Wall clock time and date at job start Sun Mar 7 2021 00:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47111 * 239.99927 * 2 1 3 5 5 C 1.38247 * 119.97247 * 120.02202 * 4 2 1 6 6 C 1.38289 * 120.11256 * 179.97438 * 5 4 2 7 7 C 1.38120 * 120.05462 * 359.77079 * 6 5 4 8 8 C 1.38757 * 119.94184 * 0.50289 * 7 6 5 9 9 O 1.35903 * 120.05071 * 179.74461 * 8 7 6 10 10 C 1.42901 * 117.00192 * 359.73164 * 9 8 7 11 11 C 1.53000 * 109.46998 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46943 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00044 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99611 * 180.02562 * 14 12 11 16 16 H 1.09006 * 112.91033 * 336.25051 * 15 14 12 17 17 C 1.53779 * 113.61483 * 107.50299 * 15 14 12 18 18 C 1.53784 * 87.08045 * 139.98067 * 17 15 14 19 19 H 1.08994 * 113.61477 * 89.11454 * 18 17 15 20 20 C 1.52997 * 113.61270 * 220.02125 * 18 17 15 21 21 N 1.46498 * 109.47070 * 272.49429 * 20 18 17 22 22 C 1.34434 * 126.82244 * 125.00319 * 21 20 18 23 23 N 1.30833 * 108.07492 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.83405 * 359.97438 * 23 22 21 25 25 N 1.30718 * 108.94230 * 359.75236 * 24 23 22 26 26 C 1.53779 * 113.61085 * 205.00218 * 15 14 12 27 27 C 1.38161 * 119.97407 * 299.99890 * 4 2 1 28 28 H 0.96701 * 114.00025 * 60.00452 * 1 2 3 29 29 H 1.09000 * 109.47040 * 119.99770 * 2 1 3 30 30 H 1.48502 * 109.99945 * 298.68216 * 3 2 1 31 31 H 1.48503 * 110.00200 * 59.99707 * 3 2 1 32 32 H 1.08003 * 119.94481 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.96516 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.02565 * 180.27453 * 7 6 5 35 35 H 1.08997 * 109.47151 * 59.99583 * 10 9 8 36 36 H 1.09003 * 109.46841 * 299.99542 * 10 9 8 37 37 H 1.08997 * 109.47583 * 59.99758 * 11 10 9 38 38 H 1.09003 * 109.46878 * 299.99430 * 11 10 9 39 39 H 0.96998 * 120.00342 * 0.02562 * 14 12 11 40 40 H 1.09002 * 113.61557 * 25.43179 * 17 15 14 41 41 H 1.09004 * 113.61501 * 254.52599 * 17 15 14 42 42 H 1.08998 * 109.47573 * 32.49481 * 20 18 17 43 43 H 1.09003 * 109.47157 * 152.50001 * 20 18 17 44 44 H 1.07999 * 125.96300 * 359.92200 * 22 21 20 45 45 H 1.07992 * 125.52818 * 180.02562 * 24 23 22 46 46 H 1.08997 * 113.61646 * 105.47219 * 26 15 14 47 47 H 1.08998 * 113.69354 * 334.57527 * 26 15 14 48 48 H 1.08001 * 120.02790 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0382 -2.1399 6 6 3.1895 -0.6874 -3.2697 7 6 2.8623 -2.0111 -3.4898 8 6 2.0597 -2.6864 -2.5814 9 8 1.7320 -3.9874 -2.7985 10 6 2.2440 -4.5960 -3.9857 11 6 1.7726 -6.0497 -4.0576 12 6 2.3120 -6.6914 -5.3099 13 8 3.0048 -6.0491 -6.0703 14 7 2.0244 -7.9791 -5.5849 15 6 2.5493 -8.6031 -6.8021 16 1 2.7878 -7.8790 -7.5812 17 6 3.6748 -9.6172 -6.5383 18 6 3.0317 -10.4948 -7.6252 19 1 3.4020 -10.2879 -8.6292 20 6 3.0302 -11.9869 -7.2866 21 7 4.2852 -12.5916 -7.7398 22 6 5.1553 -13.2957 -6.9951 23 7 6.1461 -13.6625 -7.7668 24 6 5.9447 -13.2138 -9.0051 25 7 4.8152 -12.5569 -9.0399 26 6 1.7051 -9.7881 -7.3000 27 6 1.5973 -2.0332 -1.4485 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4586 -1.2242 31 1 1.5615 2.4680 1.2085 32 1 2.9866 0.9959 -1.9677 33 1 3.8109 -0.1600 -3.9784 34 1 3.2278 -2.5190 -4.3701 35 1 3.3335 -4.5673 -3.9679 36 1 1.8805 -4.0530 -4.8581 37 1 0.6831 -6.0780 -4.0756 38 1 2.1358 -6.5930 -3.1852 39 1 1.4700 -8.4928 -4.9769 40 1 3.6396 -10.0594 -5.5426 41 1 4.6656 -9.2489 -6.8043 42 1 2.9337 -12.1148 -6.2085 43 1 2.1919 -12.4720 -7.7866 44 1 5.0544 -13.5189 -5.9432 45 1 6.6052 -13.3715 -9.8448 46 1 1.1059 -9.5577 -8.1808 47 1 1.1308 -10.2778 -6.5136 48 1 0.9767 -2.5582 -0.7374 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:46 Heat of formation + Delta-G solvation = 42.492304 kcal Electronic energy + Delta-G solvation = -29795.945314 eV Core-core repulsion = 25434.881903 eV Total energy + Delta-G solvation = -4361.063410 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.01534 -41.54457 -41.15652 -39.83842 -39.06236 -37.34335 -35.59256 -34.21915 -33.21412 -32.45185 -32.14786 -30.84648 -29.21617 -27.07393 -27.02159 -25.86987 -24.18185 -23.65010 -22.99156 -22.53519 -21.98106 -21.62661 -20.69066 -19.36044 -18.54302 -18.22327 -17.80792 -17.53493 -17.44483 -17.13441 -16.89277 -16.67804 -16.43597 -16.23207 -15.96120 -15.87283 -15.51220 -15.17005 -14.99120 -14.80768 -14.68614 -14.42495 -14.07720 -14.06342 -13.90258 -13.75828 -13.37152 -13.24162 -12.99699 -12.87081 -12.81375 -12.53103 -12.39197 -12.10796 -11.93555 -11.84728 -11.74970 -11.55551 -11.08020 -10.93645 -10.74715 -10.65211 -10.60995 -10.24519 -9.90264 -9.23170 -4.94485 0.23182 0.42864 0.65946 1.26788 1.27646 1.41512 1.61291 1.63192 1.96840 2.04246 2.39614 2.69237 3.10896 3.19123 3.25460 3.37214 3.38203 3.42384 3.50256 3.63146 3.69134 3.76419 3.78813 3.86946 3.90558 3.97470 4.06174 4.15404 4.21697 4.24907 4.28754 4.32817 4.34247 4.48774 4.52635 4.53514 4.57769 4.59700 4.69408 4.71284 4.76998 4.99344 5.00643 5.26518 5.28359 5.31328 5.39833 5.46160 5.47029 5.69824 5.79603 6.23496 6.37666 6.40076 6.99352 7.12738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.076 4.076 3 Si 0.688 3.312 4 C -0.081 4.081 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.202 4.202 8 C 0.132 3.868 9 O -0.316 6.316 10 C 0.074 3.926 11 C -0.142 4.142 12 C 0.522 3.478 13 O -0.536 6.536 14 N -0.719 5.719 15 C 0.125 3.875 16 H 0.119 0.881 17 C -0.148 4.148 18 C -0.121 4.121 19 H 0.110 0.890 20 C 0.141 3.859 21 N -0.378 5.378 22 C 0.253 3.747 23 N -0.547 5.547 24 C 0.199 3.801 25 N -0.318 5.318 26 C -0.136 4.136 27 C -0.126 4.126 28 H 0.376 0.624 29 H 0.120 0.880 30 H -0.260 1.260 31 H -0.257 1.257 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.404 0.596 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.217 0.783 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -1.981 1.882 3.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.185 4.185 3 Si 0.590 3.410 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.091 4.091 7 C -0.221 4.221 8 C 0.087 3.913 9 O -0.230 6.230 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.308 3.692 13 O -0.413 6.413 14 N -0.370 5.370 15 C 0.020 3.980 16 H 0.137 0.863 17 C -0.186 4.186 18 C -0.141 4.141 19 H 0.129 0.871 20 C 0.019 3.981 21 N -0.169 5.169 22 C -0.044 4.044 23 N -0.274 5.274 24 C -0.103 4.103 25 N -0.146 5.146 26 C -0.175 4.175 27 C -0.144 4.144 28 H 0.224 0.776 29 H 0.138 0.862 30 H -0.185 1.185 31 H -0.182 1.182 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.239 0.761 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.234 0.766 45 H 0.234 0.766 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.494 -0.937 1.482 2.304 hybrid contribution -1.288 -0.573 -0.274 1.436 sum -2.782 -1.510 1.209 3.388 Atomic orbital electron populations 1.86604 1.17572 1.80010 1.49312 1.25076 0.84066 1.11097 0.98304 0.94885 0.91757 0.74197 0.80211 1.20072 0.97660 0.93834 0.96557 1.20932 1.00783 1.00036 0.95450 1.20932 0.97843 0.93672 0.96669 1.21398 1.03008 0.96493 1.01167 1.18954 0.94675 0.83187 0.94513 1.85973 1.71164 1.22803 1.43089 1.22412 0.99364 0.92058 0.86299 1.21479 1.03923 0.95489 0.97302 1.20352 0.80020 0.81843 0.86983 1.90758 1.37849 1.62671 1.49985 1.45929 1.53814 1.12169 1.25119 1.22469 0.94394 0.93315 0.87817 0.86349 1.23588 0.99499 0.96712 0.98849 1.22708 0.97904 0.92119 1.01343 0.87146 1.21860 0.82708 0.93112 1.00407 1.50555 1.19136 1.40414 1.06793 1.26100 0.86276 0.92255 0.99754 1.70565 1.26372 1.27562 1.02866 1.26063 0.93899 0.94564 0.95819 1.78040 1.13258 1.25069 0.98191 1.23372 0.96243 0.95569 1.02330 1.20234 1.03183 0.93987 0.97018 0.77596 0.86197 1.18484 1.18207 0.85383 0.85141 0.84991 0.90880 0.90952 0.87410 0.87402 0.76131 0.89381 0.90707 0.87885 0.88879 0.76622 0.76642 0.89789 0.88940 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.81 12.77 -35.23 -0.45 -1.26 16 2 C -0.08 -0.01 2.82 36.01 0.10 0.09 16 3 Si 0.69 -0.54 29.79 -169.99 -5.06 -5.60 16 4 C -0.08 -0.07 5.39 -104.65 -0.56 -0.63 16 5 C -0.15 -0.02 8.67 -39.56 -0.34 -0.36 16 6 C -0.07 -0.02 10.04 -39.61 -0.40 -0.42 16 7 C -0.20 -0.23 9.04 -39.43 -0.36 -0.59 16 8 C 0.13 0.27 6.69 -39.22 -0.26 0.01 16 9 O -0.32 -0.51 10.14 -19.44 -0.20 -0.70 16 10 C 0.07 0.00 4.03 37.16 0.15 0.15 16 11 C -0.14 0.35 6.07 -27.88 -0.17 0.18 16 12 C 0.52 -0.28 7.83 -10.98 -0.09 -0.37 16 13 O -0.54 -2.00 15.58 5.56 0.09 -1.91 16 14 N -0.72 2.30 5.36 -53.02 -0.28 2.02 16 15 C 0.12 -0.31 4.24 -67.12 -0.28 -0.60 16 16 H 0.12 -0.02 7.47 -51.93 -0.39 -0.41 16 17 C -0.15 0.41 7.43 -25.92 -0.19 0.22 16 18 C -0.12 0.39 3.88 -89.80 -0.35 0.05 16 19 H 0.11 -0.10 8.01 -51.93 -0.42 -0.52 16 20 C 0.14 -0.54 6.39 -4.04 -0.03 -0.57 16 21 N -0.38 0.12 3.69 -62.63 -0.23 -0.11 16 22 C 0.25 -0.10 12.63 -90.65 -1.14 -1.24 16 23 N -0.55 -1.45 11.19 -15.83 -0.18 -1.63 16 24 C 0.20 0.41 13.03 -91.81 -1.20 -0.79 16 25 N -0.32 -0.77 12.46 29.29 0.37 -0.41 16 26 C -0.14 0.63 7.39 -25.92 -0.19 0.44 16 27 C -0.13 -0.23 9.55 -39.44 -0.38 -0.61 16 28 H 0.38 -0.47 8.70 45.56 0.40 -0.07 16 29 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H -0.26 -0.31 7.11 56.52 0.40 0.09 16 31 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 32 H 0.13 -0.22 4.87 -52.48 -0.26 -0.47 16 33 H 0.13 -0.23 8.06 -52.48 -0.42 -0.65 16 34 H 0.13 0.03 6.30 -52.49 -0.33 -0.30 16 35 H 0.07 0.02 7.61 -51.93 -0.40 -0.37 16 36 H 0.07 0.03 7.63 -51.93 -0.40 -0.37 16 37 H 0.11 -0.41 8.14 -51.93 -0.42 -0.84 16 38 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 39 H 0.40 -2.48 8.73 -40.82 -0.36 -2.83 16 40 H 0.09 -0.36 7.90 -51.93 -0.41 -0.77 16 41 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.10 -0.69 7.79 -51.93 -0.40 -1.10 16 43 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 44 H 0.22 -1.04 8.06 -52.49 -0.42 -1.47 16 45 H 0.22 -0.21 8.06 -52.49 -0.42 -0.63 16 46 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 47 H 0.09 -0.60 8.08 -51.93 -0.42 -1.02 16 48 H 0.13 0.23 8.06 -52.49 -0.42 -0.19 16 LS Contribution 404.27 15.07 6.09 6.09 Total: 0.00 -11.75 404.27 -12.34 -24.09 By element: Atomic # 1 Polarization: -8.73 SS G_CDS: -6.79 Total: -15.52 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -5.69 Total: -5.06 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -0.33 Total: -0.13 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.56 Total: -3.87 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -5.06 Total: -5.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -11.75 -12.34 -24.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.578 kcal (2) G-P(sol) polarization free energy of solvation -11.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds