Wall clock time and date at job start Sun Mar 7 2021 00:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33819 * 122.44431 * 2 1 4 4 C 1.50705 * 124.52575 * 359.94898 * 3 2 1 5 5 O 1.42902 * 109.46831 * 235.11547 * 4 3 2 6 6 Si 1.86296 * 109.47405 * 115.11430 * 4 3 2 7 7 S 1.70619 * 110.95491 * 180.25567 * 3 2 1 8 8 C 1.75839 * 91.55982 * 359.72727 * 7 3 2 9 9 C 1.46579 * 125.45517 * 179.97438 * 8 7 3 10 10 O 1.21709 * 119.99892 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00245 * 0.03083 * 9 8 7 12 12 C 1.46506 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.84652 * 23.80469 * 12 11 9 14 14 C 1.53781 * 113.61305 * 154.99702 * 12 11 9 15 15 C 1.53780 * 87.07934 * 139.98274 * 14 12 11 16 16 H 1.09002 * 113.61480 * 89.11814 * 15 14 12 17 17 C 1.52997 * 113.61401 * 219.93426 * 15 14 12 18 18 N 1.46502 * 109.46864 * 184.99867 * 17 15 14 19 19 C 1.34438 * 126.82230 * 125.00274 * 18 17 15 20 20 N 1.30830 * 108.07906 * 179.97438 * 19 18 17 21 21 C 1.33243 * 109.82873 * 359.97438 * 20 19 18 22 22 N 1.30715 * 108.94666 * 359.75732 * 21 20 19 23 23 C 1.53775 * 113.61378 * 252.49537 * 12 11 9 24 24 C 1.36649 * 109.08387 * 0.02562 * 8 7 3 25 25 H 1.09004 * 109.46834 * 275.70780 * 1 2 3 26 26 H 1.08995 * 109.47706 * 35.71737 * 1 2 3 27 27 H 1.09008 * 109.46547 * 155.71669 * 1 2 3 28 28 H 1.09004 * 109.46623 * 355.11281 * 4 3 2 29 29 H 0.96699 * 113.99641 * 179.97438 * 5 4 3 30 30 H 1.48500 * 109.99783 * 298.68240 * 6 4 3 31 31 H 1.48506 * 109.99737 * 59.99920 * 6 4 3 32 32 H 0.96998 * 120.00033 * 359.97438 * 11 9 8 33 33 H 1.09004 * 113.61370 * 254.52990 * 14 12 11 34 34 H 1.08996 * 113.61463 * 25.43904 * 14 12 11 35 35 H 1.08990 * 109.47300 * 304.99971 * 17 15 14 36 36 H 1.09005 * 109.46986 * 65.00603 * 17 15 14 37 37 H 1.08000 * 125.95701 * 359.93092 * 19 18 17 38 38 H 1.08001 * 125.52726 * 179.97438 * 21 20 19 39 39 H 1.08998 * 113.61859 * 334.56779 * 23 12 11 40 40 H 1.09001 * 113.61186 * 105.47183 * 23 12 11 41 41 H 1.07996 * 123.34871 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6353 2.5163 -0.0011 5 8 2.1590 3.2555 -1.1063 6 14 2.0772 3.3802 1.5892 7 16 3.8969 0.7895 -0.0071 8 6 3.5937 -0.9426 -0.0017 9 6 4.6232 -1.9860 -0.0048 10 8 4.3003 -3.1594 -0.0010 11 7 5.9274 -1.6459 -0.0116 12 6 6.9563 -2.6888 -0.0141 13 1 6.5974 -3.6365 -0.4157 14 6 8.2952 -2.2318 -0.6169 15 6 8.9821 -3.0265 0.5062 16 1 9.1779 -4.0673 0.2479 17 6 10.2045 -2.3210 1.0970 18 7 10.8553 -3.2033 2.0687 19 6 12.1427 -3.5903 2.0698 20 7 12.3301 -4.3744 3.1002 21 6 11.1909 -4.5105 3.7777 22 7 10.2598 -3.8076 3.1880 23 6 7.6969 -2.8267 1.3266 24 6 2.2447 -1.1600 0.0045 25 1 -0.3633 0.1022 1.0226 26 1 -0.3634 0.8343 -0.5999 27 1 -0.3633 -0.9368 -0.4227 28 1 0.5509 2.4499 -0.0894 29 1 1.8218 4.1596 -1.1698 30 1 1.5112 2.6384 2.7444 31 1 3.5532 3.4769 1.7215 32 1 6.1847 -0.7107 -0.0149 33 1 8.4845 -2.6313 -1.6132 34 1 8.4582 -1.1560 -0.5531 35 1 10.9059 -2.0798 0.2984 36 1 9.8895 -1.4032 1.5936 37 1 12.8915 -3.3044 1.3459 38 1 11.0590 -5.1026 4.6713 39 1 7.6963 -1.9135 1.9217 40 1 7.4031 -3.7064 1.8992 41 1 1.8021 -2.1451 0.0083 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:05 Heat of formation + Delta-G solvation = 84.165014 kcal Electronic energy + Delta-G solvation = -25312.444408 eV Core-core repulsion = 21516.560120 eV Total energy + Delta-G solvation = -3795.884289 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.99935 -41.43784 -40.15385 -39.34674 -37.53554 -35.59010 -34.20122 -32.56541 -32.17782 -29.98445 -29.23352 -26.98176 -26.80637 -24.82340 -23.85726 -22.87974 -22.44961 -21.90997 -20.94254 -19.99853 -19.25218 -18.50183 -18.30297 -17.59033 -17.27563 -16.81676 -16.43180 -16.29295 -16.03581 -15.88362 -15.65326 -15.21991 -15.06303 -14.78866 -14.51944 -14.40391 -14.29231 -13.79718 -13.55384 -13.39978 -13.29481 -13.21474 -13.04424 -12.94973 -12.66414 -12.36740 -12.26898 -12.00802 -11.93350 -11.51654 -11.34519 -11.00082 -10.81358 -10.72550 -10.60405 -10.31307 -9.80854 -9.55559 -5.11311 -0.83096 0.18359 0.62251 0.68936 0.96451 1.27459 1.43148 1.57724 1.88077 1.89676 1.91361 1.99664 3.17438 3.23791 3.34607 3.49438 3.52486 3.61258 3.67048 3.78126 3.88100 3.95765 4.09460 4.13381 4.14724 4.27099 4.33324 4.40756 4.52967 4.59244 4.62208 4.68924 4.71822 4.73813 4.87687 4.89181 4.96281 5.03285 5.17039 5.28079 5.30318 5.40188 5.43966 5.93565 6.19084 6.82195 6.86826 7.12005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.045 4.045 5 O -0.560 6.560 6 Si 0.768 3.232 7 S 0.238 5.762 8 C -0.289 4.289 9 C 0.590 3.410 10 O -0.570 6.570 11 N -0.703 5.703 12 C 0.111 3.889 13 H 0.096 0.904 14 C -0.114 4.114 15 C -0.108 4.108 16 H 0.088 0.912 17 C 0.135 3.865 18 N -0.380 5.380 19 C 0.257 3.743 20 N -0.585 5.585 21 C 0.184 3.816 22 N -0.346 5.346 23 C -0.137 4.137 24 C -0.056 4.056 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.410 0.590 30 H -0.292 1.292 31 H -0.281 1.281 32 H 0.410 0.590 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.261 0.739 38 H 0.229 0.771 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 10.270 -3.778 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 C -0.323 4.323 4 C -0.156 4.156 5 O -0.371 6.371 6 Si 0.671 3.329 7 S 0.507 5.493 8 C -0.410 4.410 9 C 0.377 3.623 10 O -0.451 6.451 11 N -0.353 5.353 12 C 0.007 3.993 13 H 0.114 0.886 14 C -0.152 4.152 15 C -0.128 4.128 16 H 0.107 0.893 17 C 0.014 3.986 18 N -0.170 5.170 19 C -0.038 4.038 20 N -0.313 5.313 21 C -0.119 4.119 22 N -0.174 5.174 23 C -0.176 4.176 24 C -0.090 4.090 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.262 0.738 30 H -0.219 1.219 31 H -0.207 1.207 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.116 0.884 37 H 0.276 0.724 38 H 0.245 0.755 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.882 9.717 -2.862 10.168 hybrid contribution -1.336 -1.476 -0.067 1.992 sum -0.453 8.241 -2.930 8.758 Atomic orbital electron populations 1.20694 0.87143 1.04416 1.03578 1.18907 0.99599 0.90170 1.03972 1.23766 0.98905 0.99687 1.09973 1.24320 1.01455 0.88645 1.01170 1.86443 1.71421 1.31400 1.47847 0.94746 0.79624 0.86215 0.72323 1.82788 1.03810 0.95690 1.66964 1.24647 0.98166 0.98233 1.19944 1.17192 0.82747 0.86974 0.75389 1.90823 1.82388 1.19905 1.52011 1.45777 1.04475 1.10811 1.74252 1.22671 0.86506 0.92017 0.98152 0.88571 1.23325 0.90840 1.02329 0.98723 1.22478 0.92931 1.00446 0.96907 0.89329 1.22207 0.95753 0.90792 0.89800 1.50769 1.08674 1.37143 1.20453 1.26934 0.87385 0.92297 0.97232 1.70544 1.28820 1.22706 1.09254 1.26434 0.86039 0.98391 1.01052 1.78020 1.23319 1.15934 1.00142 1.23447 0.95571 1.02192 0.96368 1.20840 0.91238 1.00450 0.96469 0.89929 0.89458 0.90441 0.87041 0.73756 1.21943 1.20741 0.75284 0.88565 0.86366 0.83514 0.88352 0.72377 0.75498 0.89131 0.93366 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.22 9.57 71.24 0.68 0.90 16 2 C -0.11 -0.40 5.78 -21.05 -0.12 -0.52 16 3 C -0.20 -0.58 4.62 24.68 0.11 -0.47 16 4 C -0.05 0.16 2.80 71.24 0.20 0.35 16 5 O -0.56 2.29 12.83 -148.98 -1.91 0.38 16 6 Si 0.77 -3.18 32.60 68.60 2.24 -0.94 16 7 S 0.24 0.70 21.37 -56.49 -1.21 -0.50 16 8 C -0.29 -2.13 6.45 24.08 0.16 -1.97 16 9 C 0.59 5.76 7.78 86.42 0.67 6.43 16 10 O -0.57 -10.14 16.44 -4.38 -0.07 -10.21 16 11 N -0.70 -1.60 5.35 -444.08 -2.38 -3.98 16 12 C 0.11 0.08 4.24 45.51 0.19 0.28 16 13 H 0.10 0.57 7.46 -2.39 -0.02 0.55 16 14 C -0.11 0.89 7.39 31.12 0.23 1.12 16 15 C -0.11 0.52 3.85 -10.27 -0.04 0.48 16 16 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 17 C 0.13 -1.06 6.39 86.38 0.55 -0.51 16 18 N -0.38 -0.02 3.69 -352.06 -1.30 -1.32 16 19 C 0.26 -0.22 12.63 180.36 2.28 2.06 16 20 N -0.59 -3.86 11.19 -203.99 -2.28 -6.14 16 21 C 0.18 1.19 13.03 180.76 2.36 3.55 16 22 N -0.35 -2.45 12.58 -61.24 -0.77 -3.22 16 23 C -0.14 -0.12 7.43 31.12 0.23 0.11 16 24 C -0.06 -0.39 9.78 21.72 0.21 -0.18 16 25 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.09 -0.44 6.82 -2.39 -0.02 -0.46 16 27 H 0.08 -0.21 8.10 -2.38 -0.02 -0.23 16 28 H 0.11 -0.88 6.09 -2.38 -0.01 -0.89 16 29 H 0.41 -6.07 8.74 -74.06 -0.65 -6.71 16 30 H -0.29 -0.84 7.11 99.48 0.71 -0.14 16 31 H -0.28 -0.55 7.11 99.48 0.71 0.15 16 32 H 0.41 -1.24 7.84 -92.71 -0.73 -1.96 16 33 H 0.10 -0.87 8.14 -2.38 -0.02 -0.89 16 34 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 35 H 0.15 -2.32 8.09 -2.39 -0.02 -2.34 16 36 H 0.10 -0.85 7.85 -2.38 -0.02 -0.87 16 37 H 0.26 -2.99 8.06 -2.91 -0.02 -3.02 16 38 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.09 0.00 7.90 -2.39 -0.02 -0.01 16 40 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 Total: 0.00 -31.28 365.72 -0.22 -31.50 By element: Atomic # 1 Polarization: -16.94 SS G_CDS: -0.25 Total: -17.19 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 7.71 Total: 11.62 kcal Atomic # 7 Polarization: -7.93 SS G_CDS: -6.73 Total: -14.66 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.98 Total: -9.83 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.24 Total: -0.94 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.21 Total: -0.50 kcal Total: -31.28 -0.22 -31.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.662 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds