.119 6 C -0.147 4.147 7 O -0.348 6.348 8 Si 0.640 3.360 9 C -0.079 4.079 10 C -0.152 4.152 11 C 0.346 3.654 12 O -0.459 6.459 13 N -0.349 5.349 14 C 0.012 3.988 15 H 0.105 0.895 16 C -0.179 4.179 17 C -0.136 4.136 18 H 0.098 0.902 19 C 0.015 3.985 20 N -0.168 5.168 21 C -0.039 4.039 22 N -0.314 5.314 23 C -0.117 4.117 24 N -0.180 5.180 25 C -0.154 4.154 26 C -0.072 4.072 27 C -0.177 4.177 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.238 0.762 36 H -0.223 1.223 37 H -0.217 1.217 38 H 0.155 0.845 39 H 0.257 0.743 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.119 0.881 44 H 0.275 0.725 45 H 0.246 0.754 46 H 0.145 0.855 47 H 0.100 0.900 48 H 0.182 0.818 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.280 7.246 -1.735 8.593 hybrid contribution -0.215 0.912 -0.440 1.036 sum -4.495 8.159 -2.176 9.566 Atomic orbital electron populations 1.22435 0.84232 1.02881 1.01733 1.59354 1.09817 1.14670 1.40819 1.22513 1.00476 0.86745 1.02325 1.18988 0.94063 0.93050 0.89691 1.20234 0.99580 0.96398 0.95706 1.24656 0.97186 1.01715 0.91186 1.86521 1.48105 1.45504 1.54662 0.94248 0.76184 0.86050 0.79554 1.21077 0.97103 0.98274 0.91397 1.19860 1.03409 0.99084 0.92799 1.18451 0.79523 0.83417 0.84022 1.90802 1.39552 1.29566 1.85996 1.45725 1.52124 1.32889 1.04199 1.22436 0.97586 0.94352 0.84467 0.89502 1.23600 1.00235 0.99507 0.94580 1.22558 0.98504 0.99337 0.93244 0.90247 1.22229 1.02147 0.80625 0.93461 1.50749 1.04936 1.19843 1.41269 1.26886 0.92664 0.89998 0.94353 1.70540 1.20043 1.19015 1.21831 1.26428 0.87725 0.98692 0.98880 1.77953 1.17489 1.04799 1.17735 1.23318 1.03962 0.96661 0.91475 1.21454 0.93183 0.91835 1.00769 1.21865 1.01973 1.01639 0.92192 0.91484 0.93775 0.90319 0.89975 0.91929 0.93607 0.87579 0.76249 1.22284 1.21697 0.84533 0.74290 0.93623 0.86943 0.83809 0.88113 0.72488 0.75391 0.85546 0.90047 0.81752 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.11 9.34 127.69 1.19 1.09 16 2 N -0.53 0.21 4.20 -745.08 -3.13 -2.92 16 3 C 0.03 -0.08 9.32 127.69 1.19 1.11 16 4 C 0.14 -0.07 4.69 38.47 0.18 0.11 16 5 C -0.12 -0.17 5.27 -19.78 -0.10 -0.27 16 6 C -0.04 -0.09 2.33 71.23 0.17 0.07 16 7 O -0.54 -1.26 12.88 -148.98 -1.92 -3.18 16 8 Si 0.73 2.43 29.92 68.60 2.05 4.48 16 9 C -0.06 -0.11 8.19 22.50 0.18 0.07 16 10 C -0.15 0.09 5.88 -20.08 -0.12 -0.03 16 11 C 0.56 1.26 7.76 86.69 0.67 1.93 16 12 O -0.58 -6.72 15.95 -4.01 -0.06 -6.78 16 13 N -0.70 4.05 5.31 -443.22 -2.35 1.69 16 14 C 0.12 -0.51 4.21 45.51 0.19 -0.32 16 15 H 0.09 0.22 7.50 -2.39 -0.02 0.21 16 16 C -0.14 0.80 7.45 31.18 0.23 1.03 16 17 C -0.12 0.81 3.88 -10.21 -0.04 0.77 16 18 H 0.08 -0.01 8.00 -2.39 -0.02 -0.03 16 19 C 0.14 -1.34 6.39 86.38 0.55 -0.79 16 20 N -0.38 0.53 3.69 -352.06 -1.30 -0.77 16 21 C 0.26 -0.53 12.63 180.36 2.28 1.75 16 22 N -0.59 -3.24 11.19 -204.00 -2.28 -5.52 16 23 C 0.19 0.98 13.03 180.76 2.36 3.34 16 24 N -0.35 -2.05 12.45 -61.25 -0.76 -2.81 16 25 C -0.12 1.24 7.39 31.12 0.23 1.47 16 26 C -0.05 0.36 9.53 22.50 0.21 0.58 16 27 C -0.16 0.81 8.57 22.36 0.19 1.00 16 28 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.04 -0.27 7.10 -2.39 -0.02 -0.29 16 30 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 31 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 32 H 0.06 -0.11 8.12 -2.39 -0.02 -0.13 16 33 H 0.05 -0.27 7.45 -2.39 -0.02 -0.29 16 34 H 0.11 0.52 7.78 -2.39 -0.02 0.50 16 35 H 0.39 -2.03 8.70 -74.06 -0.64 -2.68 16 36 H -0.30 -2.85 7.11 99.48 0.71 -2.14 16 37 H -0.29 -2.78 7.11 99.48 0.71 -2.07 16 38 H 0.14 0.37 4.70 -2.91 -0.01 0.36 16 39 H 0.42 -5.67 6.73 -92.71 -0.62 -6.29 16 40 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.11 -1.20 7.90 -2.39 -0.02 -1.22 16 42 H 0.14 -2.60 7.80 -2.39 -0.02 -2.62 16 43 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 44 H 0.26 -3.29 8.06 -2.91 -0.02 -3.31 16 45 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16 46 H 0.13 -2.19 8.07 -2.39 -0.02 -2.21 16 47 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.17 -2.46 6.39 -2.91 -0.02 -2.48 16 49 H 0.15 -1.37 7.01 -2.91 -0.02 -1.39 16 Total: 0.00 -31.25 403.87 -0.43 -31.68 By element: Atomic # 1 Polarization: -28.55 SS G_CDS: -0.24 Total: -28.78 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 9.57 Total: 12.92 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -9.83 Total: -10.33 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.98 Total: -9.96 kcal Atomic # 14 Polarization: 2.43 SS G_CDS: 2.05 Total: 4.48 kcal Total: -31.25 -0.43 -31.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.136 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds