Wall clock time and date at job start Sun Mar 7 2021 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.46598 * 2 1 4 4 C 1.50699 * 109.47197 * 240.00039 * 2 1 3 5 5 C 1.34177 * 125.43813 * 300.00494 * 4 2 1 6 6 C 1.47019 * 105.95224 * 179.97438 * 5 4 2 7 7 C 1.47380 * 127.19149 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00298 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00178 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00001 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.91124 * 23.74936 * 10 9 7 12 12 C 1.53780 * 113.61538 * 155.00316 * 10 9 7 13 13 C 1.53780 * 87.08488 * 139.97654 * 12 10 9 14 14 H 1.09003 * 113.61137 * 89.20025 * 13 12 10 15 15 C 1.52997 * 113.61900 * 220.01941 * 13 12 10 16 16 N 1.46505 * 109.47212 * 184.99939 * 15 13 12 17 17 C 1.34431 * 126.82034 * 124.70925 * 16 15 13 18 18 N 1.30831 * 108.07452 * 179.89522 * 17 16 15 19 19 C 1.33242 * 109.83134 * 0.38128 * 18 17 16 20 20 N 1.30720 * 108.94259 * 359.76538 * 19 18 17 21 21 C 1.53787 * 87.08169 * 334.56869 * 13 12 10 22 22 C 1.36419 * 105.61919 * 0.21859 * 6 5 4 23 23 O 1.33654 * 108.38918 * 359.63513 * 22 6 5 24 24 H 0.96705 * 114.00133 * 299.99552 * 1 2 3 25 25 H 1.09000 * 109.47246 * 120.00110 * 2 1 3 26 26 H 1.48503 * 109.99713 * 178.68212 * 3 2 1 27 27 H 1.48493 * 110.00376 * 299.99963 * 3 2 1 28 28 H 1.07999 * 127.02205 * 0.02562 * 5 4 2 29 29 H 0.97000 * 119.99784 * 0.02562 * 9 7 6 30 30 H 1.09004 * 113.61321 * 25.42937 * 12 10 9 31 31 H 1.09001 * 113.69385 * 254.53995 * 12 10 9 32 32 H 1.09002 * 109.47153 * 64.99931 * 15 13 12 33 33 H 1.09001 * 109.46832 * 305.00122 * 15 13 12 34 34 H 1.08004 * 125.96211 * 0.03907 * 17 16 15 35 35 H 1.07997 * 125.52973 * 179.80122 * 19 18 17 36 36 H 1.08998 * 113.61477 * 139.97815 * 21 13 12 37 37 H 1.08992 * 113.61461 * 270.88344 * 21 13 12 38 38 H 1.07998 * 125.80283 * 179.75712 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6753 -1.9881 -1.5502 6 6 2.3680 -2.2326 -2.8237 7 6 2.3970 -3.4879 -3.5954 8 8 1.8015 -4.4665 -3.1873 9 7 3.0828 -3.5510 -4.7539 10 6 3.1112 -4.7986 -5.5212 11 1 2.2594 -5.4455 -5.3111 12 6 3.3727 -4.5927 -7.0226 13 6 4.2687 -5.8408 -6.9576 14 1 3.7335 -6.7724 -7.1416 15 6 5.5506 -5.7188 -7.7839 16 7 6.2735 -6.9928 -7.7547 17 6 6.6695 -7.7188 -8.8145 18 7 7.2834 -8.7850 -8.3695 19 6 7.2918 -8.7788 -7.0371 20 7 6.6849 -7.7011 -6.6140 21 6 4.4653 -5.5255 -5.4653 22 6 2.9829 -1.0564 -3.1390 23 8 2.7057 -0.1658 -2.1818 24 1 -0.3934 0.4417 0.7651 25 1 1.7924 -0.5138 0.8900 26 1 3.5345 1.7704 0.0321 27 1 1.5613 2.4679 -1.2084 28 1 1.0810 -2.6927 -0.9874 29 1 3.5576 -2.7704 -5.0797 30 1 3.9169 -3.6758 -7.2492 31 1 2.4864 -4.7232 -7.6435 32 1 6.1801 -4.9341 -7.3642 33 1 5.2964 -5.4687 -8.8139 34 1 6.5109 -7.4650 -9.8522 35 1 7.7295 -9.5403 -6.4087 36 1 4.4602 -6.4097 -4.8279 37 1 5.3081 -4.8638 -5.2662 38 1 3.5888 -0.8751 -4.0145 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13456056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:13 Heat of formation + Delta-G solvation = 74.612479 kcal Electronic energy + Delta-G solvation = -23650.256313 eV Core-core repulsion = 19885.424735 eV Total energy + Delta-G solvation = -3764.831578 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.88114 -42.98495 -41.20110 -39.51156 -37.92006 -35.56382 -34.46098 -33.74471 -32.16707 -31.95791 -29.10630 -26.79337 -26.74809 -25.66674 -23.86270 -22.86776 -22.42411 -22.21473 -21.37234 -20.46918 -19.01646 -18.67033 -18.33189 -17.61488 -17.33698 -17.21723 -16.75619 -16.23402 -16.10324 -15.93709 -15.76730 -15.66406 -15.09067 -14.90634 -14.52148 -14.32469 -14.22648 -13.82514 -13.72092 -13.49143 -13.21924 -12.91549 -12.72246 -12.28681 -12.17638 -11.96645 -11.47409 -11.27741 -11.10200 -10.98619 -10.80001 -10.58461 -10.53404 -10.20363 -9.86611 -5.04157 0.10361 0.68410 0.70157 1.17525 1.45631 1.49169 1.68817 1.96948 2.00341 2.00932 2.11641 3.26511 3.28091 3.37603 3.41062 3.53421 3.61001 3.67087 3.71837 3.82418 3.91376 4.11236 4.12480 4.23566 4.30698 4.35887 4.40573 4.55898 4.67084 4.68805 4.75179 4.77727 4.93235 5.01285 5.01695 5.10323 5.32797 5.45084 5.47354 5.69221 5.95361 6.38034 6.80680 7.04976 7.13305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.050 4.050 3 Si 0.820 3.180 4 C -0.028 4.028 5 C -0.147 4.147 6 C -0.265 4.265 7 C 0.587 3.413 8 O -0.586 6.586 9 N -0.696 5.696 10 C 0.112 3.888 11 H 0.087 0.913 12 C -0.111 4.111 13 C -0.111 4.111 14 H 0.083 0.917 15 C 0.135 3.865 16 N -0.379 5.379 17 C 0.257 3.743 18 N -0.586 5.586 19 C 0.183 3.817 20 N -0.345 5.345 21 C -0.136 4.136 22 C 0.058 3.942 23 O -0.184 6.184 24 H 0.414 0.586 25 H 0.118 0.882 26 H -0.288 1.288 27 H -0.301 1.301 28 H 0.150 0.850 29 H 0.418 0.582 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.260 0.740 35 H 0.228 0.772 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 8.729 -2.341 9.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.158 4.158 3 Si 0.724 3.276 4 C -0.076 4.076 5 C -0.167 4.167 6 C -0.269 4.269 7 C 0.376 3.624 8 O -0.467 6.467 9 N -0.348 5.348 10 C 0.007 3.993 11 H 0.106 0.894 12 C -0.149 4.149 13 C -0.131 4.131 14 H 0.102 0.898 15 C 0.015 3.985 16 N -0.170 5.170 17 C -0.039 4.039 18 N -0.314 5.314 19 C -0.120 4.120 20 N -0.173 5.173 21 C -0.175 4.175 22 C -0.012 4.012 23 O -0.081 6.081 24 H 0.267 0.733 25 H 0.135 0.865 26 H -0.215 1.215 27 H -0.229 1.229 28 H 0.168 0.832 29 H 0.256 0.744 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.276 0.724 35 H 0.245 0.755 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.365 8.625 -2.431 9.064 hybrid contribution -0.020 -0.976 -0.207 0.998 sum 1.345 7.648 -2.638 8.202 Atomic orbital electron populations 1.86413 1.16358 1.82758 1.52029 1.24163 0.86414 1.12900 0.92319 0.93934 0.76992 0.72759 0.83949 1.21701 0.99394 0.92867 0.93601 1.22594 1.01707 0.96150 0.96227 1.21549 1.09367 0.95960 1.00057 1.17504 0.77906 0.86096 0.80920 1.90787 1.46713 1.38742 1.70484 1.45625 1.52015 1.15521 1.21603 1.22565 0.98280 0.85823 0.92609 0.89447 1.23310 1.00306 0.98347 0.92945 1.22489 0.95927 0.99609 0.95051 0.89847 1.22228 0.91166 0.80339 1.04791 1.50786 1.42649 1.19862 1.03725 1.26927 0.92538 0.87132 0.97346 1.70539 1.25390 1.24133 1.11334 1.26430 0.97762 0.96658 0.91146 1.78016 1.20624 1.09083 1.09615 1.23450 0.97536 0.99912 0.96563 1.25358 0.97884 0.85430 0.92478 1.83727 1.55092 1.40724 1.28530 0.73293 0.86453 1.21477 1.22875 0.83205 0.74391 0.85741 0.89028 0.88014 0.83637 0.72406 0.75543 0.93882 0.88620 0.71898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.36 12.84 -148.98 -1.91 -1.55 16 2 C -0.05 0.05 2.97 71.24 0.21 0.26 16 3 Si 0.82 -2.89 32.08 68.60 2.20 -0.69 16 4 C -0.03 -0.16 6.24 24.76 0.15 -0.01 16 5 C -0.15 -1.33 10.88 23.65 0.26 -1.07 16 6 C -0.26 -1.54 6.31 -18.99 -0.12 -1.66 16 7 C 0.59 4.79 7.81 86.65 0.68 5.47 16 8 O -0.59 -10.91 16.58 -4.08 -0.07 -10.98 16 9 N -0.70 1.12 5.35 -443.33 -2.37 -1.25 16 10 C 0.11 -0.12 4.24 45.52 0.19 0.07 16 11 H 0.09 0.49 7.46 -2.39 -0.02 0.48 16 12 C -0.11 1.10 7.39 31.12 0.23 1.33 16 13 C -0.11 0.67 3.85 -10.27 -0.04 0.63 16 14 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 15 C 0.14 -1.25 6.39 86.38 0.55 -0.69 16 16 N -0.38 0.29 3.69 -352.05 -1.30 -1.01 16 17 C 0.26 -0.36 12.63 180.36 2.28 1.92 16 18 N -0.59 -3.63 11.19 -203.99 -2.28 -5.91 16 19 C 0.18 1.11 13.03 180.76 2.36 3.46 16 20 N -0.35 -2.22 12.57 -61.24 -0.77 -2.99 16 21 C -0.14 0.11 7.43 31.13 0.23 0.34 16 22 C 0.06 -0.09 11.61 67.40 0.78 0.70 16 23 O -0.18 -0.73 8.89 4.51 0.04 -0.69 16 24 H 0.41 -5.15 8.74 -74.05 -0.65 -5.79 16 25 H 0.12 -0.70 7.96 -2.39 -0.02 -0.72 16 26 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 27 H -0.30 -1.47 7.11 99.48 0.71 -0.77 16 28 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.42 -4.34 7.70 -92.71 -0.71 -5.05 16 30 H 0.12 -1.98 8.08 -2.38 -0.02 -2.00 16 31 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.10 -1.09 7.84 -2.39 -0.02 -1.11 16 33 H 0.15 -2.48 8.09 -2.39 -0.02 -2.50 16 34 H 0.26 -3.12 8.06 -2.91 -0.02 -3.15 16 35 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 36 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.10 -0.25 7.90 -2.39 -0.02 -0.27 16 38 H 0.27 -3.69 7.47 -2.91 -0.02 -3.71 16 Total: 0.00 -39.07 338.02 1.09 -37.98 By element: Atomic # 1 Polarization: -23.45 SS G_CDS: -0.21 Total: -23.66 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.76 Total: 10.74 kcal Atomic # 7 Polarization: -4.43 SS G_CDS: -6.72 Total: -11.15 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.94 Total: -13.22 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: 2.20 Total: -0.69 kcal Total: -39.07 1.09 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13456056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.592 kcal (2) G-P(sol) polarization free energy of solvation -39.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds