Wall clock time and date at job start Sun Mar 7 2021 00:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.47397 * 2 1 4 4 C 1.50704 * 109.46621 * 119.99715 * 2 1 3 5 5 C 1.38243 * 119.97200 * 245.00100 * 4 2 1 6 6 C 1.38283 * 120.11105 * 180.02562 * 5 4 2 7 7 C 1.38129 * 120.05835 * 359.97438 * 6 5 4 8 8 C 1.38749 * 119.94051 * 359.97438 * 7 6 5 9 9 O 1.35904 * 120.05570 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99628 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.46878 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85356 * 334.66885 * 14 13 11 16 16 C 1.53780 * 113.61441 * 105.86757 * 14 13 11 17 17 C 1.53951 * 87.02099 * 139.94843 * 16 14 13 18 18 H 1.09004 * 113.53618 * 89.19033 * 17 16 14 19 19 C 1.53007 * 113.74444 * 220.05623 * 17 16 14 20 20 N 1.46500 * 109.46933 * 272.59884 * 19 17 16 21 21 C 1.34425 * 126.82053 * 125.00265 * 20 19 17 22 22 N 1.30830 * 108.07866 * 179.97438 * 21 20 19 23 23 C 1.33243 * 109.82940 * 359.97438 * 22 21 20 24 24 N 1.30714 * 108.94454 * 359.75203 * 23 22 21 25 25 C 1.53781 * 87.11250 * 334.63696 * 17 16 14 26 26 C 1.38170 * 119.97397 * 65.25653 * 4 2 1 27 27 H 0.96706 * 113.99346 * 60.00467 * 1 2 3 28 28 H 1.08994 * 109.47509 * 239.99316 * 2 1 3 29 29 H 1.48504 * 109.99849 * 298.68100 * 3 2 1 30 30 H 1.48503 * 109.99710 * 59.99459 * 3 2 1 31 31 H 1.08002 * 119.94319 * 359.97438 * 5 4 2 32 32 H 1.08006 * 119.97542 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.02665 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47382 * 59.99787 * 10 9 8 35 35 H 1.09001 * 109.46938 * 299.99774 * 10 9 8 36 36 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 37 37 H 1.08998 * 113.61756 * 254.53136 * 16 14 13 38 38 H 1.09004 * 113.61109 * 25.42851 * 16 14 13 39 39 H 1.08996 * 109.46585 * 32.59651 * 19 17 16 40 40 H 1.08997 * 109.46868 * 152.60192 * 19 17 16 41 41 H 1.08004 * 125.96114 * 359.97438 * 21 20 19 42 42 H 1.07999 * 125.53206 * 179.97438 * 23 22 21 43 43 H 1.08998 * 113.61622 * 270.81253 * 25 17 16 44 44 H 1.09003 * 113.68535 * 139.91779 * 25 17 16 45 45 H 1.08007 * 120.02501 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.6386 -0.0116 2.1911 6 6 3.1012 -0.6607 3.3211 7 6 2.8571 -2.0093 3.4930 8 6 2.1465 -2.7126 2.5310 9 8 1.9045 -4.0395 2.6980 10 6 2.4107 -4.6463 3.8887 11 6 2.0477 -6.1089 3.9004 12 8 1.4180 -6.5848 2.9796 13 7 2.4238 -6.8883 4.9337 14 6 2.0714 -8.3102 4.9447 15 1 1.1840 -8.5310 4.3517 16 6 3.2585 -9.2414 4.6472 17 6 2.6983 -10.1720 5.7382 18 1 1.9829 -10.9031 5.3615 19 6 3.7753 -10.7980 6.6266 20 7 4.2554 -12.0381 6.0119 21 6 5.5287 -12.3491 5.7139 22 7 5.5405 -13.5430 5.1788 23 6 4.2993 -14.0239 5.1195 24 7 3.4775 -13.1409 5.6231 25 6 2.0397 -8.9260 6.3535 26 6 1.6890 -2.0607 1.3954 27 1 -0.3932 0.4417 -0.7652 28 1 1.7924 -0.5139 -0.8898 29 1 1.5880 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 2.8309 1.0428 2.0583 32 1 3.6540 -0.1128 4.0699 33 1 3.2182 -2.5157 4.3759 34 1 1.9745 -4.1571 4.7596 35 1 3.4952 -4.5405 3.9176 36 1 2.9277 -6.5077 5.6699 37 1 3.2337 -9.6747 3.6474 38 1 4.2268 -8.8081 4.8979 39 1 4.6063 -10.1011 6.7358 40 1 3.3542 -11.0181 7.6076 41 1 6.3916 -11.7227 5.8860 42 1 4.0182 -14.9885 4.7233 43 1 2.6741 -8.4064 7.0716 44 1 1.0323 -9.1039 6.7298 45 1 1.1395 -2.6069 0.6429 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:27 Heat of formation + Delta-G solvation = 51.582760 kcal Electronic energy + Delta-G solvation = -28178.577094 eV Core-core repulsion = 23973.445494 eV Total energy + Delta-G solvation = -4205.131600 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.98067 -41.64315 -40.98199 -39.71311 -38.79113 -37.42093 -35.51796 -34.11618 -32.60961 -32.16379 -31.69381 -29.80361 -28.54407 -26.82082 -26.76593 -24.55209 -23.66718 -22.94162 -22.80730 -22.06396 -21.62272 -20.53221 -19.17645 -18.61254 -18.50006 -18.12444 -17.57945 -17.44456 -17.19413 -16.87494 -16.53016 -16.29905 -15.85693 -15.79317 -15.63286 -15.54365 -15.06679 -14.91480 -14.54399 -14.47640 -14.13906 -13.78089 -13.70377 -13.64291 -13.47896 -13.31851 -13.20480 -12.72365 -12.53863 -12.41480 -12.13653 -11.99627 -11.89171 -11.70876 -11.55293 -11.05453 -10.96114 -10.79174 -10.56295 -10.52062 -10.16517 -9.92438 -9.29274 -4.92652 0.19697 0.38587 0.70844 1.25799 1.38497 1.44937 1.51381 1.61388 1.93867 2.01566 2.57338 2.63130 3.34086 3.37371 3.44371 3.46135 3.54361 3.55757 3.72995 3.78626 3.83519 3.88696 4.00352 4.08735 4.12557 4.14471 4.17632 4.24741 4.26793 4.38700 4.47745 4.51881 4.64630 4.67816 4.72682 4.77383 4.91253 4.96928 5.01050 5.15483 5.22787 5.31655 5.35832 5.45438 5.46032 5.49466 5.68305 5.96911 6.26898 6.46485 6.54013 7.11643 7.13767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.099 4.099 3 Si 0.784 3.216 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.200 4.200 8 C 0.114 3.886 9 O -0.325 6.325 10 C 0.037 3.963 11 C 0.511 3.489 12 O -0.579 6.579 13 N -0.694 5.694 14 C 0.116 3.884 15 H 0.080 0.920 16 C -0.142 4.142 17 C -0.117 4.117 18 H 0.077 0.923 19 C 0.136 3.864 20 N -0.378 5.378 21 C 0.257 3.743 22 N -0.586 5.586 23 C 0.186 3.814 24 N -0.352 5.352 25 C -0.112 4.112 26 C -0.152 4.152 27 H 0.395 0.605 28 H 0.088 0.912 29 H -0.288 1.288 30 H -0.292 1.292 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.425 0.575 37 H 0.040 0.960 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.261 0.739 42 H 0.230 0.770 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 6.100 7.874 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.207 4.207 3 Si 0.688 3.312 4 C -0.048 4.048 5 C -0.178 4.178 6 C -0.087 4.087 7 C -0.219 4.219 8 C 0.069 3.931 9 O -0.239 6.239 10 C -0.041 4.041 11 C 0.297 3.703 12 O -0.458 6.458 13 N -0.348 5.348 14 C 0.011 3.989 15 H 0.098 0.902 16 C -0.180 4.180 17 C -0.137 4.137 18 H 0.095 0.905 19 C 0.016 3.984 20 N -0.168 5.168 21 C -0.039 4.039 22 N -0.314 5.314 23 C -0.117 4.117 24 N -0.181 5.181 25 C -0.151 4.151 26 C -0.171 4.171 27 H 0.245 0.755 28 H 0.106 0.894 29 H -0.215 1.215 30 H -0.219 1.219 31 H 0.162 0.838 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.265 0.735 37 H 0.059 0.941 38 H 0.134 0.866 39 H 0.164 0.836 40 H 0.120 0.880 41 H 0.276 0.724 42 H 0.246 0.754 43 H 0.149 0.851 44 H 0.099 0.901 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.822 5.942 7.634 11.837 hybrid contribution -1.425 -0.393 -0.722 1.645 sum 5.397 5.549 6.912 10.377 Atomic orbital electron populations 1.86559 1.18690 1.80906 1.50938 1.25272 0.84077 1.13004 0.98311 0.93923 0.89983 0.70828 0.76491 1.19260 0.97316 0.92414 0.95809 1.21214 1.01162 1.00624 0.94842 1.21335 0.96859 0.93624 0.96910 1.21648 1.03403 0.96243 1.00573 1.19167 0.96302 0.82375 0.95298 1.86126 1.74714 1.20798 1.42221 1.22777 1.02827 0.89927 0.88521 1.20678 0.78639 0.88695 0.82285 1.90774 1.41229 1.76133 1.37626 1.45606 1.57164 1.09078 1.22962 1.22413 0.98168 0.78938 0.99401 0.90165 1.23618 0.99697 0.96323 0.98384 1.22559 0.97946 0.96150 0.97082 0.90487 1.22232 0.99696 0.80453 0.96025 1.50751 1.05812 1.14491 1.45758 1.26904 0.89980 0.93635 0.93363 1.70537 1.24526 1.11421 1.24965 1.26423 0.86431 1.00862 0.97992 1.77956 1.20852 0.97084 1.22213 1.23309 1.02964 0.93712 0.95074 1.20308 1.04198 0.94630 0.97946 0.75505 0.89373 1.21493 1.21913 0.83767 0.81672 0.81667 0.85645 0.85164 0.73536 0.94055 0.86561 0.83607 0.88006 0.72387 0.75417 0.85102 0.90085 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.15 12.81 -148.98 -1.91 -5.06 16 2 C -0.10 -0.21 2.79 71.24 0.20 -0.01 16 3 Si 0.78 -1.37 29.85 68.60 2.05 0.67 16 4 C -0.05 -0.23 5.38 -19.88 -0.11 -0.33 16 5 C -0.16 -0.04 8.67 22.28 0.19 0.15 16 6 C -0.07 0.22 10.04 22.25 0.22 0.45 16 7 C -0.20 0.46 9.04 22.37 0.20 0.66 16 8 C 0.11 0.60 6.69 22.50 0.15 0.75 16 9 O -0.33 -2.44 9.67 -73.43 -0.71 -3.15 16 10 C 0.04 -0.13 5.22 71.24 0.37 0.24 16 11 C 0.51 1.17 7.91 87.66 0.69 1.86 16 12 O -0.58 -9.08 16.12 16.01 0.26 -8.83 16 13 N -0.69 4.69 5.36 -440.04 -2.36 2.33 16 14 C 0.12 -0.44 4.21 45.52 0.19 -0.25 16 15 H 0.08 0.35 7.50 -2.39 -0.02 0.33 16 16 C -0.14 0.72 7.45 31.18 0.23 0.95 16 17 C -0.12 0.76 3.88 -10.21 -0.04 0.72 16 18 H 0.08 0.06 8.01 -2.38 -0.02 0.04 16 19 C 0.14 -1.33 6.39 86.38 0.55 -0.78 16 20 N -0.38 0.41 3.69 -352.06 -1.30 -0.89 16 21 C 0.26 -0.46 12.63 180.36 2.28 1.81 16 22 N -0.59 -3.46 11.19 -204.00 -2.28 -5.74 16 23 C 0.19 1.07 13.03 180.76 2.36 3.43 16 24 N -0.35 -2.24 12.46 -61.24 -0.76 -3.00 16 25 C -0.11 1.20 7.39 31.12 0.23 1.43 16 26 C -0.15 -1.27 9.63 22.37 0.22 -1.06 16 27 H 0.39 -1.13 8.74 -74.05 -0.65 -1.78 16 28 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H -0.29 -0.70 7.11 99.48 0.71 0.00 16 30 H -0.29 -1.26 7.05 99.48 0.70 -0.56 16 31 H 0.15 -0.53 4.86 -2.91 -0.01 -0.54 16 32 H 0.17 -1.67 8.06 -2.91 -0.02 -1.69 16 33 H 0.17 -1.72 6.30 -2.91 -0.02 -1.74 16 34 H 0.13 -1.27 7.66 -2.39 -0.02 -1.29 16 35 H 0.13 -1.44 7.66 -2.39 -0.02 -1.46 16 36 H 0.43 -6.87 8.71 -92.71 -0.81 -7.68 16 37 H 0.04 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.12 -1.25 7.91 -2.39 -0.02 -1.27 16 39 H 0.15 -2.66 7.80 -2.39 -0.02 -2.68 16 40 H 0.10 -1.11 8.14 -2.39 -0.02 -1.12 16 41 H 0.26 -3.28 8.06 -2.91 -0.02 -3.31 16 42 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.13 -2.34 8.07 -2.39 -0.02 -2.36 16 44 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 45 H 0.11 1.26 8.06 -2.91 -0.02 1.23 16 Total: 0.00 -40.75 383.49 0.54 -40.21 By element: Atomic # 1 Polarization: -26.18 SS G_CDS: -0.38 Total: -26.56 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.94 Total: 10.02 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -6.70 Total: -7.30 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -2.36 Total: -17.04 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.05 Total: 0.67 kcal Total: -40.75 0.54 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.790 kcal (2) G-P(sol) polarization free energy of solvation -40.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds