Wall clock time and date at job start Sun Mar 7 2021 00:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86301 * 109.46621 * 2 1 4 4 C 1.50700 * 109.47285 * 119.99704 * 2 1 3 5 5 C 1.38235 * 119.93727 * 65.00222 * 4 2 1 6 6 C 1.38190 * 120.06842 * 179.97438 * 5 4 2 7 7 C 1.38680 * 119.95396 * 0.02707 * 6 5 4 8 8 O 1.35914 * 120.05743 * 179.97438 * 7 6 5 9 9 C 1.42907 * 117.00158 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.47363 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99878 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00483 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00553 * 180.02562 * 12 10 9 14 14 H 1.09007 * 112.84791 * 23.79948 * 13 12 10 15 15 C 1.53779 * 113.61728 * 154.99579 * 13 12 10 16 16 C 1.53780 * 87.07907 * 139.97941 * 15 13 12 17 17 H 1.09005 * 113.61064 * 89.12037 * 16 15 13 18 18 C 1.52997 * 113.61726 * 220.02022 * 16 15 13 19 19 N 1.46501 * 109.47187 * 185.00405 * 18 16 15 20 20 C 1.34435 * 126.81938 * 124.70696 * 19 18 16 21 21 N 1.30831 * 108.07235 * 179.89101 * 20 19 18 22 22 C 1.33243 * 109.82951 * 0.38548 * 21 20 19 23 23 N 1.30714 * 108.94818 * 359.75826 * 22 21 20 24 24 C 1.53772 * 113.61428 * 252.49826 * 13 12 10 25 25 C 1.38832 * 119.88322 * 359.97438 * 7 6 5 26 26 Br 1.89100 * 120.03416 * 180.02562 * 25 7 6 27 27 C 1.38193 * 119.92698 * 0.27327 * 25 7 6 28 28 H 0.96694 * 113.99760 * 299.99464 * 1 2 3 29 29 H 1.08996 * 109.46897 * 240.00391 * 2 1 3 30 30 H 1.48503 * 109.99926 * 178.68484 * 3 2 1 31 31 H 1.48501 * 110.00072 * 299.99677 * 3 2 1 32 32 H 1.07996 * 119.96815 * 0.02562 * 5 4 2 33 33 H 1.08003 * 120.02514 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47381 * 300.00317 * 9 8 7 35 35 H 1.09001 * 109.46795 * 60.00264 * 9 8 7 36 36 H 0.97004 * 119.99347 * 359.97438 * 12 10 9 37 37 H 1.08995 * 113.61682 * 254.53568 * 15 13 12 38 38 H 1.09006 * 113.61346 * 25.43486 * 15 13 12 39 39 H 1.09006 * 109.47120 * 305.00397 * 18 16 15 40 40 H 1.08996 * 109.47471 * 64.99817 * 18 16 15 41 41 H 1.07998 * 125.96046 * 0.04325 * 20 19 18 42 42 H 1.08001 * 125.52382 * 179.79917 * 22 21 20 43 43 H 1.08999 * 113.61770 * 334.56722 * 24 13 12 44 44 H 1.09008 * 113.61712 * 105.46646 * 24 13 12 45 45 H 1.07997 * 119.97783 * 179.72813 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7103 1.2305 5 6 1.6842 -2.0601 1.3971 6 6 2.1440 -2.7143 2.5242 7 6 2.8538 -2.0156 3.4891 8 8 3.3067 -2.6568 4.5987 9 6 3.0158 -4.0519 4.7059 10 6 3.5928 -4.5880 5.9908 11 8 4.1934 -3.8481 6.7410 12 7 3.4413 -5.8895 6.3062 13 6 4.0016 -6.4105 7.5554 14 1 4.1393 -5.6381 8.3122 15 6 3.2804 -7.6639 8.0786 16 6 4.6681 -8.2088 8.4558 17 1 4.9892 -7.9287 9.4591 18 6 4.8381 -9.7025 8.1714 19 7 6.1405 -10.1497 8.6715 20 6 6.3704 -11.1546 9.5343 21 7 7.6620 -11.2377 9.7257 22 6 8.2858 -10.3014 9.0119 23 7 7.3963 -9.6097 8.3495 24 6 5.2373 -7.3027 7.3514 25 6 3.1011 -0.6600 3.3198 26 35 4.0691 0.2968 4.6326 27 6 2.6345 -0.0096 2.1933 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 3.5346 1.7705 0.0320 31 1 1.5614 2.4679 -1.2085 32 1 1.1317 -2.6042 0.6454 33 1 1.9501 -3.7689 2.6538 34 1 1.9359 -4.1992 4.7028 35 1 3.4572 -4.5809 3.8613 36 1 2.9606 -6.4811 5.7063 37 1 2.6384 -7.4715 8.9381 38 1 2.7829 -8.2393 7.2978 39 1 4.0460 -10.2600 8.6714 40 1 4.7822 -9.8765 7.0969 41 1 5.6201 -11.7850 9.9881 42 1 9.3535 -10.1406 8.9846 43 1 5.2749 -7.7793 6.3718 44 1 6.1752 -6.8187 7.6239 45 1 2.8225 1.0459 2.0629 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:51 Heat of formation + Delta-G solvation = 59.427641 kcal Electronic energy + Delta-G solvation = -30343.730817 eV Core-core repulsion = 25799.121394 eV Total energy + Delta-G solvation = -4544.609423 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.063 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.00704 -41.79820 -41.15974 -39.87115 -38.95249 -37.29342 -35.57965 -34.17364 -33.50795 -32.22261 -32.14097 -30.63488 -29.91833 -28.80919 -26.96955 -26.46689 -24.82724 -23.90633 -22.91210 -22.66108 -22.33358 -21.74856 -20.91732 -19.65707 -18.64374 -18.44637 -18.12312 -17.63550 -17.50886 -17.08437 -16.84327 -16.57740 -16.18903 -16.08817 -15.85903 -15.68448 -15.66778 -15.31063 -15.05935 -14.78331 -14.70864 -14.34515 -14.11636 -13.98878 -13.88932 -13.69825 -13.51686 -13.26061 -13.01230 -12.53078 -12.40831 -12.35384 -12.19353 -12.10845 -11.88124 -11.82102 -11.60773 -11.07482 -10.97135 -10.92917 -10.74615 -10.64571 -10.53551 -10.23151 -10.04581 -9.35088 -5.09422 -0.09943 0.00702 0.66378 0.68292 1.21106 1.24575 1.31547 1.39292 1.58321 1.92301 2.04785 2.31282 2.36652 3.03692 3.18283 3.28533 3.36078 3.38162 3.42628 3.42830 3.52096 3.61921 3.65399 3.74763 3.79858 3.81117 3.90643 3.96025 3.96795 4.03892 4.23734 4.33898 4.35783 4.40455 4.49012 4.51045 4.53882 4.70058 4.72901 4.91860 4.94713 4.98234 5.19890 5.27888 5.30407 5.35989 5.47802 5.79709 5.93419 6.23833 6.47776 7.00540 7.13534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.060 4.060 3 Si 0.676 3.324 4 C -0.152 4.152 5 C -0.035 4.035 6 C -0.205 4.205 7 C 0.161 3.839 8 O -0.274 6.274 9 C 0.037 3.963 10 C 0.517 3.483 11 O -0.505 6.505 12 N -0.718 5.718 13 C 0.125 3.875 14 H 0.119 0.881 15 C -0.136 4.136 16 C -0.120 4.120 17 H 0.101 0.899 18 C 0.141 3.859 19 N -0.380 5.380 20 C 0.252 3.748 21 N -0.547 5.547 22 C 0.197 3.803 23 N -0.312 5.312 24 C -0.135 4.135 25 C -0.119 4.119 26 Br -0.023 7.023 27 C -0.048 4.048 28 H 0.380 0.620 29 H 0.116 0.884 30 H -0.253 1.253 31 H -0.250 1.250 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.218 0.782 42 H 0.217 0.783 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -4.381 -0.981 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.171 4.171 3 Si 0.578 3.422 4 C -0.153 4.153 5 C -0.053 4.053 6 C -0.224 4.224 7 C 0.113 3.887 8 O -0.185 6.185 9 C -0.042 4.042 10 C 0.301 3.699 11 O -0.378 6.378 12 N -0.371 5.371 13 C 0.020 3.980 14 H 0.137 0.863 15 C -0.175 4.175 16 C -0.139 4.139 17 H 0.119 0.881 18 C 0.019 3.981 19 N -0.171 5.171 20 C -0.045 4.045 21 N -0.273 5.273 22 C -0.106 4.106 23 N -0.140 5.140 24 C -0.174 4.174 25 C -0.199 4.199 26 Br 0.063 6.937 27 C -0.067 4.067 28 H 0.228 0.772 29 H 0.134 0.866 30 H -0.178 1.178 31 H -0.175 1.175 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.235 0.765 42 H 0.233 0.767 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.052 -2.698 -1.046 5.822 hybrid contribution -0.654 -1.534 -0.794 1.847 sum -5.706 -4.231 -1.840 7.338 Atomic orbital electron populations 1.86510 1.16949 1.81667 1.49341 1.24931 0.85287 1.09914 0.96975 0.94831 0.81601 0.78117 0.87665 1.20249 1.02330 0.95112 0.97652 1.20943 0.94940 0.93417 0.96033 1.21286 1.04243 1.00916 0.95960 1.18633 0.92968 0.90737 0.86389 1.86285 1.72835 1.21423 1.37946 1.22560 1.01954 0.81870 0.97793 1.19992 0.80403 0.82458 0.87067 1.90817 1.39512 1.56869 1.50565 1.45773 1.58466 1.09311 1.23565 1.22547 0.94081 0.94810 0.86562 0.86318 1.23387 0.96063 0.96049 1.02007 1.22628 0.97420 0.92894 1.00991 0.88054 1.21857 0.79671 0.95625 1.00981 1.50584 1.06856 1.25318 1.34342 1.26137 0.95188 0.91406 0.91752 1.70568 1.04110 1.25632 1.27039 1.26083 1.01059 0.90595 0.92830 1.78092 0.88686 1.22532 1.24682 1.23469 0.98729 0.96611 0.98600 1.21000 1.08091 0.92448 0.98401 1.96822 1.72249 1.72769 1.51883 1.20831 0.95286 0.99434 0.91173 0.77244 0.86633 1.17786 1.17464 0.84515 0.84324 0.88445 0.88535 0.76310 0.89799 0.88917 0.87665 0.89086 0.76544 0.76708 0.89433 0.90267 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.42 12.83 -35.23 -0.45 -0.03 16 2 C -0.06 0.07 2.80 36.01 0.10 0.17 16 3 Si 0.68 -0.80 29.80 -169.99 -5.07 -5.87 16 4 C -0.15 0.10 5.35 -104.60 -0.56 -0.46 16 5 C -0.03 0.04 9.68 -39.60 -0.38 -0.34 16 6 C -0.20 0.26 9.04 -39.44 -0.36 -0.10 16 7 C 0.16 0.19 6.68 -39.20 -0.26 -0.07 16 8 O -0.27 -0.58 9.01 -39.38 -0.35 -0.93 16 9 C 0.04 -0.07 5.22 36.00 0.19 0.12 16 10 C 0.52 0.22 7.91 -10.99 -0.09 0.13 16 11 O -0.50 -2.89 16.10 -14.36 -0.23 -3.12 16 12 N -0.72 2.15 5.35 -53.02 -0.28 1.86 16 13 C 0.12 -0.28 4.24 -67.13 -0.28 -0.57 16 14 H 0.12 0.01 7.46 -51.93 -0.39 -0.37 16 15 C -0.14 0.69 7.39 -25.92 -0.19 0.50 16 16 C -0.12 0.42 3.85 -89.81 -0.35 0.07 16 17 H 0.10 -0.20 8.14 -51.93 -0.42 -0.63 16 18 C 0.14 -0.58 6.39 -4.04 -0.03 -0.61 16 19 N -0.38 0.20 3.69 -62.63 -0.23 -0.04 16 20 C 0.25 -0.14 12.63 -90.65 -1.14 -1.28 16 21 N -0.55 -1.41 11.19 -15.83 -0.18 -1.59 16 22 C 0.20 0.40 13.03 -91.81 -1.20 -0.80 16 23 N -0.31 -0.70 12.57 29.29 0.37 -0.34 16 24 C -0.14 0.25 7.43 -25.93 -0.19 0.06 16 25 C -0.12 -0.22 6.24 -39.38 -0.25 -0.46 16 26 Br -0.02 -0.07 33.16 -68.01 -2.26 -2.32 16 27 C -0.05 0.00 8.40 -39.58 -0.33 -0.34 16 28 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 29 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 31 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 32 H 0.14 -0.33 8.06 -52.49 -0.42 -0.75 16 33 H 0.14 -0.58 6.30 -52.48 -0.33 -0.91 16 34 H 0.10 -0.47 7.66 -51.93 -0.40 -0.86 16 35 H 0.10 -0.43 7.66 -51.93 -0.40 -0.83 16 36 H 0.40 -2.58 8.73 -40.82 -0.36 -2.94 16 37 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 38 H 0.09 -0.63 8.08 -51.93 -0.42 -1.05 16 39 H 0.11 -0.73 8.09 -51.93 -0.42 -1.15 16 40 H 0.09 -0.42 7.84 -51.93 -0.41 -0.83 16 41 H 0.22 -1.09 8.06 -52.49 -0.42 -1.51 16 42 H 0.22 -0.18 8.06 -52.49 -0.42 -0.61 16 43 H 0.09 -0.20 7.90 -51.93 -0.41 -0.61 16 44 H 0.08 0.06 8.14 -51.92 -0.42 -0.36 16 45 H 0.14 -0.19 4.91 -52.49 -0.26 -0.45 16 LS Contribution 404.07 15.07 6.09 6.09 Total: 0.00 -13.35 404.07 -13.45 -26.80 By element: Atomic # 1 Polarization: -10.99 SS G_CDS: -5.54 Total: -16.53 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -5.32 Total: -3.99 kcal Atomic # 7 Polarization: 0.23 SS G_CDS: -0.32 Total: -0.09 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -1.04 Total: -4.08 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.07 Total: -5.87 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.26 Total: -2.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -13.35 -13.45 -26.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.224 kcal (2) G-P(sol) polarization free energy of solvation -13.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds