Wall clock time and date at job start Sun Mar 7 2021 00:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46868 * 2 1 4 4 C 1.50696 * 109.47338 * 240.00355 * 2 1 3 5 5 C 1.31116 * 118.54763 * 119.99803 * 4 2 1 6 6 N 1.38927 * 121.84516 * 180.44404 * 5 4 2 7 7 C 1.47027 * 118.88522 * 346.66741 * 6 5 4 8 8 C 1.53537 * 107.66105 * 43.66155 * 7 6 5 9 9 C 1.50627 * 118.46796 * 300.03734 * 4 2 1 10 10 C 1.50703 * 109.55249 * 39.72207 * 9 4 2 11 11 O 1.21277 * 119.99759 * 120.71869 * 10 9 4 12 12 N 1.34774 * 119.99757 * 300.71188 * 10 9 4 13 13 C 1.46503 * 119.99619 * 180.02562 * 12 10 9 14 14 H 1.09007 * 112.84935 * 334.66722 * 13 12 10 15 15 C 1.53780 * 113.61775 * 105.86387 * 13 12 10 16 16 C 1.53949 * 87.01829 * 139.95019 * 15 13 12 17 17 H 1.08996 * 113.61576 * 89.20606 * 16 15 13 18 18 C 1.53007 * 113.66436 * 220.06964 * 16 15 13 19 19 N 1.46507 * 109.47035 * 272.56131 * 18 16 15 20 20 C 1.34420 * 126.82075 * 124.71140 * 19 18 16 21 21 N 1.30836 * 108.07879 * 179.89359 * 20 19 18 22 22 C 1.33250 * 109.82409 * 0.37916 * 21 20 19 23 23 N 1.30716 * 108.94670 * 359.76675 * 22 21 20 24 24 C 1.53775 * 87.11693 * 334.63879 * 16 15 13 25 25 H 0.96697 * 114.00626 * 299.99958 * 1 2 3 26 26 H 1.08996 * 109.47022 * 119.99277 * 2 1 3 27 27 H 1.48504 * 110.00034 * 300.00017 * 3 2 1 28 28 H 1.48503 * 109.99978 * 61.31447 * 3 2 1 29 29 H 1.07998 * 119.07891 * 0.43042 * 5 4 2 30 30 H 0.97002 * 120.55253 * 166.68690 * 6 5 4 31 31 H 1.08999 * 109.82114 * 284.11975 * 7 6 5 32 32 H 1.09000 * 109.81723 * 163.20116 * 7 6 5 33 33 H 1.09002 * 109.62272 * 58.77362 * 8 7 6 34 34 H 1.09001 * 109.62157 * 179.14540 * 8 7 6 35 35 H 1.09000 * 109.33878 * 280.09573 * 9 4 2 36 36 H 0.96998 * 120.00030 * 0.02562 * 12 10 9 37 37 H 1.08999 * 113.61414 * 254.53349 * 15 13 12 38 38 H 1.09007 * 113.60999 * 25.42710 * 15 13 12 39 39 H 1.08990 * 109.47281 * 32.55960 * 18 16 15 40 40 H 1.09003 * 109.46995 * 152.56504 * 18 16 15 41 41 H 1.07998 * 125.96828 * 0.03688 * 20 19 18 42 42 H 1.08000 * 125.52297 * 179.72428 * 22 21 20 43 43 H 1.08999 * 113.61673 * 270.81697 * 24 16 15 44 44 H 1.08998 * 113.61909 * 139.90624 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.6832 -0.0458 -2.0745 6 7 3.1758 -0.6303 -3.2346 7 6 3.1005 -2.0913 -3.3810 8 6 1.7092 -2.5358 -2.9074 9 6 1.5459 -2.1520 -1.4350 10 6 0.1102 -2.3534 -1.0233 11 8 -0.6995 -2.7630 -1.8279 12 7 -0.2737 -2.0785 0.2390 13 6 -1.6692 -2.2749 0.6394 14 1 -2.3630 -2.2115 -0.1990 15 6 -1.8873 -3.5113 1.5273 16 6 -2.8728 -2.6533 2.3413 17 1 -3.8968 -2.6939 1.9701 18 6 -2.7792 -2.8773 3.8520 19 7 -3.6502 -3.9912 4.2355 20 6 -3.2922 -5.0998 4.9061 21 7 -4.3562 -5.8470 5.0527 22 6 -5.4059 -5.2550 4.4842 23 7 -5.0237 -4.1157 3.9700 24 6 -2.0879 -1.4253 1.8509 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5137 0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5877 2.4586 1.2242 29 1 2.9262 0.9848 -1.8621 30 1 3.5631 -0.0836 -3.9361 31 1 3.8680 -2.5642 -2.7684 32 1 3.2401 -2.3656 -4.4267 33 1 0.9436 -2.0381 -3.5026 34 1 1.6132 -3.6161 -3.0169 35 1 2.1865 -2.7872 -0.8233 36 1 0.3739 -1.7507 0.8824 37 1 -2.3591 -4.3448 1.0069 38 1 -1.0007 -3.8083 2.0877 39 1 -1.7495 -3.1118 4.1215 40 1 -3.0945 -1.9735 4.3735 41 1 -2.3000 -5.3322 5.2637 42 1 -6.4096 -5.6526 4.4528 43 1 -1.2563 -1.1508 2.4999 44 1 -2.7215 -0.5772 1.5914 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_15608500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:26 Heat of formation + Delta-G solvation = 104.391059 kcal Electronic energy + Delta-G solvation = -27696.320072 eV Core-core repulsion = 23847.649355 eV Total energy + Delta-G solvation = -3848.670717 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.98448 -41.61737 -40.12158 -38.79065 -37.81778 -35.25185 -33.97162 -33.13997 -32.80878 -32.16707 -29.09172 -27.24454 -26.74267 -25.97772 -24.15625 -23.08909 -22.93652 -22.38643 -21.59083 -20.56047 -19.17858 -18.61137 -18.42528 -18.30903 -17.81422 -17.31918 -16.74234 -16.31143 -16.27403 -15.84962 -15.67878 -15.25327 -15.12276 -14.97013 -14.78483 -14.50988 -14.34659 -13.87225 -13.68369 -13.61269 -13.44137 -13.21543 -13.09516 -12.99720 -12.59811 -12.41024 -12.23918 -11.86113 -11.82907 -11.67275 -11.48883 -11.23010 -10.98291 -10.80584 -10.68738 -10.52165 -10.41432 -9.43688 -8.38882 -4.83763 0.70517 1.26235 1.46117 1.47722 1.65346 1.87527 2.00886 2.07008 2.42234 2.68773 3.41183 3.47799 3.50508 3.53711 3.61019 3.71759 3.85768 3.90964 3.92879 4.04555 4.15342 4.18074 4.27124 4.28746 4.38836 4.45267 4.52382 4.57493 4.69210 4.70435 4.79353 4.79918 4.82024 4.90619 4.97785 5.05007 5.23687 5.30002 5.30620 5.34105 5.45330 5.48948 5.74612 5.96418 6.35461 6.69536 6.78893 6.96843 7.13090 7.49843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.060 4.060 3 Si 0.735 3.265 4 C -0.253 4.253 5 C 0.153 3.847 6 N -0.748 5.748 7 C 0.124 3.876 8 C -0.122 4.122 9 C -0.037 4.037 10 C 0.528 3.472 11 O -0.610 6.610 12 N -0.664 5.664 13 C 0.126 3.874 14 H 0.068 0.932 15 C -0.143 4.143 16 C -0.116 4.116 17 H 0.074 0.926 18 C 0.137 3.863 19 N -0.377 5.377 20 C 0.257 3.743 21 N -0.586 5.586 22 C 0.185 3.815 23 N -0.353 5.353 24 C -0.113 4.113 25 H 0.378 0.622 26 H 0.104 0.896 27 H -0.319 1.319 28 H -0.292 1.292 29 H 0.145 0.855 30 H 0.412 0.588 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.414 0.586 37 H 0.036 0.964 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.260 0.740 42 H 0.230 0.770 43 H 0.128 0.872 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.279 3.377 4.413 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.171 4.171 3 Si 0.644 3.356 4 C -0.264 4.264 5 C 0.031 3.969 6 N -0.379 5.379 7 C 0.000 4.000 8 C -0.161 4.161 9 C -0.059 4.059 10 C 0.316 3.684 11 O -0.492 6.492 12 N -0.317 5.317 13 C 0.020 3.980 14 H 0.086 0.914 15 C -0.182 4.182 16 C -0.136 4.136 17 H 0.092 0.908 18 C 0.017 3.983 19 N -0.168 5.168 20 C -0.039 4.039 21 N -0.314 5.314 22 C -0.117 4.117 23 N -0.181 5.181 24 C -0.152 4.152 25 H 0.228 0.772 26 H 0.122 0.878 27 H -0.248 1.248 28 H -0.220 1.220 29 H 0.161 0.839 30 H 0.248 0.752 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.255 0.745 37 H 0.055 0.945 38 H 0.130 0.870 39 H 0.162 0.838 40 H 0.120 0.880 41 H 0.276 0.724 42 H 0.246 0.754 43 H 0.146 0.854 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.193 3.747 3.104 11.295 hybrid contribution -1.392 0.290 -0.001 1.422 sum 8.801 4.037 3.103 10.168 Atomic orbital electron populations 1.87084 1.18836 1.77936 1.51314 1.24580 0.83926 1.09523 0.99057 0.94802 0.91498 0.73896 0.75420 1.19738 1.09102 0.95568 1.02007 1.20543 0.93188 0.96598 0.86572 1.44655 1.67363 1.07062 1.18782 1.21682 0.95242 0.80501 1.02606 1.21670 0.98017 1.01479 0.94898 1.19790 0.92303 0.95890 0.97867 1.20782 0.90671 0.74869 0.82105 1.90658 1.56071 1.49314 1.53171 1.45817 1.09997 1.64480 1.11424 1.22121 0.83894 0.96498 0.95508 0.91420 1.23633 0.99718 0.96774 0.98098 1.22539 0.99020 0.98312 0.93699 0.90766 1.22232 0.94010 0.87332 0.94776 1.50749 1.06319 1.18203 1.41497 1.26899 1.01279 0.83134 0.92582 1.70543 0.99567 1.33728 1.27559 1.26428 1.00780 0.89877 0.94656 1.77958 0.92145 1.21995 1.26027 1.23293 1.00499 0.95989 0.95369 0.77158 0.87843 1.24829 1.21957 0.83850 0.75181 0.90164 0.88808 0.93953 0.90710 0.86523 0.74461 0.94456 0.87031 0.83770 0.88048 0.72411 0.75387 0.85412 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.73 7.75 -148.98 -1.15 0.58 16 2 C -0.06 0.40 1.82 71.23 0.13 0.53 16 3 Si 0.73 -3.91 29.68 68.60 2.04 -1.88 16 4 C -0.25 0.57 5.31 -16.63 -0.09 0.48 16 5 C 0.15 -0.48 9.63 83.41 0.80 0.32 16 6 N -0.75 3.16 5.83 -345.91 -2.02 1.15 16 7 C 0.12 -0.53 7.16 86.46 0.62 0.09 16 8 C -0.12 -0.30 4.89 30.79 0.15 -0.15 16 9 C -0.04 -0.02 2.76 -12.29 -0.03 -0.05 16 10 C 0.53 3.43 6.33 87.66 0.56 3.98 16 11 O -0.61 -10.87 15.42 -3.02 -0.05 -10.92 16 12 N -0.66 1.21 2.82 -440.02 -1.24 -0.03 16 13 C 0.13 -0.05 3.95 45.52 0.18 0.13 16 14 H 0.07 0.61 7.50 -2.38 -0.02 0.59 16 15 C -0.14 0.33 7.45 31.18 0.23 0.56 16 16 C -0.12 0.50 3.88 -10.21 -0.04 0.46 16 17 H 0.07 0.23 8.00 -2.39 -0.02 0.21 16 18 C 0.14 -1.11 6.39 86.38 0.55 -0.56 16 19 N -0.38 -0.09 3.69 -352.05 -1.30 -1.39 16 20 C 0.26 -0.17 12.63 180.36 2.28 2.10 16 21 N -0.59 -3.99 11.19 -204.00 -2.28 -6.27 16 22 C 0.19 1.25 13.03 180.76 2.36 3.60 16 23 N -0.35 -2.65 12.45 -61.24 -0.76 -3.42 16 24 C -0.11 0.96 6.58 31.12 0.20 1.16 16 25 H 0.38 -3.81 8.11 -74.06 -0.60 -4.42 16 26 H 0.10 -1.45 7.08 -2.39 -0.02 -1.47 16 27 H -0.32 -1.52 7.11 99.48 0.71 -0.81 16 28 H -0.29 0.21 7.11 99.48 0.71 0.92 16 29 H 0.14 -0.91 4.37 -2.91 -0.01 -0.92 16 30 H 0.41 -3.19 8.96 -92.71 -0.83 -4.02 16 31 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.04 0.42 7.77 -2.39 -0.02 0.40 16 34 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.41 -3.70 5.74 -92.71 -0.53 -4.23 16 37 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.11 -0.85 7.90 -2.38 -0.02 -0.87 16 39 H 0.14 -2.36 7.79 -2.39 -0.02 -2.38 16 40 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.26 -2.98 8.06 -2.91 -0.02 -3.00 16 42 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 43 H 0.13 -2.06 8.07 -2.39 -0.02 -2.08 16 44 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: 0.00 -34.56 349.24 0.26 -34.30 By element: Atomic # 1 Polarization: -23.91 SS G_CDS: -0.87 Total: -24.79 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.90 Total: 12.67 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -7.60 Total: -9.97 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.20 Total: -10.34 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.04 Total: -1.88 kcal Total: -34.56 0.26 -34.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_15608500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.690 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds