Wall clock time and date at job start Sun Mar 7 2021 00:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47159 * 2 1 4 4 C 1.50700 * 109.47509 * 119.99740 * 2 1 3 5 5 C 1.35447 * 125.56729 * 245.00246 * 4 2 1 6 6 C 1.39838 * 107.86646 * 179.97438 * 5 4 2 7 7 C 1.37870 * 107.08469 * 0.02562 * 6 5 4 8 8 C 1.46678 * 126.23340 * 180.02562 * 7 6 5 9 9 O 1.21692 * 120.00102 * 359.95395 * 8 7 6 10 10 N 1.34784 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99540 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84958 * 336.19038 * 11 10 8 13 13 C 1.53778 * 113.61403 * 107.50378 * 11 10 8 14 14 C 1.53779 * 87.08235 * 139.98039 * 13 11 10 15 15 H 1.08995 * 113.61809 * 89.11630 * 14 13 11 16 16 C 1.53002 * 113.68687 * 220.00790 * 14 13 11 17 17 N 1.46497 * 109.47100 * 272.53190 * 16 14 13 18 18 C 1.34425 * 126.82607 * 124.70848 * 17 16 14 19 19 N 1.30833 * 108.08097 * 179.89271 * 18 17 16 20 20 C 1.33249 * 109.82594 * 0.38375 * 19 18 17 21 21 N 1.30709 * 108.94547 * 359.76397 * 20 19 18 22 22 C 1.53785 * 113.60947 * 204.99861 * 11 10 8 23 23 N 1.35537 * 125.55958 * 64.99907 * 4 2 1 24 24 H 0.96704 * 113.99371 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.47074 * 240.00098 * 2 1 3 26 26 H 1.48502 * 110.00078 * 300.00271 * 3 2 1 27 27 H 1.48496 * 110.00368 * 61.31873 * 3 2 1 28 28 H 1.07997 * 126.06712 * 359.96316 * 5 4 2 29 29 H 1.07993 * 126.46063 * 179.97438 * 6 5 4 30 30 H 0.96998 * 120.00394 * 359.97438 * 10 8 7 31 31 H 1.09010 * 113.61201 * 254.52684 * 13 11 10 32 32 H 1.09000 * 113.61829 * 25.42278 * 13 11 10 33 33 H 1.08997 * 109.47036 * 32.53263 * 16 14 13 34 34 H 1.09006 * 109.46824 * 152.53423 * 16 14 13 35 35 H 1.08000 * 125.95769 * 0.04796 * 18 17 16 36 36 H 1.07997 * 125.52282 * 179.78913 * 20 19 18 37 37 H 1.08995 * 113.61170 * 334.56285 * 22 11 10 38 38 H 1.08990 * 113.61204 * 105.46988 * 22 11 10 39 39 H 0.97000 * 125.67610 * 0.26945 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6330 -0.1393 2.2385 6 6 2.9073 -1.1308 3.1858 7 6 2.3533 -2.3030 2.7171 8 6 2.3933 -3.6085 3.3846 9 8 2.9567 -3.7266 4.4568 10 7 1.8064 -4.6773 2.8103 11 6 1.8459 -5.9811 3.4774 12 1 2.6803 -6.0759 4.1723 13 6 0.4943 -6.4098 4.0724 14 6 0.8154 -7.8296 3.5764 15 1 1.3670 -8.4304 4.2994 16 6 -0.3927 -8.5644 2.9919 17 7 -1.1114 -9.2541 4.0661 18 6 -2.4126 -9.1245 4.3775 19 7 -2.6669 -9.9084 5.3937 20 6 -1.5560 -10.5453 5.7623 21 7 -0.5763 -10.1775 4.9791 22 6 1.7096 -7.1709 2.5126 23 7 1.7549 -2.0250 1.5090 24 1 -0.3932 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 1.5614 2.4679 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 2.9284 0.8977 2.2998 29 1 3.4512 -1.0026 4.1098 30 1 1.3573 -4.5832 1.9557 31 1 0.4492 -6.3265 5.1583 32 1 -0.3644 -5.9576 3.5762 33 1 -1.0578 -7.8461 2.5126 34 1 -0.0534 -9.2930 2.2555 35 1 -3.1245 -8.4867 3.8749 36 1 -1.4780 -11.2511 6.5759 37 1 1.1831 -6.9268 1.5900 38 1 2.6455 -7.7019 2.3393 39 1 1.2880 -2.6643 0.9484 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:09:59 Heat of formation + Delta-G solvation = 98.974914 kcal Electronic energy + Delta-G solvation = -23702.210430 eV Core-core repulsion = 20036.153949 eV Total energy + Delta-G solvation = -3666.056481 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.00734 -42.54892 -41.01920 -39.42935 -37.81164 -35.57717 -34.16876 -32.19388 -32.15081 -31.39704 -29.14171 -26.99213 -26.79678 -24.73987 -23.23771 -22.95829 -22.22841 -21.49191 -21.36197 -20.68794 -19.69303 -18.43049 -18.16692 -17.45220 -16.74180 -16.68154 -16.43962 -16.24462 -16.02530 -15.78515 -15.29377 -15.16389 -15.06620 -14.71189 -14.41292 -14.30355 -14.00213 -13.78059 -13.62102 -13.52750 -13.26619 -12.76277 -12.45842 -12.33515 -11.94038 -11.89182 -11.59471 -11.36298 -10.99673 -10.83425 -10.81106 -10.55405 -10.26216 -10.08301 -9.30171 -4.82379 0.27167 0.68141 1.22898 1.43042 1.53172 1.69934 1.88703 1.98727 2.00211 2.21574 2.23624 3.31567 3.36494 3.41598 3.43912 3.51893 3.59215 3.68683 3.79478 3.85696 4.11452 4.14135 4.24249 4.30277 4.37042 4.48078 4.51735 4.62209 4.69691 4.73523 4.86195 4.94920 4.97510 5.09372 5.11896 5.29027 5.42720 5.44345 5.57699 5.77120 5.93380 6.27501 6.40754 6.45613 7.01723 7.11298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.060 4.060 3 Si 0.790 3.210 4 C 0.035 3.965 5 C -0.207 4.207 6 C -0.120 4.120 7 C -0.062 4.062 8 C 0.588 3.412 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.117 3.883 12 H 0.090 0.910 13 C -0.142 4.142 14 C -0.115 4.115 15 H 0.082 0.918 16 C 0.136 3.864 17 N -0.378 5.378 18 C 0.256 3.744 19 N -0.586 5.586 20 C 0.186 3.814 21 N -0.350 5.350 22 C -0.115 4.115 23 N -0.509 5.509 24 H 0.390 0.610 25 H 0.137 0.863 26 H -0.299 1.299 27 H -0.284 1.284 28 H 0.164 0.836 29 H 0.142 0.858 30 H 0.413 0.587 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.258 0.742 36 H 0.231 0.769 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 2.149 -8.559 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.169 4.169 3 Si 0.694 3.306 4 C -0.084 4.084 5 C -0.231 4.231 6 C -0.147 4.147 7 C -0.176 4.176 8 C 0.377 3.623 9 O -0.454 6.454 10 N -0.353 5.353 11 C 0.012 3.988 12 H 0.108 0.892 13 C -0.181 4.181 14 C -0.135 4.135 15 H 0.100 0.900 16 C 0.016 3.984 17 N -0.168 5.168 18 C -0.040 4.040 19 N -0.314 5.314 20 C -0.117 4.117 21 N -0.179 5.179 22 C -0.153 4.153 23 N -0.106 5.106 24 H 0.239 0.761 25 H 0.155 0.845 26 H -0.227 1.227 27 H -0.210 1.210 28 H 0.182 0.818 29 H 0.160 0.840 30 H 0.250 0.750 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.160 0.840 34 H 0.121 0.879 35 H 0.274 0.726 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.105 2.131 -8.287 8.558 hybrid contribution -1.360 -0.425 0.434 1.490 sum -1.465 1.706 -7.853 8.169 Atomic orbital electron populations 1.86579 1.18027 1.80475 1.50453 1.25007 0.83622 1.11890 0.96338 0.93299 0.90328 0.70468 0.76547 1.21238 1.03647 0.84206 0.99340 1.20937 1.06230 1.00802 0.95091 1.21485 1.01445 0.91204 1.00587 1.20261 1.10767 0.95278 0.91306 1.17316 0.77788 0.83192 0.84049 1.90854 1.46298 1.85116 1.23142 1.45694 1.56668 1.08151 1.24816 1.22473 0.98475 0.81344 0.96518 0.89206 1.23579 0.98392 0.95497 1.00629 1.22523 0.96667 0.94881 0.99413 0.90006 1.22215 0.94121 0.96463 0.85638 1.50747 1.08569 1.31841 1.25686 1.26873 0.86442 0.97292 0.93358 1.70546 1.30339 1.14229 1.16264 1.26448 0.85577 0.99778 0.99862 1.77955 1.23991 1.10057 1.05886 1.23320 1.00777 0.93614 0.97631 1.41852 1.42580 1.09534 1.16677 0.76057 0.84487 1.22657 1.21037 0.81824 0.83989 0.75014 0.93610 0.87235 0.84018 0.87950 0.72591 0.75282 0.85746 0.89764 0.73041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.20 12.88 -148.98 -1.92 0.28 16 2 C -0.06 0.40 3.08 71.24 0.22 0.62 16 3 Si 0.79 -4.80 30.56 68.60 2.10 -2.70 16 4 C 0.03 -0.15 6.46 41.34 0.27 0.12 16 5 C -0.21 0.31 9.32 22.01 0.21 0.52 16 6 C -0.12 -0.39 10.65 22.57 0.24 -0.15 16 7 C -0.06 -0.10 7.06 40.35 0.28 0.19 16 8 C 0.59 2.63 7.79 86.45 0.67 3.31 16 9 O -0.57 -8.25 16.48 -4.32 -0.07 -8.32 16 10 N -0.70 2.92 5.35 -443.98 -2.38 0.54 16 11 C 0.12 -0.36 4.24 45.52 0.19 -0.17 16 12 H 0.09 0.33 7.46 -2.39 -0.02 0.32 16 13 C -0.14 0.62 7.43 31.12 0.23 0.85 16 14 C -0.11 0.70 3.87 -10.26 -0.04 0.66 16 15 H 0.08 0.03 8.00 -2.39 -0.02 0.02 16 16 C 0.14 -1.23 6.39 86.38 0.55 -0.68 16 17 N -0.38 0.24 3.69 -352.06 -1.30 -1.06 16 18 C 0.26 -0.31 12.63 180.36 2.28 1.97 16 19 N -0.59 -3.62 11.19 -204.00 -2.28 -5.91 16 20 C 0.19 1.08 13.03 180.76 2.36 3.44 16 21 N -0.35 -2.23 12.45 -61.24 -0.76 -3.00 16 22 C -0.11 1.13 7.39 31.12 0.23 1.36 16 23 N -0.51 2.57 5.99 -171.93 -1.03 1.54 16 24 H 0.39 -3.24 8.70 -74.05 -0.64 -3.88 16 25 H 0.14 -1.34 7.96 -2.39 -0.02 -1.36 16 26 H -0.30 -0.42 7.11 99.48 0.71 0.29 16 27 H -0.28 0.32 7.11 99.48 0.71 1.03 16 28 H 0.16 -0.82 6.19 -2.91 -0.02 -0.84 16 29 H 0.14 0.64 8.06 -2.91 -0.02 0.62 16 30 H 0.41 -4.84 7.86 -92.71 -0.73 -5.57 16 31 H 0.04 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.11 -0.98 7.90 -2.39 -0.02 -1.00 16 33 H 0.14 -2.39 7.79 -2.39 -0.02 -2.41 16 34 H 0.10 -1.04 8.14 -2.38 -0.02 -1.06 16 35 H 0.26 -3.01 8.06 -2.91 -0.02 -3.04 16 36 H 0.23 0.05 8.06 -2.91 -0.02 0.02 16 37 H 0.12 -2.01 8.08 -2.39 -0.02 -2.03 16 38 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.43 -4.78 8.19 -92.71 -0.76 -5.54 16 Total: 0.00 -30.77 338.88 -0.93 -31.70 By element: Atomic # 1 Polarization: -24.12 SS G_CDS: -0.98 Total: -25.10 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.69 Total: 12.03 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -7.75 Total: -7.88 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -1.99 Total: -8.04 kcal Atomic # 14 Polarization: -4.80 SS G_CDS: 2.10 Total: -2.70 kcal Total: -30.77 -0.93 -31.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.674 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds