Wall clock time and date at job start Sun Mar 7 2021 00:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33819 * 122.44431 * 2 1 4 4 C 1.50705 * 124.52575 * 359.94898 * 3 2 1 5 5 O 1.42902 * 109.46831 * 235.11547 * 4 3 2 6 6 Si 1.86296 * 109.47405 * 115.11430 * 4 3 2 7 7 S 1.70619 * 110.95491 * 180.25567 * 3 2 1 8 8 C 1.75839 * 91.55982 * 359.72727 * 7 3 2 9 9 C 1.46579 * 125.45517 * 179.97438 * 8 7 3 10 10 O 1.21709 * 119.99892 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00245 * 0.03083 * 9 8 7 12 12 C 1.46506 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.84652 * 23.80469 * 12 11 9 14 14 C 1.53781 * 113.61305 * 154.99702 * 12 11 9 15 15 C 1.53780 * 87.07934 * 139.98274 * 14 12 11 16 16 H 1.09002 * 113.61480 * 89.11814 * 15 14 12 17 17 C 1.52997 * 113.61401 * 219.93426 * 15 14 12 18 18 N 1.46502 * 109.46864 * 184.99867 * 17 15 14 19 19 C 1.34438 * 126.82230 * 125.00274 * 18 17 15 20 20 N 1.30830 * 108.07906 * 179.97438 * 19 18 17 21 21 C 1.33243 * 109.82873 * 359.97438 * 20 19 18 22 22 N 1.30715 * 108.94666 * 359.75732 * 21 20 19 23 23 C 1.53775 * 113.61378 * 252.49537 * 12 11 9 24 24 C 1.36649 * 109.08387 * 0.02562 * 8 7 3 25 25 H 1.09004 * 109.46834 * 275.70780 * 1 2 3 26 26 H 1.08995 * 109.47706 * 35.71737 * 1 2 3 27 27 H 1.09008 * 109.46547 * 155.71669 * 1 2 3 28 28 H 1.09004 * 109.46623 * 355.11281 * 4 3 2 29 29 H 0.96699 * 113.99641 * 179.97438 * 5 4 3 30 30 H 1.48500 * 109.99783 * 298.68240 * 6 4 3 31 31 H 1.48506 * 109.99737 * 59.99920 * 6 4 3 32 32 H 0.96998 * 120.00033 * 359.97438 * 11 9 8 33 33 H 1.09004 * 113.61370 * 254.52990 * 14 12 11 34 34 H 1.08996 * 113.61463 * 25.43904 * 14 12 11 35 35 H 1.08990 * 109.47300 * 304.99971 * 17 15 14 36 36 H 1.09005 * 109.46986 * 65.00603 * 17 15 14 37 37 H 1.08000 * 125.95701 * 359.93092 * 19 18 17 38 38 H 1.08001 * 125.52726 * 179.97438 * 21 20 19 39 39 H 1.08998 * 113.61859 * 334.56779 * 23 12 11 40 40 H 1.09001 * 113.61186 * 105.47183 * 23 12 11 41 41 H 1.07996 * 123.34871 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6353 2.5163 -0.0011 5 8 2.1590 3.2555 -1.1063 6 14 2.0772 3.3802 1.5892 7 16 3.8969 0.7895 -0.0071 8 6 3.5937 -0.9426 -0.0017 9 6 4.6232 -1.9860 -0.0048 10 8 4.3003 -3.1594 -0.0010 11 7 5.9274 -1.6459 -0.0116 12 6 6.9563 -2.6888 -0.0141 13 1 6.5974 -3.6365 -0.4157 14 6 8.2952 -2.2318 -0.6169 15 6 8.9821 -3.0265 0.5062 16 1 9.1779 -4.0673 0.2479 17 6 10.2045 -2.3210 1.0970 18 7 10.8553 -3.2033 2.0687 19 6 12.1427 -3.5903 2.0698 20 7 12.3301 -4.3744 3.1002 21 6 11.1909 -4.5105 3.7777 22 7 10.2598 -3.8076 3.1880 23 6 7.6969 -2.8267 1.3266 24 6 2.2447 -1.1600 0.0045 25 1 -0.3633 0.1022 1.0226 26 1 -0.3634 0.8343 -0.5999 27 1 -0.3633 -0.9368 -0.4227 28 1 0.5509 2.4499 -0.0894 29 1 1.8218 4.1596 -1.1698 30 1 1.5112 2.6384 2.7444 31 1 3.5532 3.4769 1.7215 32 1 6.1847 -0.7107 -0.0149 33 1 8.4845 -2.6313 -1.6132 34 1 8.4582 -1.1560 -0.5531 35 1 10.9059 -2.0798 0.2984 36 1 9.8895 -1.4032 1.5936 37 1 12.8915 -3.3044 1.3459 38 1 11.0590 -5.1026 4.6713 39 1 7.6963 -1.9135 1.9217 40 1 7.4031 -3.7064 1.8992 41 1 1.8021 -2.1451 0.0083 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:06 Heat of formation + Delta-G solvation = 84.521375 kcal Electronic energy + Delta-G solvation = -25312.428955 eV Core-core repulsion = 21516.560120 eV Total energy + Delta-G solvation = -3795.868836 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.97913 -41.31374 -40.11910 -39.24958 -37.62563 -35.52150 -34.10820 -32.50761 -32.11466 -30.02838 -29.28748 -26.94896 -26.90039 -24.82299 -23.81158 -22.88318 -22.42166 -21.74885 -21.00518 -19.96302 -19.14208 -18.57544 -18.38081 -17.56017 -17.18867 -16.85877 -16.30190 -16.17850 -16.03982 -15.84074 -15.67192 -15.16281 -15.06881 -14.80244 -14.57050 -14.37756 -14.28633 -13.87808 -13.65858 -13.42889 -13.31445 -13.20102 -13.00853 -12.97136 -12.67584 -12.36837 -12.25609 -12.06939 -11.88254 -11.55624 -11.09569 -10.91633 -10.77938 -10.72058 -10.62051 -10.18717 -9.73594 -9.48661 -5.22743 -0.68418 0.29172 0.69273 0.73328 0.98958 1.27666 1.31174 1.49908 1.83354 1.98798 2.07209 2.12496 3.05117 3.08303 3.24284 3.40344 3.42728 3.58073 3.63767 3.69161 3.82047 3.94620 3.98911 4.01338 4.08975 4.10654 4.29081 4.37797 4.39157 4.46778 4.54127 4.57281 4.59850 4.74849 4.79239 4.89818 4.98787 5.04208 5.18384 5.29862 5.30987 5.39641 5.50422 5.82447 6.30847 6.38668 7.06099 7.15993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.040 4.040 5 O -0.545 6.545 6 Si 0.679 3.321 7 S 0.221 5.779 8 C -0.269 4.269 9 C 0.595 3.405 10 O -0.523 6.523 11 N -0.717 5.717 12 C 0.123 3.877 13 H 0.120 0.880 14 C -0.137 4.137 15 C -0.118 4.118 16 H 0.102 0.898 17 C 0.140 3.860 18 N -0.379 5.379 19 C 0.252 3.748 20 N -0.547 5.547 21 C 0.197 3.803 22 N -0.312 5.312 23 C -0.135 4.135 24 C -0.045 4.045 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.388 0.612 30 H -0.250 1.250 31 H -0.244 1.244 32 H 0.398 0.602 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 7.781 -2.459 8.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C -0.309 4.309 4 C -0.152 4.152 5 O -0.352 6.352 6 Si 0.577 3.423 7 S 0.491 5.509 8 C -0.390 4.390 9 C 0.381 3.619 10 O -0.401 6.401 11 N -0.368 5.368 12 C 0.019 3.981 13 H 0.138 0.862 14 C -0.176 4.176 15 C -0.138 4.138 16 H 0.120 0.880 17 C 0.018 3.982 18 N -0.171 5.171 19 C -0.045 4.045 20 N -0.274 5.274 21 C -0.106 4.106 22 N -0.140 5.140 23 C -0.174 4.174 24 C -0.078 4.078 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.236 0.764 30 H -0.174 1.174 31 H -0.167 1.167 32 H 0.233 0.767 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.235 0.765 38 H 0.233 0.767 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.357 7.162 -1.507 7.328 hybrid contribution -1.170 -0.752 -0.499 1.478 sum -0.813 6.410 -2.006 6.766 Atomic orbital electron populations 1.20614 0.88829 1.03621 1.02757 1.18684 0.98311 0.90666 1.04097 1.23282 0.98853 0.98222 1.10555 1.24181 1.00274 0.89965 1.00735 1.86490 1.70909 1.29616 1.48214 0.95655 0.83224 0.88288 0.75089 1.82980 1.03393 0.97314 1.67214 1.24632 0.98190 0.97341 1.18824 1.16936 0.81676 0.87376 0.75886 1.90859 1.81576 1.18126 1.49491 1.45829 1.05288 1.09918 1.75772 1.22571 0.85494 0.92702 0.97382 0.86166 1.23396 0.94352 1.01002 0.98863 1.22621 0.93338 1.00681 0.97173 0.88004 1.21864 0.95392 0.91525 0.89395 1.50588 1.08410 1.37217 1.20842 1.26134 0.86894 0.93834 0.97618 1.70565 1.28158 1.20929 1.07716 1.26078 0.85982 0.98133 1.00429 1.78097 1.22224 1.14970 0.98690 1.23471 0.93904 1.03447 0.96595 1.20666 0.90899 0.99963 0.96229 0.90740 0.90872 0.90691 0.89339 0.76362 1.17448 1.16746 0.76713 0.89695 0.88959 0.87608 0.89088 0.76546 0.76720 0.89476 0.90210 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.09 9.57 36.01 0.34 0.43 16 2 C -0.10 -0.16 5.78 -106.45 -0.62 -0.78 16 3 C -0.19 -0.29 4.62 -35.86 -0.17 -0.45 16 4 C -0.04 0.04 2.80 36.01 0.10 0.14 16 5 O -0.55 0.63 12.83 -35.23 -0.45 0.18 16 6 Si 0.68 -1.18 32.60 -169.99 -5.54 -6.72 16 7 S 0.22 0.29 21.37 -107.50 -2.30 -2.01 16 8 C -0.27 -0.76 6.45 -36.79 -0.24 -1.00 16 9 C 0.59 2.21 7.78 -12.90 -0.10 2.11 16 10 O -0.52 -3.74 16.44 5.18 0.09 -3.66 16 11 N -0.72 -0.38 5.35 -54.35 -0.29 -0.67 16 12 C 0.12 -0.04 4.24 -67.12 -0.28 -0.32 16 13 H 0.12 0.18 7.46 -51.93 -0.39 -0.21 16 14 C -0.14 0.46 7.39 -25.92 -0.19 0.26 16 15 C -0.12 0.27 3.85 -89.81 -0.35 -0.07 16 16 H 0.10 -0.11 8.14 -51.93 -0.42 -0.54 16 17 C 0.14 -0.43 6.39 -4.04 -0.03 -0.46 16 18 N -0.38 -0.10 3.69 -62.63 -0.23 -0.34 16 19 C 0.25 0.02 12.63 -90.65 -1.14 -1.13 16 20 N -0.55 -1.70 11.19 -15.83 -0.18 -1.87 16 21 C 0.20 0.50 13.03 -91.81 -1.20 -0.69 16 22 N -0.31 -0.92 12.58 29.29 0.37 -0.55 16 23 C -0.14 0.05 7.43 -25.92 -0.19 -0.15 16 24 C -0.04 -0.12 9.78 -40.44 -0.40 -0.51 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.07 -0.13 6.82 -51.93 -0.35 -0.49 16 27 H 0.07 -0.10 8.10 -51.92 -0.42 -0.52 16 28 H 0.09 -0.25 6.09 -51.93 -0.32 -0.56 16 29 H 0.39 -2.42 8.74 45.56 0.40 -2.02 16 30 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 31 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 32 H 0.40 -0.63 7.84 -40.82 -0.32 -0.95 16 33 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 34 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 35 H 0.11 -0.63 8.09 -51.93 -0.42 -1.05 16 36 H 0.09 -0.31 7.85 -51.93 -0.41 -0.71 16 37 H 0.22 -0.96 8.06 -52.49 -0.42 -1.38 16 38 H 0.22 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 LS Contribution 365.72 15.07 5.51 5.51 Total: 0.00 -11.69 365.72 -12.69 -24.38 By element: Atomic # 1 Polarization: -6.42 SS G_CDS: -5.21 Total: -11.64 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.45 Total: -2.61 kcal Atomic # 7 Polarization: -3.10 SS G_CDS: -0.33 Total: -3.43 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.37 Total: -3.48 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.54 Total: -6.72 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.30 Total: -2.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -11.69 -12.69 -24.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.897 kcal (2) G-P(sol) polarization free energy of solvation -11.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds