Wall clock time and date at job start Sun Mar 7 2021 00:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47111 * 239.99927 * 2 1 3 5 5 C 1.38247 * 119.97247 * 120.02202 * 4 2 1 6 6 C 1.38289 * 120.11256 * 179.97438 * 5 4 2 7 7 C 1.38120 * 120.05462 * 359.77079 * 6 5 4 8 8 C 1.38757 * 119.94184 * 0.50289 * 7 6 5 9 9 O 1.35903 * 120.05071 * 179.74461 * 8 7 6 10 10 C 1.42901 * 117.00192 * 359.73164 * 9 8 7 11 11 C 1.53000 * 109.46998 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46943 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00044 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99611 * 180.02562 * 14 12 11 16 16 H 1.09006 * 112.91033 * 336.25051 * 15 14 12 17 17 C 1.53779 * 113.61483 * 107.50299 * 15 14 12 18 18 C 1.53784 * 87.08045 * 139.98067 * 17 15 14 19 19 H 1.08994 * 113.61477 * 89.11454 * 18 17 15 20 20 C 1.52997 * 113.61270 * 220.02125 * 18 17 15 21 21 N 1.46498 * 109.47070 * 272.49429 * 20 18 17 22 22 C 1.34434 * 126.82244 * 125.00319 * 21 20 18 23 23 N 1.30833 * 108.07492 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.83405 * 359.97438 * 23 22 21 25 25 N 1.30718 * 108.94230 * 359.75236 * 24 23 22 26 26 C 1.53779 * 113.61085 * 205.00218 * 15 14 12 27 27 C 1.38161 * 119.97407 * 299.99890 * 4 2 1 28 28 H 0.96701 * 114.00025 * 60.00452 * 1 2 3 29 29 H 1.09000 * 109.47040 * 119.99770 * 2 1 3 30 30 H 1.48502 * 109.99945 * 298.68216 * 3 2 1 31 31 H 1.48503 * 110.00200 * 59.99707 * 3 2 1 32 32 H 1.08003 * 119.94481 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.96516 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.02565 * 180.27453 * 7 6 5 35 35 H 1.08997 * 109.47151 * 59.99583 * 10 9 8 36 36 H 1.09003 * 109.46841 * 299.99542 * 10 9 8 37 37 H 1.08997 * 109.47583 * 59.99758 * 11 10 9 38 38 H 1.09003 * 109.46878 * 299.99430 * 11 10 9 39 39 H 0.96998 * 120.00342 * 0.02562 * 14 12 11 40 40 H 1.09002 * 113.61557 * 25.43179 * 17 15 14 41 41 H 1.09004 * 113.61501 * 254.52599 * 17 15 14 42 42 H 1.08998 * 109.47573 * 32.49481 * 20 18 17 43 43 H 1.09003 * 109.47157 * 152.50001 * 20 18 17 44 44 H 1.07999 * 125.96300 * 359.92200 * 22 21 20 45 45 H 1.07992 * 125.52818 * 180.02562 * 24 23 22 46 46 H 1.08997 * 113.61646 * 105.47219 * 26 15 14 47 47 H 1.08998 * 113.69354 * 334.57527 * 26 15 14 48 48 H 1.08001 * 120.02790 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0382 -2.1399 6 6 3.1895 -0.6874 -3.2697 7 6 2.8623 -2.0111 -3.4898 8 6 2.0597 -2.6864 -2.5814 9 8 1.7320 -3.9874 -2.7985 10 6 2.2440 -4.5960 -3.9857 11 6 1.7726 -6.0497 -4.0576 12 6 2.3120 -6.6914 -5.3099 13 8 3.0048 -6.0491 -6.0703 14 7 2.0244 -7.9791 -5.5849 15 6 2.5493 -8.6031 -6.8021 16 1 2.7878 -7.8790 -7.5812 17 6 3.6748 -9.6172 -6.5383 18 6 3.0317 -10.4948 -7.6252 19 1 3.4020 -10.2879 -8.6292 20 6 3.0302 -11.9869 -7.2866 21 7 4.2852 -12.5916 -7.7398 22 6 5.1553 -13.2957 -6.9951 23 7 6.1461 -13.6625 -7.7668 24 6 5.9447 -13.2138 -9.0051 25 7 4.8152 -12.5569 -9.0399 26 6 1.7051 -9.7881 -7.3000 27 6 1.5973 -2.0332 -1.4485 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5879 2.4586 -1.2242 31 1 1.5615 2.4680 1.2085 32 1 2.9866 0.9959 -1.9677 33 1 3.8109 -0.1600 -3.9784 34 1 3.2278 -2.5190 -4.3701 35 1 3.3335 -4.5673 -3.9679 36 1 1.8805 -4.0530 -4.8581 37 1 0.6831 -6.0780 -4.0756 38 1 2.1358 -6.5930 -3.1852 39 1 1.4700 -8.4928 -4.9769 40 1 3.6396 -10.0594 -5.5426 41 1 4.6656 -9.2489 -6.8043 42 1 2.9337 -12.1148 -6.2085 43 1 2.1919 -12.4720 -7.7866 44 1 5.0544 -13.5189 -5.9432 45 1 6.6052 -13.3715 -9.8448 46 1 1.1059 -9.5577 -8.1808 47 1 1.1308 -10.2778 -6.5136 48 1 0.9767 -2.5582 -0.7374 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:44 Heat of formation + Delta-G solvation = 42.022077 kcal Electronic energy + Delta-G solvation = -29795.965704 eV Core-core repulsion = 25434.881903 eV Total energy + Delta-G solvation = -4361.083801 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.98714 -41.50206 -41.12425 -39.74403 -39.09217 -37.39584 -35.48827 -34.15211 -33.13823 -32.49446 -32.16716 -30.86473 -29.05923 -27.08055 -26.76590 -25.81637 -24.09646 -23.68803 -22.94071 -22.48210 -21.95505 -21.54315 -20.48539 -19.38036 -18.42553 -18.19866 -17.80328 -17.51038 -17.30682 -17.14197 -16.90015 -16.60901 -16.32854 -16.22265 -15.95588 -15.80561 -15.53513 -15.08847 -14.96485 -14.77130 -14.55896 -14.44849 -14.13897 -14.01090 -13.69035 -13.47972 -13.24715 -13.23006 -12.95227 -12.88344 -12.70011 -12.44195 -12.35056 -12.00773 -11.89512 -11.83609 -11.59187 -11.54673 -11.08758 -10.96896 -10.79674 -10.68727 -10.52162 -10.10796 -9.95434 -9.29337 -4.90550 0.17827 0.37449 0.70081 1.29312 1.44221 1.48930 1.62039 1.70087 1.96448 2.00982 2.48529 2.64202 3.36314 3.39958 3.45726 3.47566 3.53781 3.53931 3.62902 3.73186 3.82822 3.87710 3.88873 3.95765 4.07534 4.14576 4.17199 4.22016 4.26433 4.36453 4.41939 4.50840 4.54686 4.61526 4.65979 4.67957 4.73865 4.75233 4.77464 4.92265 4.96563 5.01104 5.19539 5.24249 5.31028 5.36257 5.42105 5.45290 5.52527 5.68282 5.95683 6.30670 6.46017 6.46421 7.13137 7.15311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.086 4.086 3 Si 0.774 3.226 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.117 3.883 9 O -0.323 6.323 10 C 0.073 3.927 11 C -0.132 4.132 12 C 0.519 3.481 13 O -0.588 6.588 14 N -0.701 5.701 15 C 0.116 3.884 16 H 0.085 0.915 17 C -0.141 4.141 18 C -0.118 4.118 19 H 0.079 0.921 20 C 0.136 3.864 21 N -0.377 5.377 22 C 0.257 3.743 23 N -0.586 5.586 24 C 0.186 3.814 25 N -0.352 5.352 26 C -0.116 4.116 27 C -0.140 4.140 28 H 0.386 0.614 29 H 0.127 0.873 30 H -0.282 1.282 31 H -0.302 1.302 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.422 0.578 40 H 0.112 0.888 41 H 0.043 0.957 42 H 0.144 0.856 43 H 0.100 0.900 44 H 0.259 0.741 45 H 0.230 0.770 46 H 0.080 0.920 47 H 0.126 0.874 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -2.756 3.390 5.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.194 4.194 3 Si 0.679 3.321 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.094 4.094 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.237 6.237 10 C -0.002 4.002 11 C -0.172 4.172 12 C 0.306 3.694 13 O -0.468 6.468 14 N -0.353 5.353 15 C 0.011 3.989 16 H 0.104 0.896 17 C -0.180 4.180 18 C -0.137 4.137 19 H 0.097 0.903 20 C 0.015 3.985 21 N -0.168 5.168 22 C -0.039 4.039 23 N -0.314 5.314 24 C -0.117 4.117 25 N -0.180 5.180 26 C -0.154 4.154 27 C -0.159 4.159 28 H 0.235 0.765 29 H 0.144 0.856 30 H -0.209 1.209 31 H -0.230 1.230 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.062 0.938 42 H 0.162 0.838 43 H 0.119 0.881 44 H 0.275 0.725 45 H 0.247 0.753 46 H 0.098 0.902 47 H 0.144 0.856 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.490 -1.760 2.996 4.275 hybrid contribution -1.028 -0.303 -0.722 1.292 sum -3.518 -2.062 2.274 4.669 Atomic orbital electron populations 1.86571 1.18429 1.80458 1.50133 1.25331 0.83522 1.12161 0.98375 0.93913 0.90342 0.71453 0.76407 1.20173 0.97626 0.93519 0.96891 1.21173 1.00270 1.00875 0.95090 1.21240 0.97681 0.93388 0.97080 1.21546 1.03128 0.97105 1.01256 1.19141 0.95234 0.83549 0.94934 1.85951 1.71365 1.22773 1.43638 1.22442 0.98905 0.93413 0.85468 1.21445 1.04951 0.93805 0.96952 1.20704 0.79310 0.82359 0.86986 1.90743 1.40338 1.64013 1.51738 1.45790 1.53132 1.11425 1.24958 1.22390 0.95756 0.93289 0.87479 0.89649 1.23575 0.97636 0.96636 1.00154 1.22537 0.98673 0.92980 0.99551 0.90305 1.22227 0.81488 0.91918 1.02833 1.50748 1.19942 1.40240 1.05856 1.26890 0.85175 0.90854 1.00999 1.70538 1.28260 1.29169 1.03465 1.26431 0.94211 0.94560 0.96452 1.77955 1.13835 1.25895 1.00358 1.23312 0.95409 0.93734 1.02973 1.20317 1.03755 0.94625 0.97167 0.76455 0.85570 1.20872 1.22997 0.83482 0.83061 0.84732 0.91771 0.91964 0.85453 0.85297 0.73916 0.86931 0.93795 0.83832 0.88137 0.72499 0.75345 0.90176 0.85607 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.82 12.77 -148.98 -1.90 -3.73 16 2 C -0.09 -0.01 2.82 71.24 0.20 0.19 16 3 Si 0.77 -1.49 29.79 68.60 2.04 0.55 16 4 C -0.08 -0.14 5.39 -19.88 -0.11 -0.24 16 5 C -0.16 0.05 8.67 22.28 0.19 0.24 16 6 C -0.08 -0.02 10.04 22.25 0.22 0.20 16 7 C -0.21 -0.65 9.04 22.37 0.20 -0.45 16 8 C 0.12 0.58 6.69 22.51 0.15 0.73 16 9 O -0.32 -1.27 10.14 -92.46 -0.94 -2.21 16 10 C 0.07 0.06 4.03 71.98 0.29 0.35 16 11 C -0.13 0.71 6.07 29.85 0.18 0.89 16 12 C 0.52 -0.39 7.83 87.66 0.69 0.30 16 13 O -0.59 -5.59 15.58 -3.01 -0.05 -5.64 16 14 N -0.70 5.07 5.36 -440.03 -2.36 2.71 16 15 C 0.12 -0.55 4.24 45.52 0.19 -0.35 16 16 H 0.09 0.20 7.47 -2.38 -0.02 0.19 16 17 C -0.14 0.80 7.43 31.12 0.23 1.03 16 18 C -0.12 0.78 3.88 -10.27 -0.04 0.74 16 19 H 0.08 0.01 8.01 -2.39 -0.02 -0.01 16 20 C 0.14 -1.28 6.39 86.38 0.55 -0.73 16 21 N -0.38 0.41 3.69 -352.06 -1.30 -0.89 16 22 C 0.26 -0.45 12.63 180.36 2.28 1.83 16 23 N -0.59 -3.38 11.19 -204.00 -2.28 -5.66 16 24 C 0.19 1.01 13.03 180.76 2.36 3.37 16 25 N -0.35 -2.13 12.46 -61.25 -0.76 -2.90 16 26 C -0.12 1.21 7.39 31.12 0.23 1.45 16 27 C -0.14 -0.62 9.55 22.36 0.21 -0.41 16 28 H 0.39 -0.84 8.70 -74.06 -0.64 -1.49 16 29 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H -0.28 -0.50 7.11 99.48 0.71 0.20 16 31 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 32 H 0.15 -0.70 4.87 -2.91 -0.01 -0.71 16 33 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 34 H 0.13 0.25 6.30 -2.91 -0.02 0.23 16 35 H 0.06 0.15 7.61 -2.39 -0.02 0.13 16 36 H 0.06 0.16 7.63 -2.39 -0.02 0.14 16 37 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 39 H 0.42 -6.25 8.73 -92.71 -0.81 -7.06 16 40 H 0.11 -1.19 7.90 -2.39 -0.02 -1.21 16 41 H 0.04 0.04 8.14 -2.39 -0.02 0.03 16 42 H 0.14 -2.52 7.79 -2.39 -0.02 -2.53 16 43 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.26 -3.19 8.06 -2.91 -0.02 -3.22 16 45 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 46 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 47 H 0.13 -2.11 8.08 -2.39 -0.02 -2.13 16 48 H 0.13 0.60 8.06 -2.91 -0.02 0.57 16 Total: 0.00 -31.68 404.27 0.08 -31.60 By element: Atomic # 1 Polarization: -22.58 SS G_CDS: -0.41 Total: -22.99 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 8.03 Total: 9.13 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -6.70 Total: -6.73 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -2.89 Total: -11.57 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.04 Total: 0.55 kcal Total: -31.68 0.08 -31.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.622 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds