Wall clock time and date at job start Sun Mar 7 2021 00:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37868 * 126.45606 * 2 1 4 4 C 1.46675 * 126.23253 * 359.96115 * 3 2 1 5 5 O 1.21699 * 120.00256 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00184 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00113 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.84973 * 336.19485 * 7 6 4 9 9 C 1.53953 * 113.74306 * 107.40576 * 7 6 4 10 10 C 1.53777 * 87.01949 * 139.94162 * 9 7 6 11 11 H 1.09003 * 113.61429 * 89.23222 * 10 9 7 12 12 C 1.53001 * 113.61095 * 220.04323 * 10 9 7 13 13 N 1.46499 * 109.47683 * 274.13730 * 12 10 9 14 14 C 1.34430 * 126.82358 * 124.97840 * 13 12 10 15 15 N 1.30832 * 108.07308 * 179.79414 * 14 13 12 16 16 C 1.33234 * 109.83313 * 0.40801 * 15 14 13 17 17 N 1.30720 * 108.94479 * 359.58957 * 16 15 14 18 18 C 1.53779 * 87.17529 * 334.63422 * 10 9 7 19 19 N 1.37650 * 107.53672 * 180.22389 * 3 2 1 20 20 C 1.35542 * 108.63994 * 359.56720 * 19 3 2 21 21 C 1.50692 * 125.56468 * 180.13506 * 20 19 3 22 22 O 1.42897 * 109.47227 * 65.32317 * 21 20 19 23 23 Si 1.86295 * 109.47295 * 185.32777 * 21 20 19 24 24 C 1.35450 * 108.87062 * 0.43887 * 20 19 3 25 25 H 1.08997 * 109.46906 * 90.00315 * 1 2 3 26 26 H 1.09006 * 109.46987 * 210.00236 * 1 2 3 27 27 H 1.08996 * 109.47249 * 330.00410 * 1 2 3 28 28 H 0.96997 * 119.99778 * 359.97438 * 6 4 3 29 29 H 1.08995 * 113.61347 * 25.41797 * 9 7 6 30 30 H 1.09002 * 113.66497 * 254.47205 * 9 7 6 31 31 H 1.09009 * 109.47058 * 154.13817 * 12 10 9 32 32 H 1.09002 * 109.47378 * 34.14269 * 12 10 9 33 33 H 1.07997 * 125.95719 * 0.08180 * 14 13 12 34 34 H 1.08002 * 125.53021 * 179.85853 * 16 15 14 35 35 H 1.08999 * 113.61258 * 139.93868 * 18 10 9 36 36 H 1.08992 * 113.62134 * 270.75992 * 18 10 9 37 37 H 0.96993 * 125.68498 * 179.69490 * 19 3 2 38 38 H 1.09004 * 109.47277 * 305.32490 * 21 20 19 39 39 H 0.96701 * 114.00068 * 60.00399 * 22 21 20 40 40 H 1.48504 * 110.00301 * 58.67880 * 23 21 20 41 41 H 1.48498 * 110.00389 * 180.02562 * 23 21 20 42 42 H 1.07998 * 126.06977 * 179.77295 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5092 -0.0008 5 8 0.7026 2.7766 -0.0020 6 7 2.8036 3.4999 -0.0012 7 6 2.3677 4.8986 -0.0026 8 1 1.3646 5.0288 -0.4086 9 6 2.5851 5.6169 1.3416 10 6 3.0191 6.8447 0.5237 11 1 2.1950 7.5080 0.2612 12 6 4.2134 7.5896 1.1235 13 7 3.7381 8.5523 2.1202 14 6 4.1270 8.6414 3.4039 15 7 3.4741 9.6305 3.9582 16 6 2.6565 10.1884 3.0664 17 7 2.7847 9.5649 1.9247 18 6 3.4039 5.8662 -0.5985 19 7 3.6284 0.6626 -0.0051 20 6 3.6218 -0.6928 0.0014 21 6 4.8434 -1.5752 0.0018 22 8 5.5628 -1.3923 1.2228 23 14 4.3223 -3.3572 -0.1510 24 6 2.3380 -1.1247 0.0009 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 3.7499 3.2869 -0.0006 29 1 3.3865 5.1866 1.9420 30 1 1.6670 5.7721 1.9083 31 1 4.7462 8.1182 0.3330 32 1 4.8852 6.8754 1.5997 33 1 4.8551 8.0099 3.8912 34 1 1.9981 11.0235 3.2548 35 1 3.1459 6.2223 -1.5958 36 1 4.4301 5.5052 -0.5303 37 1 4.4190 1.2244 -0.0105 38 1 5.4832 -1.3104 -0.8401 39 1 5.0537 -1.6096 2.0156 40 1 3.5457 -3.5540 -1.4014 41 1 5.5179 -4.2379 -0.1513 42 1 2.0137 -2.1548 0.0018 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:16 Heat of formation + Delta-G solvation = 93.902031 kcal Electronic energy + Delta-G solvation = -25788.446376 eV Core-core repulsion = 21966.632299 eV Total energy + Delta-G solvation = -3821.814077 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.00377 -42.61682 -40.99642 -39.40487 -37.67797 -35.60665 -34.26868 -33.40745 -32.18092 -31.62470 -29.16893 -28.20530 -26.97220 -26.79590 -24.56331 -22.97221 -22.88792 -22.06204 -21.50344 -21.08181 -20.18157 -19.44785 -18.41754 -18.02717 -17.42068 -16.75566 -16.70427 -16.46017 -16.16208 -15.99645 -15.74415 -15.36965 -15.16210 -15.07519 -14.78729 -14.40690 -14.31718 -13.98963 -13.71243 -13.61754 -13.55433 -13.52540 -13.26505 -12.98584 -12.74911 -12.40685 -12.19815 -12.00064 -11.92423 -11.59535 -11.14727 -10.98877 -10.80937 -10.65364 -10.54649 -10.23578 -9.82971 -9.21056 -4.91178 0.27826 0.68705 1.23252 1.43165 1.51622 1.72471 1.90841 1.99511 2.01443 2.21610 2.22255 3.31950 3.41950 3.43658 3.48014 3.52432 3.57380 3.68731 3.79819 3.86050 4.10277 4.13683 4.14870 4.21697 4.36431 4.42658 4.47472 4.61876 4.68668 4.71249 4.73193 4.80108 4.87601 4.88031 4.96563 5.10186 5.15722 5.29397 5.33740 5.43884 5.45653 5.62464 5.83785 5.93771 6.30209 6.47200 6.68437 7.05107 7.11844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.088 4.088 3 C -0.070 4.070 4 C 0.586 3.414 5 O -0.566 6.566 6 N -0.705 5.705 7 C 0.118 3.882 8 H 0.090 0.910 9 C -0.141 4.141 10 C -0.114 4.114 11 H 0.082 0.918 12 C 0.136 3.864 13 N -0.378 5.378 14 C 0.257 3.743 15 N -0.585 5.585 16 C 0.186 3.814 17 N -0.351 5.351 18 C -0.116 4.116 19 N -0.511 5.511 20 C 0.035 3.965 21 C -0.051 4.051 22 O -0.553 6.553 23 Si 0.799 3.201 24 C -0.208 4.208 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.411 0.589 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.259 0.741 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.428 0.572 38 H 0.118 0.882 39 H 0.399 0.601 40 H -0.288 1.288 41 H -0.294 1.294 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.691 -4.285 0.461 7.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.183 4.183 4 C 0.375 3.625 5 O -0.445 6.445 6 N -0.356 5.356 7 C 0.014 3.986 8 H 0.108 0.892 9 C -0.179 4.179 10 C -0.134 4.134 11 H 0.100 0.900 12 C 0.016 3.984 13 N -0.168 5.168 14 C -0.039 4.039 15 N -0.313 5.313 16 C -0.117 4.117 17 N -0.179 5.179 18 C -0.155 4.155 19 N -0.109 5.109 20 C -0.084 4.084 21 C -0.161 4.161 22 O -0.361 6.361 23 Si 0.703 3.297 24 C -0.232 4.232 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.160 0.840 33 H 0.274 0.726 34 H 0.247 0.753 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.268 0.732 38 H 0.135 0.865 39 H 0.250 0.750 40 H -0.215 1.215 41 H -0.222 1.222 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.163 -4.233 -0.802 7.520 hybrid contribution 0.594 0.887 -0.357 1.125 sum 6.757 -3.346 -1.159 7.629 Atomic orbital electron populations 1.20337 0.89380 1.02979 1.02121 1.20178 0.96244 0.91486 1.01731 1.20112 0.84564 0.93026 1.20634 1.17287 0.85692 0.83886 0.75597 1.90828 1.17873 1.83815 1.51970 1.45699 1.09540 1.05458 1.74890 1.22477 0.99702 0.78774 0.97697 0.89225 1.23584 1.02076 0.95546 0.96729 1.22513 0.98316 0.95081 0.97513 0.90006 1.22205 0.96008 0.89383 0.90834 1.50736 1.30280 1.24941 1.10874 1.26880 0.98295 0.96027 0.82721 1.70539 1.13501 1.12517 1.34774 1.26446 0.98381 1.00601 0.86226 1.77959 1.11333 1.04096 1.24557 1.23314 1.00362 0.93444 0.98361 1.41782 1.06704 1.06709 1.55714 1.21292 0.97013 0.83408 1.06697 1.24973 0.91587 1.08897 0.90635 1.86474 1.42593 1.91169 1.15826 0.92990 0.79602 0.71310 0.85789 1.20841 0.90863 0.99507 1.11944 0.91802 0.89899 0.92197 0.75213 0.87299 0.93543 0.88077 0.84002 0.72555 0.75288 0.89914 0.85879 0.73172 0.86464 0.75037 1.21484 1.22191 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 9.83 71.24 0.70 0.29 16 2 C -0.09 -0.34 6.21 -19.56 -0.12 -0.46 16 3 C -0.07 -0.17 7.06 40.35 0.28 0.12 16 4 C 0.59 2.80 7.79 86.45 0.67 3.47 16 5 O -0.57 -7.59 14.40 -4.34 -0.06 -7.66 16 6 N -0.70 2.53 5.36 -443.70 -2.38 0.15 16 7 C 0.12 -0.33 4.24 45.58 0.19 -0.14 16 8 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 9 C -0.14 0.59 7.45 31.18 0.23 0.82 16 10 C -0.11 0.67 3.86 -10.27 -0.04 0.63 16 11 H 0.08 0.05 8.03 -2.39 -0.02 0.03 16 12 C 0.14 -1.20 6.37 86.38 0.55 -0.65 16 13 N -0.38 0.22 3.69 -352.05 -1.30 -1.08 16 14 C 0.26 -0.33 12.63 180.36 2.28 1.95 16 15 N -0.59 -3.57 11.19 -204.00 -2.28 -5.86 16 16 C 0.19 1.08 13.03 180.77 2.36 3.43 16 17 N -0.35 -2.26 12.47 -61.24 -0.76 -3.02 16 18 C -0.12 1.08 7.40 31.12 0.23 1.31 16 19 N -0.51 2.03 5.99 -171.94 -1.03 1.00 16 20 C 0.03 -0.12 6.46 41.34 0.27 0.15 16 21 C -0.05 0.30 3.08 71.23 0.22 0.52 16 22 O -0.55 3.31 12.88 -148.98 -1.92 1.40 16 23 Si 0.80 -4.67 30.56 68.60 2.10 -2.57 16 24 C -0.21 0.21 9.27 22.01 0.20 0.41 16 25 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.08 0.03 8.14 -2.38 -0.02 0.01 16 27 H 0.06 0.54 6.49 -2.39 -0.02 0.52 16 28 H 0.41 -4.43 7.86 -92.71 -0.73 -5.16 16 29 H 0.11 -0.95 7.92 -2.39 -0.02 -0.96 16 30 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.10 -0.99 8.14 -2.38 -0.02 -1.01 16 32 H 0.14 -2.37 7.82 -2.39 -0.02 -2.38 16 33 H 0.26 -3.04 8.06 -2.91 -0.02 -3.07 16 34 H 0.23 0.05 8.06 -2.91 -0.02 0.02 16 35 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.12 -1.90 8.08 -2.39 -0.02 -1.92 16 37 H 0.43 -4.22 8.19 -92.71 -0.76 -4.98 16 38 H 0.12 -0.73 7.96 -2.39 -0.02 -0.75 16 39 H 0.40 -5.14 8.70 -74.06 -0.64 -5.79 16 40 H -0.29 -0.07 7.11 99.48 0.71 0.64 16 41 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 42 H 0.17 -0.90 6.19 -2.91 -0.02 -0.91 16 Total: 0.00 -30.50 356.94 -0.62 -31.12 By element: Atomic # 1 Polarization: -24.33 SS G_CDS: -1.01 Total: -25.34 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 8.03 Total: 11.86 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -7.75 Total: -8.81 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.98 Total: -6.26 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.10 Total: -2.57 kcal Total: -30.50 -0.62 -31.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.024 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds