Wall clock time and date at job start Sun Mar 7 2021 00:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38271 * 119.94563 * 119.72381 * 4 2 1 6 6 C 1.38146 * 120.05540 * 179.72476 * 5 4 2 7 7 C 1.38728 * 119.94387 * 0.57065 * 6 5 4 8 8 O 1.35895 * 120.05690 * 179.67938 * 7 6 5 9 9 C 1.42897 * 117.00208 * 0.02633 * 8 7 6 10 10 C 1.50699 * 109.47708 * 180.02562 * 9 8 7 11 11 C 1.36408 * 125.80512 * 89.70726 * 10 9 8 12 12 C 1.47377 * 127.19292 * 0.02562 * 11 10 9 13 13 O 1.21619 * 120.00156 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00426 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00410 * 179.97438 * 14 12 11 16 16 H 1.08996 * 112.84249 * 23.80830 * 15 14 12 17 17 C 1.53779 * 113.61350 * 154.99929 * 15 14 12 18 18 C 1.53776 * 87.07970 * 139.98495 * 17 15 14 19 19 H 1.09001 * 113.61626 * 89.11324 * 18 17 15 20 20 C 1.53001 * 113.61586 * 219.93508 * 18 17 15 21 21 N 1.46506 * 109.47115 * 184.99781 * 20 18 17 22 22 C 1.34433 * 126.81799 * 124.71198 * 21 20 18 23 23 N 1.30833 * 108.07384 * 179.89457 * 22 21 20 24 24 C 1.33239 * 109.82921 * 0.38032 * 23 22 21 25 25 N 1.30710 * 108.94873 * 359.76236 * 24 23 22 26 26 C 1.53780 * 113.61668 * 252.50038 * 15 14 12 27 27 C 1.47019 * 105.61750 * 179.87279 * 11 10 9 28 28 C 1.34177 * 105.95393 * 0.39477 * 27 11 10 29 29 O 1.33657 * 125.79574 * 270.02812 * 10 9 8 30 30 C 1.38735 * 119.89072 * 359.70511 * 7 6 5 31 31 C 1.38147 * 119.94145 * 359.97438 * 30 7 6 32 32 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 33 33 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 34 34 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 35 35 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 36 36 H 1.08003 * 119.96765 * 359.97438 * 5 4 2 37 37 H 1.08003 * 120.02761 * 180.25084 * 6 5 4 38 38 H 1.09001 * 109.46870 * 299.99559 * 9 8 7 39 39 H 1.08995 * 109.47175 * 59.99163 * 9 8 7 40 40 H 0.96998 * 120.00208 * 359.97438 * 14 12 11 41 41 H 1.09001 * 113.61764 * 254.53537 * 17 15 14 42 42 H 1.09005 * 113.61397 * 25.35536 * 17 15 14 43 43 H 1.08997 * 109.47237 * 304.99721 * 20 18 17 44 44 H 1.09003 * 109.47125 * 65.00296 * 20 18 17 45 45 H 1.08000 * 125.96487 * 0.03525 * 22 21 20 46 46 H 1.07998 * 125.52724 * 179.79968 * 24 23 22 47 47 H 1.08998 * 113.61246 * 334.56398 * 26 15 14 48 48 H 1.08998 * 113.61162 * 105.47201 * 26 15 14 49 49 H 1.08006 * 127.02776 * 180.18589 * 27 11 10 50 50 H 1.08001 * 125.44176 * 179.72184 * 28 27 11 51 51 H 1.07994 * 120.03351 * 180.02562 * 30 7 6 52 52 H 1.07997 * 119.97419 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7214 -0.0355 -2.1428 6 6 3.1879 -0.6861 -3.2687 7 6 2.8531 -2.0141 -3.4896 8 8 3.3053 -2.6544 -4.5997 9 6 4.1218 -1.8992 -5.4969 10 6 4.5253 -2.7674 -6.6607 11 6 3.8328 -2.9109 -7.8271 12 6 2.5631 -2.2595 -8.1953 13 8 2.0217 -1.4986 -7.4162 14 7 2.0019 -2.5068 -9.3954 15 6 0.7395 -1.8596 -9.7612 16 1 0.5652 -0.9329 -9.2146 17 6 0.5321 -1.7278 -11.2793 18 6 -0.9410 -2.0919 -11.0302 19 1 -1.5764 -1.2291 -10.8303 20 6 -1.5278 -3.0295 -12.0874 21 7 -2.9575 -3.2207 -11.8311 22 6 -3.9667 -3.0002 -12.6914 23 7 -5.0885 -3.2912 -12.0843 24 6 -4.8376 -3.6910 -10.8383 25 7 -3.5465 -3.6648 -10.6360 26 6 -0.4658 -2.8147 -9.7587 27 6 4.6195 -3.8485 -8.6417 28 6 5.6854 -4.1795 -7.8970 29 8 5.6196 -3.5323 -6.7230 30 6 2.0554 -2.6873 -2.5757 31 6 1.5970 -2.0342 -1.4480 32 1 -0.3934 0.4417 -0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5614 2.4679 1.2086 35 1 3.5344 1.7704 -0.0321 36 1 2.9775 0.9999 -1.9728 37 1 3.8084 -0.1597 -3.9789 38 1 3.5603 -1.0396 -5.8630 39 1 5.0137 -1.5545 -4.9738 40 1 2.4338 -3.1134 -10.0170 41 1 0.6741 -0.7137 -11.6530 42 1 1.0752 -2.4730 -11.8605 43 1 -1.3912 -2.5926 -13.0766 44 1 -1.0187 -3.9923 -12.0419 45 1 -3.8685 -2.6470 -13.7073 46 1 -5.5805 -3.9892 -10.1133 47 1 -0.1966 -3.8578 -9.9243 48 1 -1.1294 -2.6780 -8.9049 49 1 4.3854 -4.2016 -9.6352 50 1 6.4706 -4.8588 -8.1944 51 1 1.7938 -3.7213 -2.7452 52 1 0.9757 -2.5576 -0.7365 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:03 Heat of formation + Delta-G solvation = 70.844043 kcal Electronic energy + Delta-G solvation = -37617.815518 eV Core-core repulsion = 32554.620918 eV Total energy + Delta-G solvation = -5063.194600 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.73159 -42.95864 -41.33715 -41.11909 -39.51198 -39.21293 -37.20666 -35.50179 -34.43501 -33.61892 -32.83777 -32.13977 -32.01219 -31.41185 -29.17490 -27.90428 -26.72673 -26.23540 -25.39625 -23.95532 -23.73691 -22.84109 -22.60786 -22.37627 -21.73384 -21.40480 -20.44960 -19.54240 -19.12543 -18.31856 -18.28067 -17.50669 -17.30281 -17.23713 -16.98468 -16.83067 -16.68159 -16.36306 -16.14622 -15.99197 -15.89744 -15.77080 -15.61889 -15.45120 -15.00787 -14.77748 -14.66080 -14.48088 -14.37255 -14.23294 -13.94248 -13.67077 -13.60041 -13.55732 -13.45516 -13.17417 -13.14321 -12.84445 -12.26969 -12.24400 -12.11370 -12.08930 -11.91556 -11.77356 -11.41153 -11.13016 -10.97774 -10.95799 -10.77426 -10.55252 -10.43893 -10.12734 -10.09840 -9.83305 -9.27273 -5.00888 -0.05760 0.22935 0.25443 0.72861 1.02465 1.31291 1.47972 1.50860 1.61296 1.93931 2.03018 2.05271 2.13392 2.44906 2.60968 3.31708 3.32674 3.44294 3.52238 3.55596 3.57142 3.64302 3.65976 3.72747 3.76408 3.78158 3.87950 3.91810 3.95234 4.08842 4.13917 4.20242 4.25445 4.33877 4.38334 4.44306 4.47824 4.57322 4.59876 4.62349 4.71165 4.75677 4.79160 4.81027 4.91364 4.97949 5.05135 5.10278 5.16797 5.21127 5.26472 5.35983 5.43559 5.47561 5.53076 5.64979 5.87631 5.98066 6.22234 6.45335 6.75368 7.11294 7.15897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.070 4.070 3 Si 0.773 3.227 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.124 3.876 8 O -0.324 6.324 9 C 0.135 3.865 10 C 0.038 3.962 11 C -0.223 4.223 12 C 0.582 3.418 13 O -0.574 6.574 14 N -0.695 5.695 15 C 0.115 3.885 16 H 0.092 0.908 17 C -0.111 4.111 18 C -0.110 4.110 19 H 0.085 0.915 20 C 0.135 3.865 21 N -0.379 5.379 22 C 0.256 3.744 23 N -0.586 5.586 24 C 0.183 3.817 25 N -0.345 5.345 26 C -0.137 4.137 27 C -0.195 4.195 28 C -0.013 4.013 29 O -0.179 6.179 30 C -0.164 4.164 31 C -0.058 4.058 32 H 0.394 0.606 33 H 0.107 0.893 34 H -0.298 1.298 35 H -0.282 1.282 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.417 0.583 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.099 0.901 45 H 0.260 0.740 46 H 0.228 0.772 47 H 0.090 0.910 48 H 0.042 0.958 49 H 0.195 0.805 50 H 0.252 0.748 51 H 0.131 0.869 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 0.587 -11.020 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.180 4.180 3 Si 0.679 3.321 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.223 4.223 7 C 0.079 3.921 8 O -0.238 6.238 9 C 0.060 3.940 10 C -0.015 4.015 11 C -0.228 4.228 12 C 0.371 3.629 13 O -0.455 6.455 14 N -0.345 5.345 15 C 0.010 3.990 16 H 0.111 0.889 17 C -0.149 4.149 18 C -0.130 4.130 19 H 0.103 0.897 20 C 0.014 3.986 21 N -0.170 5.170 22 C -0.040 4.040 23 N -0.314 5.314 24 C -0.120 4.120 25 N -0.173 5.173 26 C -0.176 4.176 27 C -0.213 4.213 28 C -0.079 4.079 29 O -0.075 6.075 30 C -0.182 4.182 31 C -0.076 4.076 32 H 0.244 0.756 33 H 0.125 0.875 34 H -0.226 1.226 35 H -0.209 1.209 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.255 0.745 41 H 0.111 0.889 42 H 0.139 0.861 43 H 0.164 0.836 44 H 0.118 0.882 45 H 0.276 0.724 46 H 0.244 0.756 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.212 0.788 50 H 0.268 0.732 51 H 0.149 0.851 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.353 0.996 -8.864 10.951 hybrid contribution 0.103 -0.936 0.071 0.944 sum 6.456 0.061 -8.793 10.909 Atomic orbital electron populations 1.86451 1.17414 1.82198 1.50433 1.25138 0.85148 1.10831 0.96851 0.93704 0.77937 0.75547 0.84865 1.20366 1.01923 0.95416 0.98403 1.21029 0.95665 0.99930 0.92708 1.21421 1.06000 0.93716 1.01180 1.19179 0.94650 0.91960 0.86331 1.86048 1.65318 1.40727 1.31706 1.21150 0.95338 0.91346 0.86134 1.22059 0.87166 0.96080 0.96222 1.21412 0.98381 1.05771 0.97190 1.17501 0.83188 0.80170 0.82078 1.90777 1.64594 1.38579 1.51514 1.45617 1.24300 1.47854 1.16773 1.22551 0.82274 0.96556 0.97601 0.88942 1.23297 0.93404 1.04744 0.93499 1.22490 0.96824 0.98429 0.95270 0.89691 1.22229 0.73653 1.01408 1.01289 1.50784 1.09375 1.48195 1.08612 1.26926 0.82021 0.95552 0.99454 1.70539 1.29454 1.23489 1.07898 1.26418 0.92923 0.98298 0.94373 1.78021 1.10080 1.23327 1.05892 1.23435 0.96606 0.99585 0.97949 1.23266 0.95116 1.00141 1.02807 1.24930 1.02215 0.98553 0.82206 1.83795 1.38970 1.46832 1.37864 1.20623 1.01262 1.01388 0.94960 1.20932 0.97014 0.93953 0.95742 0.75592 0.87545 1.22575 1.20921 0.83194 0.83347 0.87351 0.88278 0.74528 0.88862 0.86115 0.83620 0.88248 0.72403 0.75595 0.89125 0.93919 0.78792 0.73229 0.85069 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.63 12.77 -148.98 -1.90 -3.53 16 2 C -0.07 -0.14 2.82 71.24 0.20 0.06 16 3 Si 0.77 -0.28 29.78 68.60 2.04 1.76 16 4 C -0.16 -0.59 5.39 -19.85 -0.11 -0.70 16 5 C -0.08 -0.17 8.66 22.26 0.19 0.02 16 6 C -0.20 -0.89 9.04 22.37 0.20 -0.69 16 7 C 0.12 1.05 6.69 22.51 0.15 1.20 16 8 O -0.32 -3.31 10.12 -92.37 -0.93 -4.24 16 9 C 0.13 0.72 4.73 71.24 0.34 1.06 16 10 C 0.04 0.20 7.00 25.26 0.18 0.37 16 11 C -0.22 -0.72 6.31 -19.00 -0.12 -0.84 16 12 C 0.58 3.26 7.81 86.65 0.68 3.93 16 13 O -0.57 -7.60 14.45 -4.09 -0.06 -7.66 16 14 N -0.69 1.59 5.35 -443.34 -2.37 -0.79 16 15 C 0.12 -0.26 4.24 45.52 0.19 -0.07 16 16 H 0.09 0.31 7.46 -2.39 -0.02 0.29 16 17 C -0.11 1.18 7.39 31.12 0.23 1.41 16 18 C -0.11 0.72 3.85 -10.27 -0.04 0.69 16 19 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 20 C 0.13 -1.26 6.39 86.38 0.55 -0.71 16 21 N -0.38 0.38 3.69 -352.04 -1.30 -0.92 16 22 C 0.26 -0.44 12.63 180.36 2.28 1.84 16 23 N -0.59 -3.46 11.19 -204.00 -2.28 -5.74 16 24 C 0.18 1.07 13.03 180.77 2.36 3.43 16 25 N -0.34 -2.16 12.57 -61.25 -0.77 -2.93 16 26 C -0.14 0.14 7.43 31.12 0.23 0.37 16 27 C -0.19 0.90 10.60 23.65 0.25 1.16 16 28 C -0.01 0.06 12.03 66.89 0.80 0.87 16 29 O -0.18 -0.47 10.52 4.39 0.05 -0.42 16 30 C -0.16 -1.29 9.99 22.37 0.22 -1.07 16 31 C -0.06 -0.33 9.60 22.25 0.21 -0.12 16 32 H 0.39 -1.82 8.70 -74.06 -0.64 -2.46 16 33 H 0.11 0.31 7.96 -2.39 -0.02 0.29 16 34 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 35 H -0.28 -1.04 7.11 99.48 0.71 -0.33 16 36 H 0.15 -0.42 4.87 -2.91 -0.01 -0.43 16 37 H 0.15 0.01 6.30 -2.91 -0.02 -0.01 16 38 H 0.11 0.67 6.02 -2.39 -0.01 0.65 16 39 H 0.10 0.07 7.66 -2.39 -0.02 0.05 16 40 H 0.42 -3.82 7.90 -92.71 -0.73 -4.55 16 41 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.12 -1.91 8.08 -2.38 -0.02 -1.93 16 43 H 0.15 -2.52 8.09 -2.39 -0.02 -2.54 16 44 H 0.10 -1.04 7.85 -2.39 -0.02 -1.06 16 45 H 0.26 -3.22 8.06 -2.91 -0.02 -3.24 16 46 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 47 H 0.09 -0.18 7.90 -2.39 -0.02 -0.20 16 48 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.19 -2.44 7.74 -2.91 -0.02 -2.46 16 50 H 0.25 -3.49 8.06 -2.91 -0.02 -3.51 16 51 H 0.13 0.91 8.06 -2.91 -0.02 0.88 16 52 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -35.74 441.54 1.13 -34.61 By element: Atomic # 1 Polarization: -22.00 SS G_CDS: -0.34 Total: -22.34 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 9.00 Total: 12.20 kcal Atomic # 7 Polarization: -3.64 SS G_CDS: -6.72 Total: -10.37 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -2.85 Total: -15.86 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.04 Total: 1.76 kcal Total: -35.74 1.13 -34.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.452 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds