Wall clock time and date at job start Sun Mar 7 2021 00:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47309 * 2 1 4 4 C 1.50696 * 109.47243 * 239.99617 * 2 1 3 5 5 C 1.34499 * 125.49202 * 149.97440 * 4 2 1 6 6 C 1.46751 * 106.36168 * 180.02562 * 5 4 2 7 7 C 1.47273 * 126.96870 * 179.97438 * 6 5 4 8 8 O 1.21625 * 119.99972 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99580 * 0.02769 * 7 6 5 10 10 C 1.46494 * 119.99525 * 179.97438 * 9 7 6 11 11 H 1.09000 * 112.91148 * 23.75262 * 10 9 7 12 12 C 1.53786 * 113.61370 * 155.00031 * 10 9 7 13 13 C 1.53781 * 87.17350 * 140.02367 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 C 1.52991 * 113.61529 * 219.97788 * 13 12 10 16 16 N 1.46508 * 109.47429 * 184.99923 * 15 13 12 17 17 C 1.34426 * 126.81984 * 124.70705 * 16 15 13 18 18 N 1.30840 * 108.07312 * 179.89701 * 17 16 15 19 19 C 1.33244 * 109.82711 * 0.38357 * 18 17 16 20 20 N 1.30709 * 108.94622 * 359.76066 * 19 18 17 21 21 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 22 22 C 1.36333 * 106.06441 * 0.25428 * 6 5 4 23 23 C 1.51004 * 126.79199 * 179.80465 * 22 6 5 24 24 C 1.53394 * 108.24536 * 164.25591 * 23 22 6 25 25 C 1.53154 * 109.04365 * 48.47933 * 24 23 22 26 26 C 1.53375 * 109.31460 * 290.19583 * 25 24 23 27 27 N 1.35216 * 108.66027 * 359.59265 * 22 6 5 28 28 H 0.96701 * 113.99503 * 300.00130 * 1 2 3 29 29 H 1.09003 * 109.47060 * 119.99744 * 2 1 3 30 30 H 1.48494 * 110.00263 * 178.68231 * 3 2 1 31 31 H 1.48502 * 109.99534 * 299.99849 * 3 2 1 32 32 H 1.07993 * 126.81852 * 0.02562 * 5 4 2 33 33 H 0.97000 * 119.99938 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61357 * 25.43283 * 12 10 9 35 35 H 1.09002 * 113.61608 * 254.61445 * 12 10 9 36 36 H 1.08997 * 109.47550 * 304.99814 * 15 13 12 37 37 H 1.09002 * 109.47334 * 65.00084 * 15 13 12 38 38 H 1.07996 * 125.96554 * 0.04585 * 17 16 15 39 39 H 1.07998 * 125.52380 * 179.80008 * 19 18 17 40 40 H 1.09005 * 113.61471 * 139.98321 * 21 13 12 41 41 H 1.09003 * 113.61469 * 270.88099 * 21 13 12 42 42 H 1.09005 * 109.70479 * 283.94206 * 23 22 6 43 43 H 1.09001 * 109.70874 * 44.52023 * 23 22 6 44 44 H 1.09001 * 109.53938 * 168.35279 * 24 23 22 45 45 H 1.09005 * 109.54285 * 288.52167 * 24 23 22 46 46 H 1.09000 * 109.45796 * 50.44453 * 25 24 23 47 47 H 1.09004 * 109.45816 * 170.40471 * 25 24 23 48 48 H 1.08997 * 110.12629 * 291.23513 * 26 25 24 49 49 H 1.09003 * 109.09241 * 170.84457 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 3.0856 -0.4460 -1.8682 6 6 3.1549 -1.3771 -3.0005 7 6 4.2325 -1.4784 -3.9991 8 8 4.1594 -2.3018 -4.8913 9 7 5.2997 -0.6586 -3.9244 10 6 6.3719 -0.7597 -4.9174 11 1 6.0398 -1.2014 -5.8570 12 6 7.1700 0.5425 -5.0972 13 6 8.4307 -0.3329 -5.1929 14 1 8.6604 -0.6581 -6.2076 15 6 9.6422 0.2561 -4.4677 16 7 10.8161 -0.5848 -4.7155 17 6 11.9969 -0.1906 -5.2230 18 7 12.7812 -1.2360 -5.2854 19 6 12.1364 -2.3122 -4.8366 20 7 10.9292 -1.9640 -4.4759 21 6 7.6688 -1.3828 -4.3671 22 6 2.0164 -2.1250 -2.9441 23 6 1.6095 -3.2258 -3.8944 24 6 0.4858 -4.0369 -3.2368 25 6 -0.5761 -3.0739 -2.6978 26 6 -0.0054 -2.3102 -1.4964 27 7 1.2884 -1.7250 -1.8772 28 1 -0.3932 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4678 -1.2086 32 1 3.8162 0.3027 -1.6004 33 1 5.3578 -0.0017 -3.2130 34 1 7.1532 1.1895 -4.2201 35 1 6.9364 1.0740 -6.0197 36 1 9.8326 1.2636 -4.8373 37 1 9.4419 0.2937 -3.3969 38 1 12.2541 0.8141 -5.5241 39 1 12.5452 -3.3102 -4.7794 40 1 7.8372 -2.4069 -4.7007 41 1 7.7885 -1.2623 -3.2904 42 1 1.2516 -2.7916 -4.8280 43 1 2.4632 -3.8735 -4.0937 44 1 0.0354 -4.7006 -3.9748 45 1 0.8943 -4.6274 -2.4166 46 1 -0.8593 -2.3705 -3.4809 47 1 -1.4533 -3.6396 -2.3835 48 1 0.1340 -2.9871 -0.6536 49 1 -0.6975 -1.5155 -1.2177 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_16915396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:29 Heat of formation + Delta-G solvation = 95.474105 kcal Electronic energy + Delta-G solvation = -31703.891435 eV Core-core repulsion = 27442.844150 eV Total energy + Delta-G solvation = -4261.047285 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.179 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.99282 -42.87684 -41.02412 -39.36801 -37.87085 -36.94275 -35.44495 -34.04384 -33.53000 -32.17033 -31.32830 -29.84173 -28.83042 -26.77403 -26.67866 -25.04898 -24.63770 -23.53336 -22.87046 -22.22719 -21.77769 -21.37840 -20.71559 -19.51864 -18.54550 -18.33309 -18.13305 -17.30296 -16.93723 -16.81941 -16.51436 -16.16554 -15.94508 -15.91430 -15.65497 -15.53330 -15.27968 -15.17975 -14.98853 -14.78799 -14.56995 -14.45915 -14.16096 -13.87919 -13.68172 -13.50574 -13.33890 -13.18367 -12.91808 -12.87146 -12.60290 -12.28006 -12.13370 -12.05151 -11.94700 -11.89458 -11.72784 -11.44554 -11.02836 -10.97470 -10.80271 -10.59004 -10.56213 -10.14827 -9.70214 -9.15170 -4.94198 0.57818 0.70020 0.94705 1.36685 1.44237 1.70439 1.76799 2.00392 2.07956 2.31605 2.37494 3.14584 3.27382 3.40579 3.47382 3.52885 3.54033 3.61135 3.68256 3.72088 3.74881 3.77787 3.91331 3.98134 4.10452 4.17064 4.22539 4.26010 4.30717 4.33330 4.44425 4.50151 4.54705 4.63098 4.65606 4.70127 4.73460 4.75208 4.79767 4.88610 4.91165 4.94783 4.99178 5.05877 5.14411 5.17572 5.33120 5.45187 5.51572 5.56958 5.92849 5.94436 6.11492 6.52798 6.83701 7.12828 7.21987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.054 4.054 3 Si 0.808 3.192 4 C 0.026 3.974 5 C -0.191 4.191 6 C -0.259 4.259 7 C 0.588 3.412 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.114 3.886 11 H 0.090 0.910 12 C -0.114 4.114 13 C -0.108 4.108 14 H 0.086 0.914 15 C 0.136 3.864 16 N -0.379 5.379 17 C 0.257 3.743 18 N -0.585 5.585 19 C 0.183 3.817 20 N -0.346 5.346 21 C -0.134 4.134 22 C 0.102 3.898 23 C -0.053 4.053 24 C -0.124 4.124 25 C -0.134 4.134 26 C 0.098 3.902 27 N -0.423 5.423 28 H 0.409 0.591 29 H 0.099 0.901 30 H -0.278 1.278 31 H -0.309 1.309 32 H 0.159 0.841 33 H 0.411 0.589 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.260 0.740 39 H 0.229 0.771 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.091 0.909 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 7.493 7.404 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.163 4.163 3 Si 0.712 3.288 4 C -0.084 4.084 5 C -0.214 4.214 6 C -0.268 4.268 7 C 0.378 3.622 8 O -0.470 6.470 9 N -0.355 5.355 10 C 0.009 3.991 11 H 0.108 0.892 12 C -0.153 4.153 13 C -0.127 4.127 14 H 0.105 0.895 15 C 0.015 3.985 16 N -0.170 5.170 17 C -0.039 4.039 18 N -0.313 5.313 19 C -0.119 4.119 20 N -0.174 5.174 21 C -0.173 4.173 22 C -0.017 4.017 23 C -0.091 4.091 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.021 4.021 27 N -0.098 5.098 28 H 0.262 0.738 29 H 0.117 0.883 30 H -0.204 1.204 31 H -0.238 1.238 32 H 0.176 0.824 33 H 0.247 0.753 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.164 0.836 37 H 0.116 0.884 38 H 0.276 0.724 39 H 0.246 0.754 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.131 0.869 48 H 0.110 0.890 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.903 6.634 6.184 10.310 hybrid contribution 0.308 -0.556 -0.289 0.698 sum -4.595 6.078 5.895 9.634 Atomic orbital electron populations 1.86315 1.16811 1.82430 1.51938 1.24648 0.86126 1.10973 0.94540 0.94484 0.77792 0.72215 0.84354 1.20331 0.94866 0.94048 0.99116 1.21804 0.99307 1.03184 0.97138 1.19982 0.98441 1.06142 1.02247 1.17594 0.81458 0.79938 0.83188 1.90728 1.80278 1.38466 1.37506 1.45633 1.20157 1.38146 1.31591 1.22562 0.85052 0.99163 0.92358 0.89185 1.23297 0.91802 0.95226 1.04951 1.22468 0.93301 0.97406 0.99567 0.89532 1.22196 0.80572 0.93319 1.02378 1.50766 1.13493 1.06080 1.46672 1.26929 0.81829 1.01531 0.93609 1.70548 1.34780 0.99383 1.26580 1.26440 0.88580 1.00455 0.96455 1.78026 1.21144 0.92102 1.26121 1.23464 0.94847 0.98571 1.00442 1.20663 0.91670 0.98343 0.91042 1.20455 0.99647 0.93429 0.95580 1.21715 0.95248 0.97870 1.01317 1.21981 0.99487 0.98699 0.96937 1.22535 0.81622 0.99419 0.98524 1.44131 1.18090 1.26831 1.20782 0.73808 0.88315 1.20426 1.23750 0.82373 0.75284 0.86589 0.89039 0.83631 0.88363 0.72398 0.75450 0.93657 0.89289 0.90204 0.90146 0.88989 0.91267 0.91479 0.86911 0.89047 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.21 9.97 -148.98 -1.49 1.73 16 2 C -0.05 0.20 2.99 71.23 0.21 0.41 16 3 Si 0.81 -4.40 31.22 68.60 2.14 -2.26 16 4 C 0.03 0.12 6.18 40.99 0.25 0.38 16 5 C -0.19 -1.17 9.09 23.64 0.21 -0.95 16 6 C -0.26 -2.80 6.28 -19.12 -0.12 -2.92 16 7 C 0.59 7.35 7.81 86.62 0.68 8.03 16 8 O -0.59 -11.38 14.93 -4.11 -0.06 -11.44 16 9 N -0.71 -3.36 5.36 -443.01 -2.37 -5.73 16 10 C 0.11 0.34 4.25 45.61 0.19 0.53 16 11 H 0.09 0.77 7.46 -2.39 -0.02 0.75 16 12 C -0.11 0.65 7.39 31.12 0.23 0.88 16 13 C -0.11 0.34 3.85 -10.27 -0.04 0.30 16 14 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 15 C 0.14 -0.89 6.39 86.37 0.55 -0.34 16 16 N -0.38 -0.39 3.69 -352.06 -1.30 -1.69 16 17 C 0.26 -0.03 12.63 180.36 2.28 2.25 16 18 N -0.58 -4.21 11.19 -204.00 -2.28 -6.49 16 19 C 0.18 1.31 13.03 180.77 2.36 3.66 16 20 N -0.35 -2.75 12.57 -61.25 -0.77 -3.52 16 21 C -0.13 -0.37 7.44 31.21 0.23 -0.13 16 22 C 0.10 0.99 6.57 41.69 0.27 1.26 16 23 C -0.05 -0.40 5.33 30.08 0.16 -0.24 16 24 C -0.12 -0.09 5.97 30.78 0.18 0.09 16 25 C -0.13 0.24 5.94 30.77 0.18 0.42 16 26 C 0.10 -0.01 6.22 86.41 0.54 0.52 16 27 N -0.42 -2.46 3.11 -493.17 -1.53 -3.99 16 28 H 0.41 -6.62 8.74 -74.06 -0.65 -7.27 16 29 H 0.10 -0.74 7.96 -2.39 -0.02 -0.76 16 30 H -0.28 0.49 6.88 99.48 0.68 1.17 16 31 H -0.31 -1.31 7.11 99.48 0.71 -0.60 16 32 H 0.16 0.24 6.37 -2.91 -0.02 0.23 16 33 H 0.41 -0.25 7.85 -92.71 -0.73 -0.98 16 34 H 0.12 -1.20 8.08 -2.39 -0.02 -1.22 16 35 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.15 -2.11 8.09 -2.39 -0.02 -2.13 16 37 H 0.10 -0.73 7.84 -2.39 -0.02 -0.75 16 38 H 0.26 -2.80 8.06 -2.91 -0.02 -2.82 16 39 H 0.23 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.09 0.17 7.90 -2.39 -0.02 0.15 16 42 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.08 0.89 7.39 -2.39 -0.02 0.88 16 44 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.07 0.06 8.12 -2.38 -0.02 0.04 16 46 H 0.07 0.01 8.11 -2.39 -0.02 -0.01 16 47 H 0.11 -0.73 8.14 -2.38 -0.02 -0.75 16 48 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.12 -0.12 5.94 -2.39 -0.01 -0.14 16 Total: 0.00 -33.40 396.34 0.34 -33.05 By element: Atomic # 1 Polarization: -13.46 SS G_CDS: -0.37 Total: -13.82 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 8.38 Total: 14.16 kcal Atomic # 7 Polarization: -13.16 SS G_CDS: -8.26 Total: -21.42 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.55 Total: -9.72 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.14 Total: -2.26 kcal Total: -33.40 0.34 -33.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_16915396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.529 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds