Wall clock time and date at job start Sun Mar 7 2021 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.47261 * 2 1 4 4 C 1.50702 * 109.47024 * 240.00048 * 2 1 3 5 5 C 1.38245 * 119.97085 * 120.02606 * 4 2 1 6 6 C 1.38289 * 120.11166 * 179.97438 * 5 4 2 7 7 C 1.38126 * 120.05427 * 359.67971 * 6 5 4 8 8 C 1.38754 * 119.94325 * 0.59121 * 7 6 5 9 9 O 1.35899 * 120.05857 * 179.70228 * 8 7 6 10 10 C 1.42908 * 116.99727 * 359.72972 * 9 8 7 11 11 C 1.52998 * 109.47186 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47303 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47004 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00472 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72653 * 15 13 12 17 17 H 1.08998 * 112.85361 * 336.47110 * 16 15 13 18 18 C 1.53778 * 113.61557 * 107.77998 * 16 15 13 19 19 C 1.53785 * 87.08457 * 139.98112 * 18 16 15 20 20 H 1.08997 * 113.61414 * 89.11579 * 19 18 16 21 21 C 1.52995 * 113.69293 * 220.01437 * 19 18 16 22 22 N 1.46504 * 109.46802 * 272.52972 * 21 19 18 23 23 C 1.34428 * 126.82137 * 124.70869 * 22 21 19 24 24 N 1.30836 * 108.07995 * 179.89713 * 23 22 21 25 25 C 1.33242 * 109.82252 * 0.37957 * 24 23 22 26 26 N 1.30711 * 108.95239 * 359.76506 * 25 24 23 27 27 C 1.53786 * 113.61394 * 205.27970 * 16 15 13 28 28 C 1.38168 * 119.97157 * 300.00001 * 4 2 1 29 29 H 0.96701 * 113.99635 * 59.99677 * 1 2 3 30 30 H 1.09003 * 109.47208 * 120.00092 * 2 1 3 31 31 H 1.48499 * 109.99530 * 59.99802 * 3 2 1 32 32 H 1.48503 * 110.00031 * 181.31807 * 3 2 1 33 33 H 1.08000 * 119.94381 * 359.97012 * 5 4 2 34 34 H 1.07998 * 119.97432 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.03018 * 180.32101 * 7 6 5 36 36 H 1.08995 * 109.46963 * 59.99819 * 10 9 8 37 37 H 1.09001 * 109.47047 * 299.99772 * 10 9 8 38 38 H 1.09000 * 109.47250 * 59.99235 * 11 10 9 39 39 H 1.09007 * 109.46897 * 300.00114 * 11 10 9 40 40 H 1.09003 * 109.46690 * 59.99829 * 12 11 10 41 41 H 1.08993 * 109.46773 * 300.00165 * 12 11 10 42 42 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 43 43 H 1.08997 * 113.61721 * 254.52733 * 18 16 15 44 44 H 1.09004 * 113.61436 * 25.43627 * 18 16 15 45 45 H 1.08997 * 109.47576 * 32.52960 * 21 19 18 46 46 H 1.09000 * 109.47801 * 152.53522 * 21 19 18 47 47 H 1.08006 * 125.96063 * 0.04405 * 23 22 21 48 48 H 1.08002 * 125.52149 * 179.79776 * 25 24 23 49 49 H 1.08999 * 113.61272 * 334.56869 * 27 16 15 50 50 H 1.09001 * 113.61514 * 105.47520 * 27 16 15 51 51 H 1.07992 * 120.02949 * 0.04835 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7265 -0.0381 -2.1398 6 6 3.1895 -0.6874 -3.2697 7 6 2.8637 -2.0116 -3.4889 8 6 2.0611 -2.6869 -2.5806 9 8 1.7341 -3.9881 -2.7971 10 6 2.2469 -4.5970 -3.9840 11 6 1.7762 -6.0511 -4.0554 12 6 2.3246 -6.7028 -5.3264 13 6 1.8615 -8.1352 -5.3964 14 8 1.1613 -8.5899 -4.5166 15 7 2.2246 -8.9106 -6.4372 16 6 1.7793 -10.3048 -6.5023 17 1 1.5311 -10.7160 -5.5238 18 6 0.7024 -10.5583 -7.5704 19 6 1.4318 -11.8763 -7.8802 20 1 1.0873 -12.7177 -7.2790 21 6 1.5038 -12.2028 -9.3731 22 7 0.3010 -12.9388 -9.7706 23 6 -0.5576 -12.6097 -10.7512 24 7 -1.4966 -13.5199 -10.7911 25 6 -1.2769 -14.4373 -9.8501 26 7 -0.1875 -14.1249 -9.1988 27 6 2.7049 -11.2089 -7.3335 28 6 1.5971 -2.0332 -1.4486 29 1 -0.3933 0.4418 -0.7651 30 1 1.7924 -0.5139 0.8900 31 1 1.5614 2.4678 1.2085 32 1 3.5347 1.7703 -0.0321 33 1 2.9865 0.9958 -1.9676 34 1 3.8102 -0.1599 -3.9788 35 1 3.2298 -2.5198 -4.3688 36 1 3.3363 -4.5679 -3.9657 37 1 1.8835 -4.0546 -4.8568 38 1 0.6867 -6.0798 -4.0737 39 1 2.1393 -6.5938 -3.1826 40 1 3.4141 -6.6740 -5.3083 41 1 1.9612 -6.1600 -6.1988 42 1 2.7843 -8.5469 -7.1410 43 1 -0.2968 -10.6988 -7.1582 44 1 0.7257 -9.8428 -8.3924 45 1 1.5689 -11.2771 -9.9449 46 1 2.3849 -12.8138 -9.5695 47 1 -0.4838 -11.7460 -11.3954 48 1 -1.8980 -15.2996 -9.6572 49 1 3.2756 -10.6712 -8.0906 50 1 3.3221 -11.8745 -6.7301 51 1 0.9756 -2.5578 -0.7381 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:08:48 Heat of formation + Delta-G solvation = 34.369621 kcal Electronic energy + Delta-G solvation = -31329.316075 eV Core-core repulsion = 26812.362819 eV Total energy + Delta-G solvation = -4516.953255 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.99061 -41.36216 -41.16708 -39.69575 -39.14602 -37.30201 -35.46878 -34.91217 -33.93890 -32.44438 -32.17335 -31.24892 -29.34815 -28.13100 -26.83273 -26.75742 -24.71499 -23.69364 -23.35041 -22.94131 -22.26719 -21.82455 -21.50616 -20.46779 -19.18687 -18.41177 -18.13009 -17.82382 -17.47138 -17.35091 -17.12644 -16.83135 -16.62540 -16.40194 -16.25674 -16.09740 -15.80309 -15.40326 -15.14264 -15.04647 -14.82089 -14.74048 -14.35276 -14.24773 -14.18358 -13.73048 -13.48958 -13.35993 -13.29351 -13.16239 -13.04604 -12.75844 -12.68954 -12.36865 -12.30930 -12.24843 -11.97468 -11.88985 -11.62242 -11.59419 -11.54232 -11.01659 -10.93928 -10.79876 -10.52065 -10.50813 -10.06340 -9.91033 -9.24265 -4.99206 0.21921 0.41057 0.69852 1.29570 1.45158 1.58882 1.64696 1.91299 1.99803 2.00836 2.39900 2.68982 3.36623 3.45669 3.47068 3.50196 3.53485 3.63371 3.67486 3.75536 3.85186 3.87973 3.88656 3.97711 4.10458 4.13036 4.16097 4.22427 4.25388 4.33733 4.38924 4.41902 4.43404 4.51003 4.53119 4.63295 4.67137 4.68115 4.76443 4.77763 4.92481 4.99000 4.99719 5.01560 5.14963 5.23279 5.29303 5.30690 5.39030 5.44729 5.45741 5.56110 5.75308 5.95768 6.43388 6.55123 6.73930 7.12706 7.26580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.794 3.206 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.341 6.341 10 C 0.058 3.942 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.506 3.494 14 O -0.596 6.596 15 N -0.704 5.704 16 C 0.114 3.886 17 H 0.079 0.921 18 C -0.141 4.141 19 C -0.118 4.118 20 H 0.076 0.924 21 C 0.136 3.864 22 N -0.378 5.378 23 C 0.257 3.743 24 N -0.587 5.587 25 C 0.186 3.814 26 N -0.353 5.353 27 C -0.114 4.114 28 C -0.154 4.154 29 H 0.395 0.605 30 H 0.101 0.899 31 H -0.301 1.301 32 H -0.280 1.280 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.422 0.578 43 H 0.040 0.960 44 H 0.114 0.886 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.261 0.739 48 H 0.230 0.770 49 H 0.128 0.872 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 6.630 -10.727 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.194 4.194 3 Si 0.699 3.301 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.089 4.089 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.255 6.255 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.165 4.165 13 C 0.295 3.705 14 O -0.476 6.476 15 N -0.356 5.356 16 C 0.009 3.991 17 H 0.097 0.903 18 C -0.179 4.179 19 C -0.138 4.138 20 H 0.095 0.905 21 C 0.016 3.984 22 N -0.168 5.168 23 C -0.039 4.039 24 N -0.315 5.315 25 C -0.117 4.117 26 N -0.181 5.181 27 C -0.153 4.153 28 C -0.173 4.173 29 H 0.245 0.755 30 H 0.118 0.882 31 H -0.229 1.229 32 H -0.207 1.207 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.261 0.739 43 H 0.058 0.942 44 H 0.132 0.868 45 H 0.163 0.837 46 H 0.119 0.881 47 H 0.276 0.724 48 H 0.246 0.754 49 H 0.146 0.854 50 H 0.097 0.903 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.139 6.053 -8.654 13.333 hybrid contribution -0.148 -1.045 0.484 1.161 sum 7.991 5.007 -8.170 12.477 Atomic orbital electron populations 1.86472 1.17385 1.82296 1.50450 1.25408 0.85295 1.11806 0.96876 0.93509 0.77750 0.74291 0.84555 1.20211 0.97852 0.93446 0.97016 1.21195 1.00418 1.00765 0.95438 1.21323 0.97314 0.93529 0.96764 1.21611 1.02569 0.96855 1.01316 1.19205 0.95227 0.83549 0.94946 1.86059 1.71705 1.22910 1.44872 1.23002 0.99652 0.93051 0.85902 1.21168 1.01488 0.93110 0.98419 1.21539 1.04701 0.90443 0.99835 1.21298 0.78945 0.89455 0.80846 1.90747 1.39949 1.76198 1.40706 1.45833 1.53421 1.11291 1.25046 1.22338 0.96566 0.81825 0.98419 0.90274 1.23566 0.97509 0.97189 0.99678 1.22541 0.98733 0.97132 0.95422 0.90549 1.22230 0.83398 0.97260 0.95505 1.50755 1.22258 1.18123 1.25688 1.26906 0.85540 0.99686 0.91737 1.70543 1.28683 1.06359 1.25892 1.26427 0.94285 0.99996 0.90955 1.77956 1.15413 1.01214 1.23548 1.23309 0.95407 0.97245 0.99309 1.20315 1.04263 0.94971 0.97721 0.75466 0.88153 1.22917 1.20709 0.83451 0.82178 0.82731 0.89800 0.89558 0.92414 0.92530 0.85206 0.85071 0.73900 0.94150 0.86751 0.83691 0.88078 0.72388 0.75377 0.85384 0.90332 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.74 12.77 -148.98 -1.90 -3.64 16 2 C -0.09 -0.16 2.82 71.24 0.20 0.04 16 3 Si 0.79 -1.56 29.79 68.60 2.04 0.49 16 4 C -0.08 -0.21 5.39 -19.88 -0.11 -0.32 16 5 C -0.16 0.27 8.67 22.28 0.19 0.46 16 6 C -0.07 0.25 10.04 22.26 0.22 0.47 16 7 C -0.21 0.30 9.04 22.37 0.20 0.50 16 8 C 0.12 0.53 6.69 22.51 0.15 0.68 16 9 O -0.34 -2.01 10.14 -92.41 -0.94 -2.95 16 10 C 0.06 -0.18 4.74 71.98 0.34 0.16 16 11 C -0.10 0.05 4.87 30.59 0.15 0.20 16 12 C -0.13 1.04 5.70 29.85 0.17 1.21 16 13 C 0.51 -0.07 7.83 87.66 0.69 0.61 16 14 O -0.60 -7.37 15.58 -3.04 -0.05 -7.41 16 15 N -0.70 4.97 5.35 -440.04 -2.36 2.61 16 16 C 0.11 -0.42 4.24 45.52 0.19 -0.23 16 17 H 0.08 0.35 7.46 -2.39 -0.02 0.33 16 18 C -0.14 0.68 7.43 31.12 0.23 0.91 16 19 C -0.12 0.71 3.87 -10.26 -0.04 0.67 16 20 H 0.08 0.09 8.00 -2.39 -0.02 0.07 16 21 C 0.14 -1.27 6.39 86.38 0.55 -0.72 16 22 N -0.38 0.30 3.69 -352.05 -1.30 -1.00 16 23 C 0.26 -0.41 12.63 180.36 2.28 1.86 16 24 N -0.59 -3.55 11.19 -203.99 -2.28 -5.83 16 25 C 0.19 1.09 13.03 180.77 2.36 3.45 16 26 N -0.35 -2.32 12.45 -61.24 -0.76 -3.08 16 27 C -0.11 1.15 7.39 31.13 0.23 1.38 16 28 C -0.15 -1.00 9.55 22.37 0.21 -0.79 16 29 H 0.40 -2.15 8.70 -74.06 -0.64 -2.80 16 30 H 0.10 0.39 7.96 -2.39 -0.02 0.37 16 31 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 32 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 33 H 0.15 -0.93 4.87 -2.91 -0.01 -0.94 16 34 H 0.16 -1.54 8.06 -2.91 -0.02 -1.57 16 35 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 36 H 0.08 -0.61 7.65 -2.39 -0.02 -0.62 16 37 H 0.09 -0.65 7.67 -2.39 -0.02 -0.67 16 38 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 39 H 0.06 0.27 8.10 -2.38 -0.02 0.25 16 40 H 0.13 -1.83 8.14 -2.39 -0.02 -1.84 16 41 H 0.13 -1.88 8.14 -2.39 -0.02 -1.90 16 42 H 0.42 -6.58 8.73 -92.71 -0.81 -7.39 16 43 H 0.04 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.11 -1.18 7.90 -2.39 -0.02 -1.20 16 45 H 0.15 -2.57 7.79 -2.39 -0.02 -2.59 16 46 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H 0.26 -3.23 8.06 -2.91 -0.02 -3.26 16 48 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 49 H 0.13 -2.17 8.08 -2.39 -0.02 -2.19 16 50 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 51 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 Total: 0.00 -38.66 425.75 0.23 -38.43 By element: Atomic # 1 Polarization: -27.74 SS G_CDS: -0.45 Total: -28.19 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 8.22 Total: 10.57 kcal Atomic # 7 Polarization: -0.60 SS G_CDS: -6.70 Total: -7.30 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -2.89 Total: -14.00 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.04 Total: 0.49 kcal Total: -38.66 0.23 -38.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.802 kcal (2) G-P(sol) polarization free energy of solvation -38.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds