Wall clock time and date at job start Sun Mar 7 2021 00:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37637 * 125.67695 * 2 1 4 4 C 1.46671 * 126.22589 * 359.97334 * 3 2 1 5 5 O 1.21697 * 120.00151 * 4.64952 * 4 3 2 6 6 N 1.34773 * 120.00354 * 184.65590 * 4 3 2 7 7 C 1.46498 * 120.00304 * 174.95395 * 6 4 3 8 8 H 1.08993 * 112.91178 * 23.74183 * 7 6 4 9 9 C 1.53784 * 113.61668 * 154.99527 * 7 6 4 10 10 C 1.53786 * 87.07848 * 139.97861 * 9 7 6 11 11 H 1.08996 * 113.61248 * 89.20312 * 10 9 7 12 12 C 1.53007 * 113.61013 * 220.01848 * 10 9 7 13 13 N 1.46506 * 109.46605 * 185.00182 * 12 10 9 14 14 C 1.34428 * 126.82164 * 124.71195 * 13 12 10 15 15 N 1.30823 * 108.08013 * 180.26419 * 14 13 12 16 16 C 1.33239 * 109.82995 * 359.97438 * 15 14 13 17 17 N 1.30718 * 108.94654 * 0.02562 * 16 15 14 18 18 C 1.53778 * 87.08245 * 334.56828 * 10 9 7 19 19 C 1.37891 * 107.54973 * 179.71384 * 3 2 1 20 20 C 1.39876 * 107.09228 * 0.25516 * 19 3 2 21 21 Br 1.89094 * 126.07439 * 180.02562 * 20 19 3 22 22 C 1.35505 * 107.85000 * 0.02562 * 20 19 3 23 23 C 1.50704 * 125.56492 * 179.97438 * 22 20 19 24 24 O 1.42904 * 109.46862 * 150.02678 * 23 22 20 25 25 Si 1.86293 * 109.47369 * 30.02593 * 23 22 20 26 26 H 1.09003 * 109.46764 * 95.79980 * 1 2 3 27 27 H 1.09000 * 109.47150 * 215.79710 * 1 2 3 28 28 H 1.08998 * 109.46976 * 335.80054 * 1 2 3 29 29 H 0.97005 * 119.99953 * 354.94835 * 6 4 3 30 30 H 1.09000 * 113.60984 * 25.43595 * 9 7 6 31 31 H 1.08997 * 113.61788 * 254.52694 * 9 7 6 32 32 H 1.08999 * 109.47367 * 65.00730 * 12 10 9 33 33 H 1.08993 * 109.47203 * 304.99927 * 12 10 9 34 34 H 1.08009 * 125.96119 * 0.23465 * 14 13 12 35 35 H 1.07999 * 125.53172 * 180.02562 * 16 15 14 36 36 H 1.09004 * 113.61114 * 139.98382 * 18 10 9 37 37 H 1.09004 * 113.61416 * 270.88286 * 18 10 9 38 38 H 1.08003 * 126.45324 * 180.24253 * 19 3 2 39 39 H 1.09003 * 109.47435 * 270.02322 * 23 22 20 40 40 H 0.96698 * 114.00283 * 179.97438 * 24 23 22 41 41 H 1.48504 * 110.00230 * 59.99743 * 25 23 22 42 42 H 1.48500 * 110.00071 * 181.31646 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1180 0.0000 4 6 1.8121 2.5122 -0.0006 5 8 0.6246 2.7643 0.0844 6 7 2.7085 3.5141 -0.0952 7 6 2.2485 4.9005 -0.2072 8 1 1.2474 5.0493 0.1971 9 6 3.2741 5.9321 0.2919 10 6 2.8621 6.8042 -0.9058 11 1 2.0297 7.4745 -0.6920 12 6 4.0380 7.5137 -1.5804 13 7 3.5342 8.4071 -2.6266 14 6 3.7727 9.7247 -2.7445 15 7 3.1406 10.1585 -3.8045 16 6 2.4910 9.1516 -4.3870 17 7 2.7013 8.0582 -3.7022 18 6 2.4425 5.5025 -1.6089 19 6 3.5782 0.6890 0.0066 20 6 3.5529 -0.7095 0.0046 21 35 5.0609 -1.8504 0.0120 22 6 2.2559 -1.1015 -0.0036 23 6 1.7715 -2.5286 -0.0088 24 8 0.5093 -2.6056 0.6569 25 14 3.0067 -3.6070 0.8753 26 1 -0.3633 -0.1039 -1.0225 27 1 -0.3633 -0.8335 0.6011 28 1 -0.3633 0.9374 0.4213 29 1 3.6584 3.3173 -0.0891 30 1 4.3051 5.5817 0.2428 31 1 3.0198 6.3685 1.2578 32 1 4.7030 6.7729 -2.0246 33 1 4.5855 8.0951 -0.8387 34 1 4.3799 10.3214 -2.0797 35 1 1.8884 9.2265 -5.2801 36 1 1.5169 5.5923 -2.1776 37 1 3.2463 5.0348 -2.1776 38 1 4.4583 1.3150 0.0120 39 1 1.6610 -2.8710 -1.0378 40 1 0.1364 -3.4971 0.6910 41 1 3.1664 -3.1505 2.2794 42 1 2.5562 -5.0217 0.8494 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_5000100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:41 Heat of formation + Delta-G solvation = 106.613424 kcal Electronic energy + Delta-G solvation = -27956.221568 eV Core-core repulsion = 23795.140696 eV Total energy + Delta-G solvation = -4161.080872 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.058 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.95944 -42.88174 -41.02350 -39.40388 -37.97227 -35.62967 -34.67085 -34.09141 -32.37407 -32.12895 -31.25717 -29.11939 -27.42097 -27.07376 -26.70764 -24.50848 -23.22101 -22.83327 -22.28133 -21.53124 -20.99996 -20.29875 -18.83903 -18.63790 -18.27269 -17.50403 -17.14388 -16.92156 -16.69041 -16.23115 -16.12644 -15.73643 -15.57603 -15.45974 -15.00248 -14.75449 -14.75256 -14.46826 -14.32917 -14.09865 -13.75221 -13.70309 -13.43462 -13.26382 -13.16896 -12.86564 -12.84813 -12.74168 -12.21852 -11.99986 -11.91509 -11.59717 -11.39929 -11.17290 -10.95184 -10.83138 -10.76516 -10.54212 -10.18396 -9.89260 -9.31818 -4.70065 0.12231 0.33179 0.73530 0.88125 1.22402 1.41193 1.49212 1.58266 1.93654 2.03949 2.10546 2.27883 2.88409 3.32641 3.41031 3.44558 3.52868 3.56755 3.68747 3.74272 3.78347 3.95876 4.14799 4.16936 4.19616 4.21888 4.26486 4.35787 4.40275 4.59540 4.61238 4.71571 4.73876 4.75039 4.82458 4.98568 5.06353 5.15208 5.24417 5.36564 5.48393 5.52234 5.60197 5.77085 5.98784 6.38761 6.41571 7.03734 7.16726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.391 5.391 3 C -0.064 4.064 4 C 0.590 3.410 5 O -0.583 6.583 6 N -0.688 5.688 7 C 0.116 3.884 8 H 0.091 0.909 9 C -0.112 4.112 10 C -0.111 4.111 11 H 0.083 0.917 12 C 0.134 3.866 13 N -0.379 5.379 14 C 0.256 3.744 15 N -0.587 5.587 16 C 0.182 3.818 17 N -0.343 5.343 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.195 4.195 21 Br 0.095 6.905 22 C 0.094 3.906 23 C -0.045 4.045 24 O -0.557 6.557 25 Si 0.624 3.376 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.420 0.580 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.260 0.740 35 H 0.228 0.772 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.194 0.806 39 H 0.110 0.890 40 H 0.402 0.598 41 H -0.295 1.295 42 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -0.056 1.125 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.063 5.063 3 C -0.178 4.178 4 C 0.378 3.622 5 O -0.464 6.464 6 N -0.339 5.339 7 C 0.011 3.989 8 H 0.110 0.890 9 C -0.151 4.151 10 C -0.131 4.131 11 H 0.102 0.898 12 C 0.014 3.986 13 N -0.169 5.169 14 C -0.040 4.040 15 N -0.315 5.315 16 C -0.121 4.121 17 N -0.172 5.172 18 C -0.174 4.174 19 C -0.113 4.113 20 C -0.280 4.280 21 Br 0.179 6.821 22 C -0.029 4.029 23 C -0.155 4.155 24 O -0.368 6.368 25 Si 0.525 3.475 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.259 0.741 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.163 0.837 34 H 0.275 0.725 35 H 0.244 0.756 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.211 0.789 39 H 0.128 0.872 40 H 0.254 0.746 41 H -0.222 1.222 42 H -0.177 1.177 Dipole moment (debyes) X Y Z Total from point charges 6.767 -0.589 1.662 6.993 hybrid contribution -1.751 -0.307 0.162 1.786 sum 5.016 -0.896 1.824 5.412 Atomic orbital electron populations 1.22611 0.74624 1.06183 1.04665 1.43934 1.07782 1.04076 1.50512 1.20236 0.90552 0.87783 1.19188 1.17070 0.85553 0.83978 0.75585 1.90785 1.18012 1.85106 1.52541 1.45472 1.10026 1.05276 1.73141 1.22579 0.99873 0.78952 0.97501 0.89041 1.23321 1.00399 0.93459 0.97886 1.22484 0.98187 0.95403 0.97031 0.89848 1.22240 0.95600 0.93797 0.86967 1.50790 1.36362 1.08848 1.20940 1.26910 0.97268 0.83839 0.95985 1.70534 1.16434 1.33514 1.10975 1.26420 0.99102 0.85561 1.00982 1.78010 1.13957 1.24555 1.00662 1.23454 1.01864 0.95880 0.96174 1.21519 0.95528 0.92379 1.01903 1.20625 0.90325 0.95161 1.21905 1.96297 1.32253 1.56220 1.97337 1.20064 0.89457 0.88473 1.04936 1.24370 0.93312 0.94681 1.03117 1.86365 1.34110 1.36382 1.79939 0.92912 0.93644 0.77882 0.83042 0.90056 0.86974 0.88948 0.74100 0.85800 0.89078 0.87954 0.83750 0.72483 0.75590 0.93713 0.88576 0.78884 0.87244 0.74552 1.22160 1.17721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.30 127.77 1.32 1.63 16 2 N -0.39 -2.39 3.16 -519.60 -1.64 -4.04 16 3 C -0.06 -0.26 6.88 40.35 0.28 0.02 16 4 C 0.59 3.04 7.77 86.45 0.67 3.71 16 5 O -0.58 -7.61 14.12 -4.34 -0.06 -7.67 16 6 N -0.69 2.19 5.34 -444.01 -2.37 -0.19 16 7 C 0.12 -0.36 4.27 45.52 0.19 -0.16 16 8 H 0.09 0.27 7.42 -2.39 -0.02 0.25 16 9 C -0.11 1.23 7.39 31.12 0.23 1.46 16 10 C -0.11 0.80 3.85 -10.26 -0.04 0.76 16 11 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 12 C 0.13 -1.34 6.39 86.38 0.55 -0.79 16 13 N -0.38 0.58 3.69 -352.05 -1.30 -0.72 16 14 C 0.26 -0.51 12.63 180.36 2.28 1.77 16 15 N -0.59 -3.29 11.19 -204.00 -2.28 -5.57 16 16 C 0.18 0.97 13.03 180.76 2.36 3.33 16 17 N -0.34 -1.89 12.57 -61.24 -0.77 -2.66 16 18 C -0.13 0.34 7.43 31.12 0.23 0.57 16 19 C -0.09 0.11 10.34 22.58 0.23 0.34 16 20 C -0.19 -0.23 6.15 22.03 0.14 -0.10 16 21 Br 0.10 -0.24 28.25 -20.37 -0.58 -0.82 16 22 C 0.09 0.38 6.18 41.35 0.26 0.64 16 23 C -0.04 -0.04 2.98 71.24 0.21 0.17 16 24 O -0.56 -0.58 9.79 -148.98 -1.46 -2.04 16 25 Si 0.62 1.51 27.11 68.60 1.86 3.37 16 26 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.11 0.49 5.49 -2.39 -0.01 0.47 16 28 H 0.09 0.80 5.92 -2.39 -0.01 0.79 16 29 H 0.42 -4.32 7.63 -92.70 -0.71 -5.03 16 30 H 0.12 -2.04 8.08 -2.39 -0.02 -2.06 16 31 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.10 -1.17 7.84 -2.39 -0.02 -1.19 16 33 H 0.14 -2.53 8.09 -2.39 -0.02 -2.55 16 34 H 0.26 -3.22 8.06 -2.91 -0.02 -3.25 16 35 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 36 H 0.04 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.10 -0.39 7.90 -2.38 -0.02 -0.41 16 38 H 0.19 -1.86 7.45 -2.91 -0.02 -1.89 16 39 H 0.11 -0.37 7.96 -2.39 -0.02 -0.39 16 40 H 0.40 -2.75 8.74 -74.06 -0.65 -3.39 16 41 H -0.30 -3.23 7.11 99.48 0.71 -2.53 16 42 H -0.25 -1.24 7.11 99.48 0.71 -0.53 16 Total: 0.00 -29.62 366.23 0.07 -29.54 By element: Atomic # 1 Polarization: -22.36 SS G_CDS: -0.23 Total: -22.58 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 8.90 Total: 13.35 kcal Atomic # 7 Polarization: -4.80 SS G_CDS: -8.37 Total: -13.17 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.52 Total: -9.70 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 1.86 Total: 3.37 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.58 Total: -0.82 kcal Total: -29.62 0.07 -29.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_5000100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.158 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds