Wall clock time and date at job start Sun Mar 7 2021 00:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47166 * 2 1 4 4 C 1.50698 * 109.47226 * 240.00254 * 2 1 3 5 5 C 1.34851 * 125.89234 * 119.97499 * 4 2 1 6 6 C 1.40897 * 107.41437 * 180.02562 * 5 4 2 7 7 C 1.34846 * 107.42164 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.89503 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46617 * 85.02315 * 8 7 6 10 10 O 1.21283 * 120.00521 * 359.73030 * 9 8 7 11 11 N 1.34784 * 119.99774 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72962 * 11 9 8 13 13 H 1.08994 * 112.85555 * 23.80061 * 12 11 9 14 14 C 1.53777 * 113.61200 * 155.00334 * 12 11 9 15 15 C 1.53781 * 87.08274 * 139.97613 * 14 12 11 16 16 H 1.09001 * 113.61023 * 89.20145 * 15 14 12 17 17 C 1.52999 * 113.61679 * 220.01215 * 15 14 12 18 18 N 1.46498 * 109.47300 * 184.99822 * 17 15 14 19 19 C 1.34429 * 126.82114 * 125.00601 * 18 17 15 20 20 N 1.30828 * 108.07477 * 179.97438 * 19 18 17 21 21 C 1.33236 * 109.83354 * 359.97438 * 20 19 18 22 22 N 1.30716 * 108.94368 * 359.76103 * 21 20 19 23 23 C 1.53775 * 87.07928 * 334.56404 * 15 14 12 24 24 N 1.36347 * 108.21742 * 0.26526 * 7 6 5 25 25 H 0.96697 * 114.00103 * 299.99838 * 1 2 3 26 26 H 1.09006 * 109.47385 * 119.99899 * 2 1 3 27 27 H 1.48498 * 110.00097 * 300.00367 * 3 2 1 28 28 H 1.48499 * 109.99921 * 61.32237 * 3 2 1 29 29 H 1.07993 * 126.29184 * 359.97438 * 5 4 2 30 30 H 1.08005 * 126.28429 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46798 * 325.03206 * 8 7 6 32 32 H 1.08993 * 109.47546 * 205.02758 * 8 7 6 33 33 H 0.97005 * 119.99846 * 359.72750 * 11 9 8 34 34 H 1.09003 * 113.61102 * 254.52380 * 14 12 11 35 35 H 1.08994 * 113.61778 * 25.42685 * 14 12 11 36 36 H 1.09003 * 109.47447 * 305.00689 * 17 15 14 37 37 H 1.09008 * 109.46399 * 65.00425 * 17 15 14 38 38 H 1.07994 * 125.96061 * 359.92303 * 19 18 17 39 39 H 1.08001 * 125.52962 * 179.97438 * 21 20 19 40 40 H 1.08997 * 113.61959 * 270.88049 * 23 15 14 41 41 H 1.09002 * 113.61358 * 139.97938 * 23 15 14 42 42 H 0.96993 * 125.63866 * 179.73714 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7095 -0.1725 -2.1915 6 6 2.9441 -1.1744 -3.1540 7 6 2.3009 -2.2864 -2.7441 8 6 2.2748 -3.6089 -3.4663 9 6 3.4937 -4.4110 -3.0896 10 8 4.3063 -3.9518 -2.3151 11 7 3.6839 -5.6362 -3.6179 12 6 4.8718 -6.4136 -3.2563 13 1 5.2932 -6.1201 -2.2949 14 6 4.6842 -7.9322 -3.4089 15 6 6.1169 -7.9739 -3.9662 16 1 6.8798 -8.1087 -3.1995 17 6 6.2872 -8.9303 -5.1482 18 7 7.7006 -8.9895 -5.5289 19 6 8.4628 -10.0924 -5.6277 20 7 9.6638 -9.7243 -5.9933 21 6 9.7066 -8.4005 -6.1376 22 7 8.5267 -7.9060 -5.8695 23 6 5.9129 -6.5082 -4.3842 24 7 1.6728 -2.0062 -1.5668 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 0.8900 27 1 1.5614 2.4679 -1.2084 28 1 1.5879 2.4585 1.2243 29 1 3.0833 0.8403 -2.2189 30 1 3.5312 -1.0706 -4.0545 31 1 2.2726 -3.4352 -4.5424 32 1 1.3768 -4.1588 -3.1851 33 1 3.0341 -6.0034 -4.2376 34 1 4.5696 -8.4555 -2.4597 35 1 3.9234 -8.2069 -4.1395 36 1 5.9457 -9.9253 -4.8627 37 1 5.6981 -8.5725 -5.9928 38 1 8.1403 -11.1053 -5.4376 39 1 10.5744 -7.8289 -6.4320 40 1 5.4880 -6.3935 -5.3814 41 1 6.7901 -5.8818 -4.2223 42 1 1.1332 -2.6267 -1.0525 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:19 Heat of formation + Delta-G solvation = 97.803416 kcal Electronic energy + Delta-G solvation = -25266.975887 eV Core-core repulsion = 21445.330987 eV Total energy + Delta-G solvation = -3821.644900 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.96140 -42.33360 -41.06058 -39.45317 -37.85286 -35.41543 -34.09032 -32.99988 -32.14088 -31.95612 -29.77281 -28.73242 -26.70541 -25.43932 -24.21579 -22.84463 -22.52747 -21.68739 -21.35818 -21.17684 -20.57294 -18.62336 -18.43808 -18.12532 -18.05176 -17.13857 -16.72709 -16.35926 -16.09286 -16.02223 -15.70188 -15.24969 -15.08981 -14.89987 -14.65760 -14.52702 -14.35522 -14.08372 -13.72787 -13.59477 -13.43092 -13.36006 -13.14323 -12.91251 -12.82660 -12.48880 -12.19439 -11.97754 -11.89323 -11.38747 -10.98506 -10.93128 -10.77472 -10.64083 -10.54658 -10.01694 -9.82103 -8.96557 -4.88007 0.72572 1.06171 1.26440 1.48150 1.59792 1.61666 1.86082 1.93734 2.02992 2.30440 2.50336 3.31888 3.32917 3.47053 3.55639 3.64810 3.68236 3.78401 3.89689 3.95969 4.01993 4.13882 4.20866 4.24213 4.30109 4.36440 4.46293 4.58814 4.60840 4.73285 4.75172 4.78776 4.82572 5.00285 5.06401 5.21162 5.22608 5.28204 5.36766 5.47646 5.59425 5.97641 5.97974 6.10505 6.50048 6.55582 6.67180 7.15666 7.28857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.062 4.062 3 Si 0.783 3.217 4 C 0.018 3.982 5 C -0.205 4.205 6 C -0.202 4.202 7 C 0.033 3.967 8 C -0.066 4.066 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.115 3.885 13 H 0.084 0.916 14 C -0.112 4.112 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.135 3.865 18 N -0.379 5.379 19 C 0.256 3.744 20 N -0.586 5.586 21 C 0.183 3.817 22 N -0.344 5.344 23 C -0.135 4.135 24 N -0.537 5.537 25 H 0.397 0.603 26 H 0.089 0.911 27 H -0.298 1.298 28 H -0.276 1.276 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.420 0.580 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.260 0.740 39 H 0.229 0.771 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -6.501 -0.168 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.171 4.171 3 Si 0.686 3.314 4 C -0.095 4.095 5 C -0.230 4.230 6 C -0.226 4.226 7 C -0.081 4.081 8 C -0.107 4.107 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.358 5.358 12 C 0.010 3.990 13 H 0.102 0.898 14 C -0.150 4.150 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.014 3.986 18 N -0.170 5.170 19 C -0.040 4.040 20 N -0.314 5.314 21 C -0.120 4.120 22 N -0.172 5.172 23 C -0.174 4.174 24 N -0.133 5.133 25 H 0.248 0.752 26 H 0.107 0.893 27 H -0.226 1.226 28 H -0.203 1.203 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.258 0.742 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.119 0.881 38 H 0.275 0.725 39 H 0.245 0.755 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.052 -5.212 -0.131 7.260 hybrid contribution -1.274 -0.358 0.557 1.436 sum -6.326 -5.569 0.426 8.439 Atomic orbital electron populations 1.86521 1.18457 1.80945 1.51259 1.24666 0.84014 1.12172 0.96206 0.93377 0.90696 0.70638 0.76716 1.19911 1.04916 0.85532 0.99170 1.20866 1.05530 1.00685 0.95926 1.20837 1.06038 0.93378 1.02374 1.19947 1.01853 0.96899 0.89370 1.20254 0.97263 0.90065 1.03069 1.21034 0.87501 0.81957 0.79770 1.90755 1.47373 1.70607 1.36940 1.45833 1.25344 1.16611 1.48024 1.22412 0.86259 0.92120 0.98233 0.89790 1.23292 0.95538 0.92976 1.03243 1.22498 0.98657 0.94834 0.97288 0.90096 1.22228 0.74703 1.03904 0.97723 1.50787 1.12055 1.04375 1.49767 1.26912 0.86154 0.96197 0.94767 1.70534 1.22267 1.13681 1.24927 1.26433 0.96815 0.90217 0.98553 1.78015 1.03743 1.11872 1.23610 1.23425 0.98365 0.96199 0.99434 1.41845 1.40960 1.11098 1.19363 0.75212 0.89337 1.22552 1.20261 0.83304 0.84071 0.83989 0.85220 0.74208 0.89374 0.85977 0.83822 0.88086 0.72472 0.75518 0.88727 0.94077 0.74328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.82 12.86 -148.98 -1.92 -3.73 16 2 C -0.06 -0.14 3.07 71.24 0.22 0.07 16 3 Si 0.78 0.58 30.58 68.60 2.10 2.68 16 4 C 0.02 0.12 6.54 41.08 0.27 0.39 16 5 C -0.21 -1.65 9.37 22.14 0.21 -1.44 16 6 C -0.20 -1.57 10.76 22.14 0.24 -1.33 16 7 C 0.03 0.15 5.66 41.08 0.23 0.39 16 8 C -0.07 0.26 6.24 29.10 0.18 0.44 16 9 C 0.51 0.78 7.82 87.65 0.69 1.46 16 10 O -0.58 -7.45 15.63 -3.04 -0.05 -7.49 16 11 N -0.71 3.79 5.35 -440.04 -2.36 1.43 16 12 C 0.12 -0.35 4.24 45.52 0.19 -0.16 16 13 H 0.08 0.32 7.46 -2.39 -0.02 0.31 16 14 C -0.11 1.20 7.39 31.12 0.23 1.43 16 15 C -0.11 0.73 3.86 -10.27 -0.04 0.69 16 16 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 17 C 0.13 -1.26 6.39 86.38 0.55 -0.71 16 18 N -0.38 0.37 3.69 -352.06 -1.30 -0.93 16 19 C 0.26 -0.40 12.63 180.36 2.28 1.87 16 20 N -0.59 -3.48 11.19 -204.01 -2.28 -5.77 16 21 C 0.18 1.05 13.03 180.77 2.36 3.40 16 22 N -0.34 -2.09 12.58 -61.25 -0.77 -2.86 16 23 C -0.14 0.24 7.43 31.12 0.23 0.48 16 24 N -0.54 -2.63 6.08 -171.11 -1.04 -3.67 16 25 H 0.40 -2.06 8.74 -74.06 -0.65 -2.71 16 26 H 0.09 -0.11 7.96 -2.38 -0.02 -0.13 16 27 H -0.30 -2.52 7.11 99.48 0.71 -1.81 16 28 H -0.28 -0.84 7.11 99.48 0.71 -0.14 16 29 H 0.15 0.70 6.22 -2.91 -0.02 0.68 16 30 H 0.14 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.14 -1.25 8.14 -2.39 -0.02 -1.27 16 32 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 33 H 0.42 -5.49 8.73 -92.70 -0.81 -6.29 16 34 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.12 -1.98 8.08 -2.39 -0.02 -2.00 16 36 H 0.14 -2.44 8.09 -2.39 -0.02 -2.46 16 37 H 0.10 -1.09 7.84 -2.38 -0.02 -1.11 16 38 H 0.26 -3.14 8.06 -2.91 -0.02 -3.17 16 39 H 0.23 0.11 8.06 -2.91 -0.02 0.08 16 40 H 0.09 -0.33 7.90 -2.39 -0.02 -0.35 16 41 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.42 0.29 8.96 -92.71 -0.83 -0.54 16 Total: 0.00 -34.84 361.46 -0.95 -35.79 By element: Atomic # 1 Polarization: -21.27 SS G_CDS: -1.17 Total: -22.44 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 7.83 Total: 6.99 kcal Atomic # 7 Polarization: -4.05 SS G_CDS: -7.75 Total: -11.79 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.96 Total: -11.23 kcal Atomic # 14 Polarization: 0.58 SS G_CDS: 2.10 Total: 2.68 kcal Total: -34.84 -0.95 -35.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.597 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds