Wall clock time and date at job start Sun Mar 7 2021 00:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.46808 * 2 1 4 4 C 1.50694 * 109.47458 * 240.00429 * 2 1 3 5 5 C 1.38268 * 119.94062 * 299.99736 * 4 2 1 6 6 C 1.38151 * 120.05722 * 179.97438 * 5 4 2 7 7 C 1.38734 * 119.94011 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05483 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00017 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46838 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00269 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99932 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99985 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.85221 * 334.67013 * 13 12 10 15 15 C 1.53785 * 113.68813 * 105.94035 * 13 12 10 16 16 C 1.53779 * 87.08093 * 139.99098 * 15 13 12 17 17 H 1.09003 * 113.61186 * 89.11185 * 16 15 13 18 18 C 1.52999 * 113.61451 * 220.01770 * 16 15 13 19 19 N 1.46504 * 109.47047 * 272.49902 * 18 16 15 20 20 C 1.34431 * 126.82305 * 124.99674 * 19 18 16 21 21 N 1.30828 * 108.07547 * 179.97438 * 20 19 18 22 22 C 1.33243 * 109.83112 * 0.02562 * 21 20 19 23 23 N 1.30718 * 108.94594 * 359.74983 * 22 21 20 24 24 C 1.53781 * 113.61339 * 203.47543 * 13 12 10 25 25 C 1.38729 * 119.88922 * 0.27311 * 7 6 5 26 26 C 1.38146 * 119.94570 * 359.47440 * 25 7 6 27 27 H 0.96696 * 114.00393 * 60.00055 * 1 2 3 28 28 H 1.09000 * 109.47467 * 119.99960 * 2 1 3 29 29 H 1.48495 * 110.00029 * 298.68072 * 3 2 1 30 30 H 1.48503 * 110.00070 * 60.00142 * 3 2 1 31 31 H 1.08001 * 119.97673 * 359.97422 * 5 4 2 32 32 H 1.07995 * 120.02687 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47351 * 60.00259 * 9 8 7 34 34 H 1.08994 * 109.47217 * 299.99197 * 9 8 7 35 35 H 0.96998 * 119.99866 * 0.02562 * 12 10 9 36 36 H 1.09003 * 113.60734 * 254.54218 * 15 13 12 37 37 H 1.08996 * 113.61146 * 25.43716 * 15 13 12 38 38 H 1.09003 * 109.47100 * 32.49589 * 18 16 15 39 39 H 1.08995 * 109.47213 * 152.50009 * 18 16 15 40 40 H 1.08001 * 125.96200 * 0.02562 * 20 19 18 41 41 H 1.08001 * 125.52857 * 179.97438 * 22 21 20 42 42 H 1.09005 * 113.61302 * 334.48230 * 24 13 12 43 43 H 1.08996 * 113.61527 * 105.30394 * 24 13 12 44 44 H 1.08001 * 120.02500 * 179.72364 * 25 7 6 45 45 H 1.08000 * 119.97299 * 180.27297 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.5967 -2.0341 -1.4481 6 6 2.0555 -2.6874 -2.5756 7 6 2.8523 -2.0139 -3.4901 8 8 3.3045 -2.6542 -4.6002 9 6 4.1196 -1.8984 -5.4982 10 6 4.5242 -2.7672 -6.6613 11 8 4.1510 -3.9198 -6.7160 12 7 5.3001 -2.2629 -7.6412 13 6 5.6940 -3.1076 -8.7715 14 1 5.6965 -4.1695 -8.5257 15 6 4.9503 -2.7791 -10.0769 16 6 6.2885 -2.9983 -10.8022 17 1 6.4535 -4.0304 -11.1115 18 6 6.5498 -1.9913 -11.9240 19 7 5.9555 -2.4828 -13.1696 20 6 5.0757 -1.8353 -13.9531 21 7 4.7897 -2.6094 -14.9683 22 6 5.4639 -3.7542 -14.8677 23 7 6.1957 -3.7222 -13.7851 24 6 6.9769 -2.6353 -9.4758 25 6 3.1909 -0.6872 -3.2667 26 6 2.7252 -0.0369 -2.1404 27 1 -0.3934 0.4417 -0.7650 28 1 1.7924 -0.5138 0.8900 29 1 1.5878 2.4586 -1.2242 30 1 1.5614 2.4679 1.2085 31 1 0.9760 -2.5578 -0.7362 32 1 1.7935 -3.7212 -2.7453 33 1 5.0115 -1.5527 -4.9759 34 1 3.5570 -1.0397 -5.8643 35 1 5.5984 -1.3409 -7.5976 36 1 4.1861 -3.5105 -10.3399 37 1 4.5895 -1.7518 -10.1272 38 1 6.1034 -1.0319 -11.6623 39 1 7.6243 -1.8676 -12.0582 40 1 4.6756 -0.8479 -13.7759 41 1 5.4165 -4.5741 -15.5691 42 1 7.1702 -1.5686 -9.3618 43 1 7.8490 -3.2497 -9.2524 44 1 3.8147 -0.1621 -3.9749 45 1 2.9849 0.9972 -1.9683 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:37 Heat of formation + Delta-G solvation = 50.293294 kcal Electronic energy + Delta-G solvation = -28141.023469 eV Core-core repulsion = 23935.835954 eV Total energy + Delta-G solvation = -4205.187515 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.98086 -41.63712 -40.98769 -39.73973 -38.87994 -37.23755 -35.50696 -34.10796 -32.39254 -32.16305 -31.74049 -30.03813 -28.63178 -26.76045 -26.25534 -24.68219 -23.84663 -22.93651 -22.62495 -22.17950 -21.69952 -20.54568 -19.50828 -18.59471 -18.31317 -18.09613 -17.45042 -17.38264 -16.87663 -16.65043 -16.35434 -16.26059 -16.13184 -15.75440 -15.58936 -15.53905 -15.10897 -14.97619 -14.61910 -14.46641 -14.37193 -13.75062 -13.69651 -13.54691 -13.48143 -13.42984 -13.19094 -12.71374 -12.42609 -12.27719 -12.13686 -12.05609 -11.88450 -11.62819 -11.54057 -11.03817 -10.95725 -10.79173 -10.58766 -10.51769 -10.14781 -10.03598 -9.23446 -4.89965 0.27331 0.31043 0.70696 1.34624 1.40618 1.45188 1.51794 1.62388 1.99980 2.01418 2.60023 2.65092 3.35710 3.43907 3.45236 3.46994 3.54255 3.56334 3.72728 3.75426 3.83266 3.89261 3.95077 4.04102 4.11230 4.14864 4.18016 4.31336 4.38813 4.43037 4.52371 4.56240 4.68371 4.69700 4.74015 4.78463 4.92092 4.97429 5.02503 5.16016 5.17013 5.25507 5.31711 5.45428 5.49581 5.50813 5.70043 5.96829 6.26897 6.48039 6.51098 7.13657 7.13811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.084 4.084 3 Si 0.774 3.226 4 C -0.159 4.159 5 C -0.061 4.061 6 C -0.168 4.168 7 C 0.121 3.879 8 O -0.323 6.323 9 C 0.036 3.964 10 C 0.510 3.490 11 O -0.579 6.579 12 N -0.694 5.694 13 C 0.117 3.883 14 H 0.081 0.919 15 C -0.143 4.143 16 C -0.118 4.118 17 H 0.077 0.923 18 C 0.136 3.864 19 N -0.377 5.377 20 C 0.257 3.743 21 N -0.587 5.587 22 C 0.185 3.815 23 N -0.352 5.352 24 C -0.112 4.112 25 C -0.198 4.198 26 C -0.075 4.075 27 H 0.386 0.614 28 H 0.120 0.880 29 H -0.277 1.277 30 H -0.309 1.309 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.426 0.574 36 H 0.040 0.960 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.102 0.898 40 H 0.260 0.740 41 H 0.230 0.770 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.168 0.832 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 10.581 0.571 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.192 4.192 3 Si 0.679 3.321 4 C -0.159 4.159 5 C -0.079 4.079 6 C -0.187 4.187 7 C 0.076 3.924 8 O -0.236 6.236 9 C -0.041 4.041 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.012 3.988 14 H 0.099 0.901 15 C -0.181 4.181 16 C -0.138 4.138 17 H 0.095 0.905 18 C 0.016 3.984 19 N -0.168 5.168 20 C -0.039 4.039 21 N -0.315 5.315 22 C -0.117 4.117 23 N -0.180 5.180 24 C -0.150 4.150 25 C -0.216 4.216 26 C -0.092 4.092 27 H 0.235 0.765 28 H 0.138 0.862 29 H -0.203 1.203 30 H -0.237 1.237 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.265 0.735 36 H 0.059 0.941 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.120 0.880 40 H 0.276 0.724 41 H 0.246 0.754 42 H 0.149 0.851 43 H 0.100 0.900 44 H 0.185 0.815 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.540 9.604 1.064 11.668 hybrid contribution -1.339 -0.416 -0.486 1.484 sum 5.201 9.188 0.577 10.573 Atomic orbital electron populations 1.86568 1.18874 1.80419 1.50173 1.25271 0.83230 1.12190 0.98531 0.94144 0.90069 0.71472 0.76392 1.20297 1.02107 0.95108 0.98428 1.20897 0.97172 0.94121 0.95733 1.20617 1.01695 1.01227 0.95180 1.19214 0.94639 0.92089 0.86495 1.86135 1.65282 1.40464 1.31716 1.22789 0.97887 0.94144 0.89325 1.20693 0.78206 0.87500 0.83915 1.90776 1.55574 1.20650 1.78749 1.45609 1.51209 1.16548 1.21486 1.22399 0.96843 0.95575 0.84018 0.90074 1.23595 0.96353 1.03239 0.94936 1.22533 0.97410 0.99875 0.93962 0.90458 1.22241 1.00692 0.98012 0.77491 1.50759 1.33575 1.11671 1.20802 1.26896 0.89894 1.00606 0.86525 1.70536 1.29447 1.05084 1.26410 1.26425 0.92444 0.97323 0.95539 1.77956 1.25951 1.02262 1.11863 1.23311 0.95742 1.04636 0.91335 1.21511 1.05720 0.93104 1.01298 1.21080 0.95262 1.00216 0.92646 0.76532 0.86199 1.20319 1.23728 0.85061 0.85848 0.85154 0.85448 0.73532 0.94133 0.86646 0.83666 0.87992 0.72429 0.75418 0.85108 0.90011 0.81452 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.32 12.77 -148.98 -1.90 -3.22 16 2 C -0.08 0.12 2.82 71.23 0.20 0.32 16 3 Si 0.77 -3.19 29.78 68.60 2.04 -1.14 16 4 C -0.16 0.13 5.39 -19.85 -0.11 0.02 16 5 C -0.06 -0.14 9.60 22.26 0.21 0.07 16 6 C -0.17 -0.73 9.99 22.37 0.22 -0.51 16 7 C 0.12 0.26 6.69 22.51 0.15 0.41 16 8 O -0.32 -1.51 9.67 -73.41 -0.71 -2.22 16 9 C 0.04 -0.21 5.22 71.24 0.37 0.17 16 10 C 0.51 0.30 7.91 87.66 0.69 1.00 16 11 O -0.58 -8.08 16.12 16.01 0.26 -7.83 16 12 N -0.69 5.60 5.36 -440.02 -2.36 3.24 16 13 C 0.12 -0.57 4.22 45.52 0.19 -0.38 16 14 H 0.08 0.26 7.50 -2.39 -0.02 0.24 16 15 C -0.14 0.82 7.43 31.12 0.23 1.05 16 16 C -0.12 0.84 3.88 -10.27 -0.04 0.80 16 17 H 0.08 0.01 8.01 -2.39 -0.02 -0.01 16 18 C 0.14 -1.39 6.39 86.38 0.55 -0.84 16 19 N -0.38 0.54 3.69 -352.05 -1.30 -0.76 16 20 C 0.26 -0.52 12.63 180.36 2.28 1.76 16 21 N -0.59 -3.34 11.19 -204.00 -2.28 -5.63 16 22 C 0.19 1.02 13.03 180.76 2.36 3.38 16 23 N -0.35 -2.11 12.46 -61.24 -0.76 -2.88 16 24 C -0.11 1.30 7.39 31.12 0.23 1.53 16 25 C -0.20 0.88 9.04 22.37 0.20 1.08 16 26 C -0.07 0.32 8.66 22.25 0.19 0.52 16 27 H 0.39 -1.28 8.70 -74.06 -0.64 -1.92 16 28 H 0.12 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H -0.28 0.39 7.11 99.48 0.71 1.10 16 30 H -0.31 -1.40 7.11 99.48 0.71 -0.70 16 31 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.12 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.13 -1.68 7.65 -2.39 -0.02 -1.70 16 34 H 0.13 -1.60 7.67 -2.39 -0.02 -1.62 16 35 H 0.43 -7.41 8.71 -92.71 -0.81 -8.22 16 36 H 0.04 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.12 -1.30 7.90 -2.39 -0.02 -1.32 16 38 H 0.15 -2.71 7.79 -2.39 -0.02 -2.73 16 39 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 40 H 0.26 -3.32 8.06 -2.91 -0.02 -3.34 16 41 H 0.23 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.13 -2.46 8.07 -2.38 -0.02 -2.48 16 43 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.17 -2.09 6.30 -2.91 -0.02 -2.11 16 45 H 0.16 -1.49 4.87 -2.91 -0.01 -1.50 16 Total: 0.00 -38.31 383.33 0.55 -37.76 By element: Atomic # 1 Polarization: -27.34 SS G_CDS: -0.37 Total: -27.71 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 7.94 Total: 10.37 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -6.71 Total: -6.02 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -2.35 Total: -13.27 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.04 Total: -1.14 kcal Total: -38.31 0.55 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.057 kcal (2) G-P(sol) polarization free energy of solvation -38.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds