Wall clock time and date at job start Sun Mar 7 2021 00:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35997 * 116.99802 * 2 1 4 4 C 1.39153 * 120.07310 * 180.02562 * 3 2 1 5 5 O 1.35999 * 120.07288 * 359.97438 * 4 3 2 6 6 C 1.42903 * 116.99581 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46603 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00260 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99982 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00118 * 179.97438 * 9 7 6 11 11 H 1.09000 * 112.85206 * 23.79873 * 10 9 7 12 12 C 1.53780 * 113.61673 * 154.99752 * 10 9 7 13 13 C 1.53780 * 87.08488 * 140.06112 * 12 10 9 14 14 H 1.09003 * 113.61137 * 89.20025 * 13 12 10 15 15 C 1.52997 * 113.61900 * 220.01941 * 13 12 10 16 16 N 1.46505 * 109.47212 * 184.99939 * 15 13 12 17 17 C 1.34431 * 126.82034 * 124.70925 * 16 15 13 18 18 N 1.30831 * 108.07452 * 179.89522 * 17 16 15 19 19 C 1.33242 * 109.83134 * 0.38128 * 18 17 16 20 20 N 1.30720 * 108.94259 * 359.76538 * 19 18 17 21 21 C 1.53787 * 87.08169 * 334.56869 * 13 12 10 22 22 C 1.38569 * 119.85343 * 180.25526 * 4 3 2 23 23 C 1.38247 * 119.99749 * 359.47128 * 22 4 3 24 24 C 1.38253 * 120.14426 * 0.50696 * 23 22 4 25 25 C 1.50699 * 119.92435 * 179.74804 * 24 23 22 26 26 O 1.42898 * 109.47265 * 245.02738 * 25 24 23 27 27 Si 1.86302 * 109.47002 * 5.02093 * 25 24 23 28 28 C 1.38240 * 120.14995 * 359.77125 * 24 23 22 29 29 H 1.08998 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47388 * 299.99381 * 1 2 3 31 31 H 1.08998 * 109.47463 * 59.99642 * 1 2 3 32 32 H 1.08995 * 109.46989 * 60.00542 * 6 5 4 33 33 H 1.09000 * 109.46919 * 300.00225 * 6 5 4 34 34 H 0.97006 * 119.99965 * 359.97438 * 9 7 6 35 35 H 1.09004 * 113.61321 * 25.51394 * 12 10 9 36 36 H 1.09003 * 113.61688 * 254.61532 * 12 10 9 37 37 H 1.09002 * 109.47153 * 64.99931 * 15 13 12 38 38 H 1.09001 * 109.46832 * 305.00122 * 15 13 12 39 39 H 1.08004 * 125.96211 * 0.03907 * 17 16 15 40 40 H 1.07997 * 125.52973 * 179.80122 * 19 18 17 41 41 H 1.08998 * 113.61477 * 139.97815 * 21 13 12 42 42 H 1.08992 * 113.61461 * 270.88344 * 21 13 12 43 43 H 1.08001 * 120.00070 * 179.72191 * 22 4 3 44 44 H 1.08001 * 119.92402 * 180.25313 * 23 22 4 45 45 H 1.08996 * 109.47155 * 125.02172 * 25 24 23 46 46 H 0.96696 * 114.00472 * 59.99390 * 26 25 24 47 47 H 1.48502 * 109.99889 * 58.68458 * 27 25 24 48 48 H 1.48501 * 110.00141 * 179.97438 * 27 25 24 49 49 H 1.07998 * 120.00121 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0005 6 6 5.6003 0.3009 -0.0005 7 6 6.2519 -1.0580 -0.0012 8 8 5.5671 -2.0589 -0.0011 9 7 7.5957 -1.1609 -0.0008 10 6 8.2291 -2.4819 -0.0008 11 1 7.5836 -3.2609 -0.4065 12 6 9.6471 -2.4851 -0.5959 13 6 10.0314 -3.4627 0.5273 14 1 9.8800 -4.5099 0.2654 15 6 11.4129 -3.1942 1.1275 16 7 11.7355 -4.2426 2.0988 17 6 12.8246 -5.0306 2.1018 18 7 12.7422 -5.8329 3.1319 19 6 11.6159 -5.5938 3.8022 20 7 10.9653 -4.6281 3.2081 21 6 8.8770 -2.8565 1.3427 22 6 4.0602 2.5235 0.0048 23 6 3.3027 3.6800 -0.0004 24 6 1.9222 3.6057 -0.0003 25 6 1.1014 4.8696 -0.0002 26 8 0.3650 4.9592 1.2211 27 14 2.2306 6.3434 -0.1540 28 6 1.2931 2.3748 0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 5.9064 0.8506 0.8895 33 1 5.9064 0.8507 -0.8905 34 1 8.1435 -0.3603 -0.0004 35 1 10.1516 -1.5213 -0.5274 36 1 9.7013 -2.9224 -1.5929 37 1 11.4102 -2.2251 1.6265 38 1 12.1598 -3.1921 0.3337 39 1 13.6285 -5.0042 1.3810 40 1 11.2930 -6.1130 4.6925 41 1 8.3095 -3.5936 1.9107 42 1 9.1709 -1.9942 1.9411 43 1 5.1385 2.5842 0.0090 44 1 3.7906 4.6435 -0.0003 45 1 0.4089 4.8531 -0.8418 46 1 0.9185 4.9784 2.0137 47 1 3.0253 6.2461 -1.4047 48 1 1.4332 7.5962 -0.1557 49 1 0.2145 2.3196 -0.0002 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:45 Heat of formation + Delta-G solvation = 16.990858 kcal Electronic energy + Delta-G solvation = -32742.039894 eV Core-core repulsion = 28061.188466 eV Total energy + Delta-G solvation = -4680.851428 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.95745 -41.84621 -41.20266 -39.93688 -39.11461 -38.80916 -36.92460 -35.48830 -34.09076 -32.13995 -32.04233 -31.47658 -29.97468 -28.68955 -28.38937 -26.71881 -26.21737 -24.60419 -23.50045 -22.84156 -22.65152 -22.26607 -21.67891 -20.69123 -19.80113 -18.62555 -18.36926 -18.25053 -17.87863 -17.53152 -17.34980 -17.02196 -16.72627 -16.67783 -16.17989 -16.10025 -15.81751 -15.73468 -15.66008 -15.50086 -15.35250 -14.98618 -14.70423 -14.48434 -14.30840 -13.79055 -13.68079 -13.62399 -13.51184 -13.43077 -13.15160 -12.87855 -12.64463 -12.55999 -12.22418 -12.18470 -12.12383 -11.98585 -11.91546 -11.76073 -11.40903 -11.00085 -10.94253 -10.77247 -10.54538 -10.43572 -10.12586 -9.80481 -8.92836 -4.97073 0.15498 0.26816 0.72787 1.33444 1.42608 1.46409 1.53460 1.67756 2.00461 2.03199 2.29225 2.55089 2.58472 3.32091 3.43987 3.48696 3.51963 3.56075 3.67254 3.70142 3.75585 3.85560 3.90542 3.94833 4.03706 4.12080 4.12603 4.14318 4.21547 4.27254 4.27602 4.34364 4.35248 4.48922 4.59170 4.62393 4.63526 4.72500 4.72847 4.82049 4.97943 4.99534 5.05867 5.11282 5.15691 5.36036 5.36166 5.47585 5.52094 5.59016 5.95716 5.98357 6.41649 6.53990 6.77431 7.15346 7.15979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.075 3.925 4 C 0.084 3.916 5 O -0.316 6.316 6 C 0.034 3.966 7 C 0.510 3.490 8 O -0.578 6.578 9 N -0.695 5.695 10 C 0.113 3.887 11 H 0.083 0.917 12 C -0.109 4.109 13 C -0.113 4.113 14 H 0.080 0.920 15 C 0.135 3.865 16 N -0.379 5.379 17 C 0.256 3.744 18 N -0.587 5.587 19 C 0.182 3.818 20 N -0.345 5.345 21 C -0.136 4.136 22 C -0.158 4.158 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.078 4.078 26 O -0.558 6.558 27 Si 0.788 3.212 28 C -0.153 4.153 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.424 0.576 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.260 0.740 40 H 0.228 0.772 41 H 0.039 0.961 42 H 0.098 0.902 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.395 0.605 47 H -0.279 1.279 48 H -0.303 1.303 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.629 8.203 -2.358 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.030 3.970 4 C 0.039 3.961 5 O -0.230 6.230 6 C -0.043 4.043 7 C 0.296 3.704 8 O -0.457 6.457 9 N -0.349 5.349 10 C 0.008 3.992 11 H 0.101 0.899 12 C -0.148 4.148 13 C -0.133 4.133 14 H 0.098 0.902 15 C 0.015 3.985 16 N -0.170 5.170 17 C -0.040 4.040 18 N -0.315 5.315 19 C -0.120 4.120 20 N -0.173 5.173 21 C -0.175 4.175 22 C -0.176 4.176 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.187 4.187 26 O -0.366 6.366 27 Si 0.694 3.306 28 C -0.172 4.172 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.163 0.837 39 H 0.276 0.724 40 H 0.244 0.756 41 H 0.058 0.942 42 H 0.117 0.883 43 H 0.196 0.804 44 H 0.179 0.821 45 H 0.120 0.880 46 H 0.245 0.755 47 H -0.206 1.206 48 H -0.232 1.232 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.402 7.895 -2.963 11.221 hybrid contribution -0.929 -0.558 -0.251 1.113 sum 6.472 7.338 -3.214 10.299 Atomic orbital electron populations 1.23273 0.76865 1.05169 1.02058 1.86189 1.22962 1.26736 1.89125 1.18693 0.90007 0.85555 1.02783 1.18611 0.88153 0.86623 1.02757 1.86231 1.18359 1.29115 1.89304 1.22808 0.79262 0.95108 1.07145 1.20687 0.83372 0.90838 0.75472 1.90776 1.64307 1.40403 1.50168 1.45618 1.04927 1.10031 1.74365 1.22496 0.93827 0.85127 0.97750 0.89901 1.23302 0.92270 1.01024 0.98157 1.22499 0.93514 0.99897 0.97416 0.90161 1.22240 0.98159 0.88431 0.89700 1.50791 1.16028 1.29227 1.20906 1.26923 0.92576 0.87336 0.97171 1.70536 1.22675 1.28870 1.09381 1.26421 0.89643 0.94925 1.01046 1.78012 1.20074 1.18612 1.00591 1.23453 0.96791 1.00767 0.96466 1.21407 1.02367 0.89201 1.04671 1.21018 0.92165 0.99030 1.00291 1.20211 0.94612 0.94758 1.02475 1.25291 1.01060 1.02386 0.89925 1.86466 1.37555 1.96651 1.15923 0.93670 0.79222 0.72387 0.85359 1.21012 1.00442 0.90663 1.05107 0.87131 0.91721 0.91880 0.85264 0.85311 0.73676 0.85488 0.89239 0.87837 0.83701 0.72424 0.75595 0.94159 0.88320 0.80414 0.82056 0.87995 0.75455 1.20555 1.23178 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 113.37 1.11 1.18 16 2 O -0.34 -3.99 10.28 -79.66 -0.82 -4.81 16 3 C 0.07 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.46 6.70 22.57 0.15 0.61 16 5 O -0.32 -2.75 9.46 -67.13 -0.63 -3.38 16 6 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 7 C 0.51 1.75 7.91 87.66 0.69 2.44 16 8 O -0.58 -9.82 16.10 16.01 0.26 -9.57 16 9 N -0.70 3.81 5.36 -440.03 -2.36 1.46 16 10 C 0.11 -0.34 4.24 45.52 0.19 -0.14 16 11 H 0.08 0.38 7.46 -2.39 -0.02 0.36 16 12 C -0.11 1.25 7.39 31.12 0.23 1.48 16 13 C -0.11 0.79 3.85 -10.27 -0.04 0.75 16 14 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 15 C 0.13 -1.37 6.39 86.38 0.55 -0.82 16 16 N -0.38 0.56 3.69 -352.05 -1.30 -0.74 16 17 C 0.26 -0.50 12.63 180.36 2.28 1.78 16 18 N -0.59 -3.37 11.19 -203.99 -2.28 -5.66 16 19 C 0.18 1.02 13.03 180.76 2.36 3.38 16 20 N -0.34 -2.00 12.57 -61.24 -0.77 -2.77 16 21 C -0.14 0.29 7.43 31.13 0.23 0.52 16 22 C -0.16 0.51 9.04 22.35 0.20 0.71 16 23 C -0.11 0.42 8.66 22.28 0.19 0.62 16 24 C -0.12 -0.01 5.35 -19.86 -0.11 -0.11 16 25 C -0.08 0.09 2.80 71.24 0.20 0.29 16 26 O -0.56 0.03 12.83 -148.98 -1.91 -1.88 16 27 Si 0.79 -3.51 29.79 68.60 2.04 -1.47 16 28 C -0.15 -0.65 8.67 22.35 0.19 -0.46 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.07 7.66 -2.39 -0.02 0.05 16 31 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 32 H 0.13 -1.35 7.65 -2.39 -0.02 -1.37 16 33 H 0.13 -1.35 7.67 -2.39 -0.02 -1.37 16 34 H 0.42 -6.25 8.73 -92.70 -0.81 -7.06 16 35 H 0.13 -2.25 8.08 -2.38 -0.02 -2.27 16 36 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 37 H 0.10 -1.24 7.84 -2.39 -0.02 -1.26 16 38 H 0.15 -2.59 8.09 -2.39 -0.02 -2.61 16 39 H 0.26 -3.26 8.06 -2.91 -0.02 -3.28 16 40 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 43 H 0.18 -2.14 6.30 -2.91 -0.02 -2.16 16 44 H 0.16 -1.67 4.89 -2.91 -0.01 -1.69 16 45 H 0.10 0.05 7.96 -2.39 -0.02 0.03 16 46 H 0.40 -3.26 8.70 -74.06 -0.64 -3.90 16 47 H -0.28 0.19 7.11 99.48 0.71 0.89 16 48 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 49 H 0.14 0.43 6.30 -2.91 -0.02 0.41 16 Total: 0.00 -43.30 412.89 0.79 -42.51 By element: Atomic # 1 Polarization: -26.58 SS G_CDS: -0.40 Total: -26.98 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 8.96 Total: 13.29 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -6.71 Total: -7.71 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -3.11 Total: -19.64 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.04 Total: -1.47 kcal Total: -43.30 0.79 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.505 kcal (2) G-P(sol) polarization free energy of solvation -43.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds