Wall clock time and date at job start Sun Mar 7 2021 00:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.46990 * 2 1 4 4 C 1.50699 * 109.46786 * 119.99746 * 2 1 3 5 5 C 1.32769 * 124.71064 * 65.00648 * 4 2 1 6 6 C 1.44433 * 113.08125 * 180.02562 * 5 4 2 7 7 C 1.47185 * 123.45978 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.27366 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09004 * 112.85082 * 25.32902 * 10 9 7 12 12 C 1.53775 * 113.61738 * 156.53204 * 10 9 7 13 13 C 1.53787 * 87.08431 * 139.98100 * 12 10 9 14 14 H 1.09001 * 113.61172 * 89.19602 * 13 12 10 15 15 C 1.52992 * 113.61728 * 220.02029 * 13 12 10 16 16 N 1.46501 * 109.47006 * 184.99979 * 15 13 12 17 17 C 1.34430 * 126.82166 * 125.00343 * 16 15 13 18 18 N 1.30831 * 108.07928 * 179.97438 * 17 16 15 19 19 C 1.33244 * 109.82752 * 359.97438 * 18 17 16 20 20 N 1.30715 * 108.94291 * 359.75767 * 19 18 17 21 21 C 1.53791 * 113.61568 * 254.14162 * 10 9 7 22 22 C 1.36009 * 113.08003 * 0.26771 * 6 5 4 23 23 S 1.70447 * 110.81403 * 359.58679 * 22 6 5 24 24 H 0.96699 * 113.99996 * 59.99843 * 1 2 3 25 25 H 1.08989 * 109.47192 * 239.99855 * 2 1 3 26 26 H 1.48506 * 110.00306 * 59.99980 * 3 2 1 27 27 H 1.48498 * 110.00185 * 181.31770 * 3 2 1 28 28 H 1.07995 * 123.46038 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 30 30 H 1.08996 * 113.61556 * 254.52908 * 12 10 9 31 31 H 1.08995 * 113.61802 * 25.43168 * 12 10 9 32 32 H 1.09007 * 109.46872 * 304.99984 * 15 13 12 33 33 H 1.08998 * 109.47345 * 64.99435 * 15 13 12 34 34 H 1.08001 * 125.96111 * 359.97438 * 17 16 15 35 35 H 1.07998 * 125.52941 * 179.97438 * 19 18 17 36 36 H 1.09000 * 113.60843 * 334.56446 * 21 10 9 37 37 H 1.08997 * 113.61411 * 105.46561 * 21 10 9 38 38 H 1.08002 * 124.59458 * 179.70291 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7484 -2.0003 1.4864 6 6 2.3354 -2.4180 2.7382 7 6 2.2683 -3.7980 3.2455 8 8 1.6960 -4.6560 2.6004 9 7 2.8365 -4.1100 4.4271 10 6 2.7645 -5.4823 4.9349 11 1 2.6436 -6.2211 4.1426 12 6 3.8802 -5.8284 5.9350 13 6 2.8147 -6.5919 6.7392 14 1 2.7078 -7.6351 6.4418 15 6 2.9469 -6.4162 8.2532 16 7 1.9690 -7.2709 8.9312 17 6 2.2230 -8.1933 9.8755 18 7 1.0867 -8.7390 10.2260 19 6 0.0897 -8.1931 9.5308 20 7 0.5794 -7.2847 8.7285 21 6 1.7728 -5.6578 6.0972 22 6 2.9510 -1.4037 3.4031 23 16 2.8385 0.0526 2.5247 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5138 -0.8899 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7703 -0.0321 28 1 1.2149 -2.6684 0.8266 29 1 3.2931 -3.4259 4.9414 30 1 4.6562 -6.4705 5.5184 31 1 4.2829 -4.9607 6.4575 32 1 3.9529 -6.6969 8.5651 33 1 2.7626 -5.3745 8.5155 34 1 3.1953 -8.4408 10.2752 35 1 -0.9542 -8.4557 9.6187 36 1 1.5983 -4.7433 6.6641 37 1 0.8500 -6.1625 5.8113 38 1 3.4459 -1.5074 4.3575 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:09 Heat of formation + Delta-G solvation = 91.620910 kcal Electronic energy + Delta-G solvation = -23313.749934 eV Core-core repulsion = 19673.726576 eV Total energy + Delta-G solvation = -3640.023358 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97659 -41.34875 -39.87115 -38.56649 -37.15404 -35.51692 -34.09775 -32.11385 -31.88732 -29.18178 -26.99074 -26.90946 -26.10361 -24.08032 -22.88105 -22.45199 -21.77261 -21.10411 -20.28132 -18.81079 -18.51287 -18.29650 -18.12467 -17.18203 -16.86598 -16.29141 -16.13880 -16.02121 -15.76251 -15.58123 -15.16020 -14.90964 -14.67040 -14.35133 -13.96831 -13.87128 -13.84133 -13.70039 -13.62118 -13.17530 -12.95598 -12.68100 -12.40807 -12.27477 -12.09107 -12.04998 -11.53991 -10.93191 -10.89242 -10.71589 -10.61385 -10.51161 -10.13844 -10.00314 -9.54330 -5.33222 -0.40733 0.32950 0.67958 0.69673 0.87796 1.10512 1.31464 1.48915 1.79656 2.06498 2.08097 2.32670 3.08774 3.22897 3.26081 3.40676 3.44770 3.58524 3.61814 3.79416 3.83189 3.90534 3.97195 3.99430 4.10401 4.22771 4.31021 4.39332 4.47175 4.54828 4.60707 4.67594 4.79968 4.98612 5.01508 5.09466 5.18583 5.31634 5.45267 5.50864 5.82744 6.40604 6.49884 7.16367 7.18107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.197 4.197 5 C -0.049 4.049 6 C -0.154 4.154 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.717 5.717 10 C 0.124 3.876 11 H 0.118 0.882 12 C -0.136 4.136 13 C -0.119 4.119 14 H 0.101 0.899 15 C 0.141 3.859 16 N -0.379 5.379 17 C 0.252 3.748 18 N -0.547 5.547 19 C 0.197 3.803 20 N -0.312 5.312 21 C -0.135 4.135 22 C -0.203 4.203 23 S 0.176 5.824 24 H 0.385 0.615 25 H 0.085 0.915 26 H -0.234 1.234 27 H -0.239 1.239 28 H 0.159 0.841 29 H 0.399 0.601 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.218 0.782 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 4.866 -1.141 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.148 4.148 3 Si 0.570 3.430 4 C -0.313 4.313 5 C -0.078 4.078 6 C -0.173 4.173 7 C 0.366 3.634 8 O -0.406 6.406 9 N -0.367 5.367 10 C 0.019 3.981 11 H 0.136 0.864 12 C -0.175 4.175 13 C -0.139 4.139 14 H 0.119 0.881 15 C 0.019 3.981 16 N -0.171 5.171 17 C -0.045 4.045 18 N -0.274 5.274 19 C -0.106 4.106 20 N -0.139 5.139 21 C -0.174 4.174 22 C -0.341 4.341 23 S 0.442 5.558 24 H 0.233 0.767 25 H 0.103 0.897 26 H -0.157 1.157 27 H -0.162 1.162 28 H 0.176 0.824 29 H 0.234 0.766 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.233 0.767 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.575 6.240 -0.648 8.393 hybrid contribution 0.023 -1.678 0.343 1.713 sum 5.599 4.561 -0.305 7.228 Atomic orbital electron populations 1.86526 1.16734 1.81849 1.49805 1.23997 0.85974 1.09683 0.95141 0.94686 0.81858 0.78131 0.88365 1.23423 1.09176 0.97269 1.01453 1.21050 0.97294 0.94368 0.95104 1.20244 1.05632 0.94054 0.97353 1.17610 0.78183 0.86942 0.80630 1.90827 1.42603 1.49521 1.57648 1.45795 1.57874 1.11473 1.21607 1.22526 0.96398 0.83969 0.95217 0.86405 1.23373 0.96850 1.00643 0.96663 1.22656 0.98105 1.00740 0.92368 0.88065 1.21858 0.89764 0.94571 0.91955 1.50583 1.05931 1.30026 1.30524 1.26130 1.00074 0.88558 0.89764 1.70566 0.97947 1.29827 1.29019 1.26083 1.00630 0.92193 0.91719 1.78100 0.87696 1.23447 1.24687 1.23495 0.98253 0.99395 0.96224 1.25787 1.05167 0.98322 1.04841 1.83186 1.51143 1.10155 1.11335 0.76672 0.89711 1.15709 1.16234 0.82400 0.76624 0.89819 0.89056 0.87678 0.89126 0.76562 0.76705 0.89522 0.90271 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.86 -35.23 -0.45 -0.51 16 2 C -0.03 0.01 2.93 36.01 0.11 0.12 16 3 Si 0.67 -1.18 30.92 -169.99 -5.26 -6.44 16 4 C -0.20 -0.39 5.69 -36.18 -0.21 -0.59 16 5 C -0.05 -0.15 9.95 -39.02 -0.39 -0.54 16 6 C -0.15 -0.36 5.98 -104.63 -0.63 -0.98 16 7 C 0.58 1.92 7.79 -12.63 -0.10 1.82 16 8 O -0.53 -3.83 16.42 5.24 0.09 -3.74 16 9 N -0.72 0.24 5.33 -54.16 -0.29 -0.05 16 10 C 0.12 -0.08 4.21 -67.12 -0.28 -0.36 16 11 H 0.12 0.16 7.50 -51.93 -0.39 -0.23 16 12 C -0.14 0.51 7.39 -25.92 -0.19 0.32 16 13 C -0.12 0.29 3.86 -89.72 -0.35 -0.05 16 14 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 15 C 0.14 -0.45 6.39 -4.05 -0.03 -0.48 16 16 N -0.38 -0.09 3.69 -62.63 -0.23 -0.32 16 17 C 0.25 0.01 12.63 -90.65 -1.14 -1.14 16 18 N -0.55 -1.69 11.19 -15.83 -0.18 -1.86 16 19 C 0.20 0.51 13.03 -91.81 -1.20 -0.69 16 20 N -0.31 -0.92 12.57 29.29 0.37 -0.55 16 21 C -0.13 0.06 7.45 -25.82 -0.19 -0.13 16 22 C -0.20 0.02 10.38 29.93 0.31 0.33 16 23 S 0.18 0.13 20.20 -107.50 -2.17 -2.04 16 24 H 0.39 -1.98 8.74 45.56 0.40 -1.58 16 25 H 0.09 -0.18 7.96 -51.93 -0.41 -0.59 16 26 H -0.23 -0.24 7.11 56.52 0.40 0.17 16 27 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 28 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 29 H 0.40 -1.29 7.21 -40.82 -0.29 -1.59 16 30 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.09 -0.49 8.07 -51.93 -0.42 -0.91 16 32 H 0.11 -0.64 8.09 -51.92 -0.42 -1.06 16 33 H 0.09 -0.32 7.85 -51.93 -0.41 -0.73 16 34 H 0.22 -0.97 8.06 -52.49 -0.42 -1.39 16 35 H 0.22 -0.08 8.06 -52.49 -0.42 -0.50 16 36 H 0.09 -0.05 7.90 -51.93 -0.41 -0.46 16 37 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.17 -0.61 7.01 -52.49 -0.37 -0.98 16 LS Contribution 343.99 15.07 5.18 5.18 Total: 0.00 -11.96 343.99 -11.68 -23.64 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -4.46 Total: -10.93 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -4.28 Total: -2.38 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -0.33 Total: -2.78 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.37 Total: -4.25 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.26 Total: -6.44 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.17 Total: -2.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -11.96 -11.68 -23.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.260 kcal (2) G-P(sol) polarization free energy of solvation -11.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds