Wall clock time and date at job start Sun Mar 7 2021 00:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86304 * 109.47117 * 2 1 4 4 C 1.50696 * 109.47300 * 119.99708 * 2 1 3 5 5 C 1.38708 * 120.02796 * 74.99985 * 4 2 1 6 6 O 1.35900 * 120.05751 * 359.96075 * 5 4 2 7 7 C 1.42894 * 117.00370 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47583 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99341 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00405 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99941 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.85296 * 25.33028 * 11 10 8 13 13 C 1.53780 * 113.61420 * 156.52454 * 11 10 8 14 14 C 1.53785 * 87.08121 * 139.97932 * 13 11 10 15 15 H 1.08994 * 113.61624 * 89.11610 * 14 13 11 16 16 C 1.53003 * 113.61239 * 220.02230 * 14 13 11 17 17 N 1.46505 * 109.46504 * 184.99920 * 16 14 13 18 18 C 1.34430 * 126.82053 * 125.00516 * 17 16 14 19 19 N 1.30831 * 108.07699 * 179.97438 * 18 17 16 20 20 C 1.33238 * 109.82761 * 359.97438 * 19 18 17 21 21 N 1.30717 * 108.95048 * 359.75611 * 20 19 18 22 22 C 1.53787 * 113.61293 * 254.13135 * 11 10 8 23 23 C 1.38759 * 119.89010 * 179.97438 * 5 4 2 24 24 C 1.38119 * 119.94381 * 0.02562 * 23 5 4 25 25 C 1.38295 * 120.05704 * 359.97438 * 24 23 5 26 26 C 1.38171 * 120.03158 * 254.95817 * 4 2 1 27 27 H 0.96696 * 114.00465 * 300.00120 * 1 2 3 28 28 H 1.09001 * 109.47469 * 240.00199 * 2 1 3 29 29 H 1.48501 * 110.00015 * 178.68410 * 3 2 1 30 30 H 1.48504 * 109.99607 * 299.99482 * 3 2 1 31 31 H 1.09001 * 109.47181 * 300.00095 * 7 6 5 32 32 H 1.08998 * 109.47333 * 59.99666 * 7 6 5 33 33 H 0.97002 * 119.99581 * 359.97438 * 10 8 7 34 34 H 1.08993 * 113.61445 * 254.52430 * 13 11 10 35 35 H 1.09006 * 113.61149 * 25.35055 * 13 11 10 36 36 H 1.08996 * 109.47213 * 304.99587 * 16 14 13 37 37 H 1.08998 * 109.47190 * 64.99924 * 16 14 13 38 38 H 1.07999 * 125.96172 * 359.91583 * 18 17 16 39 39 H 1.07999 * 125.52782 * 180.02562 * 20 19 18 40 40 H 1.09004 * 113.61074 * 334.57099 * 22 11 10 41 41 H 1.09000 * 113.61278 * 105.46666 * 22 11 10 42 42 H 1.08001 * 120.03003 * 179.97438 * 23 5 4 43 43 H 1.07997 * 119.97310 * 179.97438 * 24 23 5 44 44 H 1.07995 * 119.94657 * 179.74935 * 25 24 23 45 45 H 1.08005 * 119.97011 * 0.04236 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.8696 -2.0939 1.3070 6 8 1.3555 -2.8106 0.2731 7 6 1.3229 -4.2315 0.4215 8 6 0.7241 -4.8520 -0.8144 9 8 0.3607 -4.1468 -1.7317 10 7 0.5916 -6.1905 -0.8999 11 6 0.0101 -6.7938 -2.1016 12 1 0.1283 -6.1703 -2.9879 13 6 0.4261 -8.2582 -2.3188 14 6 -1.0231 -8.5221 -2.7606 15 1 -1.1888 -8.3715 -3.8272 16 6 -1.5865 -9.8507 -2.2521 17 7 -2.9197 -10.0651 -2.8203 18 6 -3.3351 -11.1358 -3.5190 19 7 -4.5869 -10.9451 -3.8482 20 6 -5.0035 -9.7696 -3.3791 21 7 -4.0197 -9.1958 -2.7376 22 6 -1.4240 -7.3108 -1.8990 23 6 2.3335 -2.7451 2.4411 24 6 2.8548 -2.0144 3.4909 25 6 2.9152 -0.6350 3.4122 26 6 2.4545 0.0160 2.2830 27 1 -0.3934 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5345 1.7703 0.0320 30 1 1.5614 2.4678 -1.2086 31 1 2.3371 -4.6056 0.5614 32 1 0.7166 -4.4924 1.2888 33 1 0.8820 -6.7545 -0.1660 34 1 1.1567 -8.3908 -3.1167 35 1 0.7045 -8.7739 -1.3997 36 1 -0.9275 -10.6644 -2.5547 37 1 -1.6550 -9.8239 -1.1646 38 1 -2.7392 -12.0019 -3.7663 39 1 -5.9947 -9.3595 -3.5045 40 1 -1.6536 -7.5674 -0.8648 41 1 -2.1847 -6.6796 -2.3584 42 1 2.2862 -3.8222 2.5033 43 1 3.2156 -2.5207 4.3740 44 1 3.3194 -0.0652 4.2357 45 1 2.5027 1.0933 2.2239 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:33 Heat of formation + Delta-G solvation = 50.548723 kcal Electronic energy + Delta-G solvation = -28856.086567 eV Core-core repulsion = 24650.910128 eV Total energy + Delta-G solvation = -4205.176439 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.98618 -41.70328 -41.03754 -39.67820 -38.43592 -37.49825 -35.53735 -34.13842 -32.73058 -32.16763 -31.29238 -29.88729 -28.58205 -26.77468 -26.69175 -24.71483 -23.45109 -22.86870 -22.64055 -22.34471 -21.71070 -20.72081 -19.50557 -18.50445 -18.18854 -18.02855 -17.53575 -17.32822 -16.88635 -16.76054 -16.58579 -16.13917 -15.98207 -15.74936 -15.52678 -15.39006 -15.06508 -15.01228 -14.90393 -14.52389 -14.22774 -13.82341 -13.72842 -13.53483 -13.47408 -13.18444 -13.02564 -12.91426 -12.38639 -12.28233 -12.18419 -12.09640 -11.96721 -11.77857 -11.45685 -11.05082 -10.97897 -10.80147 -10.58051 -10.39886 -10.19074 -9.96300 -9.22334 -5.07273 0.24104 0.41529 0.70051 1.26860 1.35439 1.43054 1.50679 1.60372 1.93732 2.00547 2.57699 2.71189 3.27464 3.38735 3.46802 3.53341 3.53989 3.63280 3.70448 3.74765 3.87639 3.90567 3.95903 4.02447 4.11132 4.12220 4.17402 4.30103 4.31672 4.35910 4.52302 4.55773 4.64095 4.67353 4.68483 4.76864 4.93169 4.97586 5.00834 5.10353 5.28451 5.32725 5.38279 5.44795 5.46969 5.53229 5.76952 5.95491 6.25929 6.43540 6.79472 7.07935 7.13162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.075 4.075 3 Si 0.797 3.203 4 C -0.172 4.172 5 C 0.124 3.876 6 O -0.317 6.317 7 C 0.037 3.963 8 C 0.510 3.490 9 O -0.576 6.576 10 N -0.696 5.696 11 C 0.113 3.887 12 H 0.083 0.917 13 C -0.108 4.108 14 C -0.112 4.112 15 H 0.081 0.919 16 C 0.135 3.865 17 N -0.380 5.380 18 C 0.257 3.743 19 N -0.586 5.586 20 C 0.183 3.817 21 N -0.346 5.346 22 C -0.137 4.137 23 C -0.213 4.213 24 C -0.076 4.076 25 C -0.153 4.153 26 C -0.079 4.079 27 H 0.391 0.609 28 H 0.077 0.923 29 H -0.280 1.280 30 H -0.304 1.304 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.423 0.577 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.261 0.739 39 H 0.228 0.772 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -5.883 9.488 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.183 4.183 3 Si 0.701 3.299 4 C -0.173 4.173 5 C 0.078 3.922 6 O -0.230 6.230 7 C -0.040 4.040 8 C 0.296 3.704 9 O -0.454 6.454 10 N -0.350 5.350 11 C 0.008 3.992 12 H 0.101 0.899 13 C -0.147 4.147 14 C -0.132 4.132 15 H 0.099 0.901 16 C 0.015 3.985 17 N -0.170 5.170 18 C -0.039 4.039 19 N -0.314 5.314 20 C -0.120 4.120 21 N -0.174 5.174 22 C -0.176 4.176 23 C -0.232 4.232 24 C -0.094 4.094 25 C -0.171 4.171 26 C -0.096 4.096 27 H 0.240 0.760 28 H 0.095 0.905 29 H -0.207 1.207 30 H -0.233 1.233 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.262 0.738 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.244 0.756 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.173 0.827 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.837 -4.571 7.898 11.403 hybrid contribution -0.117 -0.881 -0.457 0.999 sum 6.720 -5.452 7.441 11.413 Atomic orbital electron populations 1.86543 1.17810 1.82202 1.50002 1.25211 0.85084 1.11337 0.96687 0.94029 0.77584 0.73701 0.84566 1.19853 1.07033 0.91565 0.98876 1.19135 0.94344 0.91233 0.87452 1.86192 1.78085 1.18784 1.39934 1.22712 1.04427 0.79930 0.96975 1.20664 0.78137 0.83361 0.88239 1.90780 1.50385 1.62690 1.41569 1.45633 1.63205 1.05316 1.20833 1.22516 0.94075 0.94505 0.88115 0.89931 1.23290 0.94948 0.92122 1.04293 1.22523 0.97165 0.93740 0.99760 0.90063 1.22227 0.76928 0.99537 0.99795 1.50790 1.11296 1.14054 1.40904 1.26931 0.92050 0.93911 0.91042 1.70538 1.12260 1.19709 1.28876 1.26426 1.00551 0.90267 0.94763 1.78020 0.95615 1.17977 1.25772 1.23482 0.96018 0.97049 1.01005 1.21588 1.05710 1.01815 0.94050 1.21421 0.95451 0.94345 0.98138 1.21462 1.01840 0.95040 0.98790 1.21116 0.96171 1.00168 0.92148 0.76019 0.90488 1.20676 1.23303 0.85812 0.86064 0.73786 0.89063 0.85530 0.83590 0.87951 0.72368 0.75570 0.88491 0.94205 0.82852 0.82769 0.82712 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.36 12.88 -148.98 -1.92 -7.28 16 2 C -0.07 -0.58 2.38 71.23 0.17 -0.41 16 3 Si 0.80 1.65 29.92 68.60 2.05 3.70 16 4 C -0.17 -0.85 5.27 -19.77 -0.10 -0.95 16 5 C 0.12 0.68 6.66 22.51 0.15 0.83 16 6 O -0.32 -3.03 9.00 -73.39 -0.66 -3.69 16 7 C 0.04 -0.02 5.22 71.24 0.37 0.35 16 8 C 0.51 2.74 7.91 87.66 0.69 3.43 16 9 O -0.58 -10.76 16.12 16.00 0.26 -10.50 16 10 N -0.70 2.55 5.36 -440.03 -2.36 0.19 16 11 C 0.11 -0.18 4.21 45.52 0.19 0.01 16 12 H 0.08 0.48 7.50 -2.39 -0.02 0.46 16 13 C -0.11 1.12 7.39 31.12 0.23 1.35 16 14 C -0.11 0.67 3.86 -10.21 -0.04 0.63 16 15 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 16 C 0.14 -1.26 6.39 86.38 0.55 -0.70 16 17 N -0.38 0.24 3.69 -352.05 -1.30 -1.06 16 18 C 0.26 -0.34 12.63 180.36 2.28 1.94 16 19 N -0.59 -3.71 11.19 -204.00 -2.28 -5.99 16 20 C 0.18 1.15 13.03 180.76 2.36 3.51 16 21 N -0.35 -2.31 12.58 -61.25 -0.77 -3.08 16 22 C -0.14 0.09 7.45 31.18 0.23 0.32 16 23 C -0.21 0.30 9.04 22.37 0.20 0.50 16 24 C -0.08 0.29 10.04 22.25 0.22 0.52 16 25 C -0.15 0.56 10.04 22.28 0.22 0.78 16 26 C -0.08 0.09 8.66 22.25 0.19 0.28 16 27 H 0.39 -0.20 8.70 -74.06 -0.64 -0.85 16 28 H 0.08 1.07 7.83 -2.39 -0.02 1.05 16 29 H -0.28 -1.58 7.11 99.48 0.71 -0.88 16 30 H -0.30 -3.10 7.11 99.48 0.71 -2.40 16 31 H 0.12 -0.93 7.66 -2.39 -0.02 -0.95 16 32 H 0.12 -0.82 7.66 -2.39 -0.02 -0.84 16 33 H 0.42 -5.37 8.71 -92.71 -0.81 -6.18 16 34 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.13 -2.10 8.07 -2.38 -0.02 -2.12 16 36 H 0.15 -2.51 8.09 -2.39 -0.02 -2.53 16 37 H 0.10 -1.12 7.85 -2.39 -0.02 -1.13 16 38 H 0.26 -3.13 8.06 -2.91 -0.02 -3.16 16 39 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.10 -0.27 7.90 -2.38 -0.02 -0.29 16 41 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.15 -1.17 6.30 -2.91 -0.02 -1.19 16 43 H 0.15 -1.44 8.06 -2.91 -0.02 -1.47 16 44 H 0.16 -1.37 8.06 -2.91 -0.02 -1.40 16 45 H 0.16 -1.04 5.13 -2.91 -0.01 -1.05 16 Total: 0.00 -41.43 383.17 0.57 -40.87 By element: Atomic # 1 Polarization: -25.17 SS G_CDS: -0.37 Total: -25.54 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 7.92 Total: 12.39 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -6.71 Total: -9.94 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -2.32 Total: -21.47 kcal Atomic # 14 Polarization: 1.65 SS G_CDS: 2.05 Total: 3.70 kcal Total: -41.43 0.57 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.414 kcal (2) G-P(sol) polarization free energy of solvation -41.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds