Wall clock time and date at job start Sun Mar 7 2021 00:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86295 * 109.47183 * 2 1 4 4 C 1.50700 * 109.47044 * 240.00366 * 2 1 3 5 5 C 1.38267 * 119.94496 * 299.99773 * 4 2 1 6 6 C 1.38145 * 120.05730 * 179.97438 * 5 4 2 7 7 C 1.38729 * 119.94319 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05330 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99747 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46992 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47137 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99922 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99749 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99525 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.91148 * 23.75262 * 14 13 11 16 16 C 1.53786 * 113.61370 * 155.00031 * 14 13 11 17 17 C 1.53781 * 87.17350 * 140.02367 * 16 14 13 18 18 H 1.09003 * 113.61462 * 89.16045 * 17 16 14 19 19 C 1.52991 * 113.61529 * 219.97788 * 17 16 14 20 20 N 1.46508 * 109.47429 * 184.99923 * 19 17 16 21 21 C 1.34426 * 126.81984 * 124.70705 * 20 19 17 22 22 N 1.30840 * 108.07312 * 179.89701 * 21 20 19 23 23 C 1.33244 * 109.82711 * 0.38357 * 22 21 20 24 24 N 1.30709 * 108.94622 * 359.76066 * 23 22 21 25 25 C 1.53781 * 87.08070 * 334.52830 * 17 16 14 26 26 C 1.38728 * 119.89025 * 0.27174 * 7 6 5 27 27 C 1.38149 * 119.94194 * 359.47309 * 26 7 6 28 28 H 0.96703 * 113.99669 * 299.98927 * 1 2 3 29 29 H 1.08999 * 109.47345 * 120.00141 * 2 1 3 30 30 H 1.48500 * 110.00383 * 178.68401 * 3 2 1 31 31 H 1.48504 * 110.00250 * 300.00506 * 3 2 1 32 32 H 1.08004 * 119.96909 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.02567 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47316 * 60.00363 * 9 8 7 35 35 H 1.09000 * 109.46899 * 299.99898 * 9 8 7 36 36 H 1.09001 * 109.47498 * 60.00193 * 10 9 8 37 37 H 1.09005 * 109.47129 * 299.99946 * 10 9 8 38 38 H 0.97000 * 119.99938 * 359.97438 * 13 11 10 39 39 H 1.09002 * 113.61357 * 25.43283 * 16 14 13 40 40 H 1.09002 * 113.61608 * 254.61445 * 16 14 13 41 41 H 1.08997 * 109.47550 * 304.99814 * 19 17 16 42 42 H 1.09002 * 109.47334 * 65.00084 * 19 17 16 43 43 H 1.07996 * 125.96554 * 0.04585 * 21 20 19 44 44 H 1.07996 * 125.52605 * 179.73024 * 23 22 21 45 45 H 1.09005 * 113.61471 * 139.98321 * 25 17 16 46 46 H 1.08996 * 113.61178 * 270.79663 * 25 17 16 47 47 H 1.08003 * 120.02865 * 179.72587 * 26 7 6 48 48 H 1.07997 * 119.96926 * 180.23528 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.5966 -2.0341 -1.4482 6 6 2.0554 -2.6873 -2.5757 7 6 2.8530 -2.0142 -3.4896 8 8 3.3059 -2.6548 -4.5993 9 6 4.1219 -1.8993 -5.4969 10 6 4.5325 -2.7812 -6.6778 11 6 5.3936 -1.9847 -7.6240 12 8 5.6528 -0.8257 -7.3783 13 7 5.8755 -2.5604 -8.7433 14 6 6.7120 -1.7860 -9.6634 15 1 7.2081 -0.9445 -9.1797 16 6 7.6564 -2.6516 -10.5142 17 6 7.3316 -1.7153 -11.6901 18 1 7.9977 -0.8553 -11.7604 19 6 7.1596 -2.4440 -13.0243 20 7 6.9728 -1.4629 -14.0962 21 6 7.6996 -1.3509 -15.2215 22 7 7.2161 -0.3556 -15.9196 23 6 6.1903 0.1948 -15.2714 24 7 6.0028 -0.4487 -14.1493 25 6 6.0028 -1.4111 -10.9785 26 6 3.1925 -0.6879 -3.2658 27 6 2.7268 -0.0375 -2.1394 28 1 -0.3933 0.4416 0.7652 29 1 1.7924 -0.5138 0.8899 30 1 3.5346 1.7703 0.0320 31 1 1.5614 2.4679 -1.2084 32 1 0.9753 -2.5576 -0.7366 33 1 1.7940 -3.7215 -2.7451 34 1 5.0135 -1.5536 -4.9738 35 1 3.5597 -1.0405 -5.8634 36 1 3.6407 -3.1266 -7.2008 37 1 5.0945 -3.6404 -6.3115 38 1 5.6684 -3.4875 -8.9396 39 1 7.3022 -3.6723 -10.6581 40 1 8.6974 -2.6059 -10.1944 41 1 8.0481 -3.0413 -13.2293 42 1 6.2876 -3.0960 -12.9725 43 1 8.5351 -1.9752 -15.5017 44 1 5.6085 1.0365 -15.6169 45 1 5.7084 -0.3629 -11.0326 46 1 5.1961 -2.0918 -11.2505 47 1 3.8169 -0.1630 -3.9736 48 1 2.9877 0.9961 -1.9667 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:40 Heat of formation + Delta-G solvation = 42.784658 kcal Electronic energy + Delta-G solvation = -29791.938340 eV Core-core repulsion = 25430.887607 eV Total energy + Delta-G solvation = -4361.050733 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.99302 -41.57585 -41.17625 -39.75614 -39.09933 -37.26368 -35.51458 -34.19288 -33.33522 -32.20031 -32.17056 -31.61823 -29.09511 -26.79437 -26.72666 -25.82932 -24.43757 -23.52487 -22.87659 -22.39920 -22.07984 -21.61651 -20.66836 -19.64124 -18.40265 -18.36499 -18.02232 -17.58838 -17.43007 -17.17893 -16.80913 -16.73846 -16.21434 -16.12253 -15.89241 -15.69124 -15.56339 -15.12497 -14.90251 -14.79187 -14.65562 -14.48031 -14.14129 -13.97511 -13.72237 -13.69348 -13.48563 -13.24565 -13.02503 -12.96254 -12.83136 -12.52174 -12.26511 -12.06735 -11.98899 -11.95407 -11.82805 -11.45327 -11.10267 -10.98886 -10.80785 -10.58476 -10.32986 -10.20759 -10.13641 -9.33901 -4.99826 0.09114 0.14781 0.69337 1.28148 1.41868 1.45575 1.58741 1.62038 1.94115 1.99842 2.41543 2.48512 3.28134 3.35288 3.41219 3.47625 3.52696 3.56715 3.60483 3.69483 3.70656 3.79466 3.87123 3.91276 3.92475 4.08246 4.10611 4.17212 4.20944 4.30051 4.33610 4.42208 4.54391 4.55289 4.59244 4.67097 4.68014 4.69726 4.77364 4.79005 4.94111 5.01042 5.03271 5.09489 5.14224 5.32600 5.33943 5.44272 5.49774 5.56395 5.94522 6.16348 6.41103 6.91596 7.10496 7.12485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.068 4.068 3 Si 0.769 3.231 4 C -0.129 4.129 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.123 3.877 8 O -0.315 6.315 9 C 0.071 3.929 10 C -0.130 4.130 11 C 0.518 3.482 12 O -0.590 6.590 13 N -0.701 5.701 14 C 0.112 3.888 15 H 0.087 0.913 16 C -0.111 4.111 17 C -0.113 4.113 18 H 0.082 0.918 19 C 0.135 3.865 20 N -0.379 5.379 21 C 0.256 3.744 22 N -0.586 5.586 23 C 0.183 3.817 24 N -0.345 5.345 25 C -0.136 4.136 26 C -0.212 4.212 27 C -0.104 4.104 28 H 0.404 0.596 29 H 0.099 0.901 30 H -0.292 1.292 31 H -0.304 1.304 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.422 0.578 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.260 0.740 44 H 0.228 0.772 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.133 0.867 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -8.044 2.536 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.179 4.179 3 Si 0.677 3.323 4 C -0.130 4.130 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.078 3.922 8 O -0.229 6.229 9 C -0.005 4.005 10 C -0.170 4.170 11 C 0.305 3.695 12 O -0.470 6.470 13 N -0.353 5.353 14 C 0.007 3.993 15 H 0.105 0.895 16 C -0.150 4.150 17 C -0.133 4.133 18 H 0.100 0.900 19 C 0.014 3.986 20 N -0.170 5.170 21 C -0.040 4.040 22 N -0.314 5.314 23 C -0.120 4.120 24 N -0.174 5.174 25 C -0.175 4.175 26 C -0.231 4.231 27 C -0.121 4.121 28 H 0.255 0.745 29 H 0.117 0.883 30 H -0.220 1.220 31 H -0.232 1.232 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.260 0.740 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.276 0.724 44 H 0.245 0.755 45 H 0.060 0.940 46 H 0.113 0.887 47 H 0.151 0.849 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.433 -6.949 1.956 7.618 hybrid contribution 0.218 0.021 -0.585 0.625 sum 2.651 -6.928 1.371 7.543 Atomic orbital electron populations 1.86438 1.17109 1.82329 1.51445 1.24651 0.85891 1.10168 0.97165 0.94615 0.77128 0.75966 0.84576 1.19657 1.00539 0.95515 0.97243 1.21086 0.96482 0.93185 0.96381 1.20800 1.00134 1.01943 0.94020 1.19142 0.94703 0.90939 0.87412 1.85959 1.65238 1.40341 1.31314 1.22462 0.93935 0.94273 0.89782 1.21442 1.02081 0.99472 0.93983 1.20727 0.79660 0.86899 0.82203 1.90744 1.60731 1.19578 1.75979 1.45790 1.51309 1.16431 1.21743 1.22537 0.92755 0.96003 0.88010 0.89455 1.23291 1.00443 0.99290 0.91958 1.22497 0.97948 0.99605 0.93209 0.89974 1.22229 1.05892 0.87738 0.82709 1.50783 1.23054 1.24973 1.18163 1.26930 0.97687 0.95785 0.83564 1.70545 1.14226 1.12632 1.34011 1.26425 0.95546 1.00671 0.89335 1.78007 1.13279 1.03686 1.22400 1.23483 0.97516 1.01358 0.95154 1.21310 1.06099 0.95106 1.00547 1.20798 0.98305 0.98669 0.94355 0.74499 0.88316 1.21950 1.23237 0.82793 0.82807 0.91858 0.92336 0.85357 0.84916 0.73988 0.85937 0.89187 0.83716 0.88086 0.72406 0.75545 0.94001 0.88737 0.84873 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.32 12.74 -148.98 -1.90 -2.22 16 2 C -0.07 -0.06 2.81 71.24 0.20 0.14 16 3 Si 0.77 0.36 29.78 68.60 2.04 2.40 16 4 C -0.13 -0.89 5.42 -19.85 -0.11 -1.00 16 5 C -0.05 -0.26 9.60 22.25 0.21 -0.05 16 6 C -0.15 -0.79 9.99 22.36 0.22 -0.56 16 7 C 0.12 0.96 6.69 22.50 0.15 1.11 16 8 O -0.31 -1.74 10.14 -92.43 -0.94 -2.68 16 9 C 0.07 0.24 4.03 71.98 0.29 0.53 16 10 C -0.13 0.45 6.07 29.85 0.18 0.64 16 11 C 0.52 0.81 7.83 87.66 0.69 1.49 16 12 O -0.59 -7.09 15.58 -3.03 -0.05 -7.14 16 13 N -0.70 3.48 5.36 -439.60 -2.36 1.12 16 14 C 0.11 -0.33 4.25 45.61 0.19 -0.14 16 15 H 0.09 0.31 7.47 -2.39 -0.02 0.29 16 16 C -0.11 1.18 7.39 31.12 0.23 1.41 16 17 C -0.11 0.73 3.85 -10.27 -0.04 0.69 16 18 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 19 C 0.13 -1.25 6.39 86.37 0.55 -0.70 16 20 N -0.38 0.34 3.69 -352.06 -1.30 -0.96 16 21 C 0.26 -0.38 12.63 180.36 2.28 1.90 16 22 N -0.59 -3.57 11.19 -204.01 -2.28 -5.86 16 23 C 0.18 1.08 13.03 180.77 2.36 3.44 16 24 N -0.35 -2.16 12.57 -61.25 -0.77 -2.93 16 25 C -0.14 0.23 7.44 31.21 0.23 0.47 16 26 C -0.21 -1.93 9.04 22.37 0.20 -1.73 16 27 C -0.10 -0.97 8.66 22.25 0.19 -0.78 16 28 H 0.40 -4.11 8.74 -74.05 -0.65 -4.75 16 29 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H -0.29 -1.81 7.11 99.48 0.71 -1.10 16 31 H -0.30 -2.75 7.11 99.48 0.71 -2.04 16 32 H 0.15 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.15 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.06 0.32 7.61 -2.39 -0.02 0.30 16 35 H 0.06 0.35 7.63 -2.39 -0.02 0.33 16 36 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.13 -1.09 8.14 -2.38 -0.02 -1.11 16 38 H 0.42 -5.25 8.73 -92.71 -0.81 -6.06 16 39 H 0.12 -1.97 8.08 -2.39 -0.02 -1.99 16 40 H 0.09 -0.99 8.14 -2.39 -0.02 -1.00 16 41 H 0.15 -2.46 8.09 -2.39 -0.02 -2.48 16 42 H 0.10 -1.08 7.84 -2.39 -0.02 -1.09 16 43 H 0.26 -3.14 8.06 -2.91 -0.02 -3.17 16 44 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 45 H 0.04 0.24 8.14 -2.38 -0.02 0.22 16 46 H 0.09 -0.31 7.89 -2.39 -0.02 -0.33 16 47 H 0.13 1.05 6.30 -2.91 -0.02 1.03 16 48 H 0.11 1.03 4.87 -2.91 -0.01 1.02 16 Total: 0.00 -34.67 404.54 0.07 -34.60 By element: Atomic # 1 Polarization: -22.79 SS G_CDS: -0.42 Total: -23.21 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 8.03 Total: 6.86 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -6.71 Total: -8.62 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -2.88 Total: -12.03 kcal Atomic # 14 Polarization: 0.36 SS G_CDS: 2.04 Total: 2.40 kcal Total: -34.67 0.07 -34.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.382 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds