Wall clock time and date at job start Sun Mar 7 2021 00:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.46990 * 2 1 4 4 C 1.50699 * 109.46786 * 119.99746 * 2 1 3 5 5 C 1.32769 * 124.71064 * 65.00648 * 4 2 1 6 6 C 1.44433 * 113.08125 * 180.02562 * 5 4 2 7 7 C 1.47185 * 123.45978 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.27366 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09004 * 112.85082 * 25.32902 * 10 9 7 12 12 C 1.53775 * 113.61738 * 156.53204 * 10 9 7 13 13 C 1.53787 * 87.08431 * 139.98100 * 12 10 9 14 14 H 1.09001 * 113.61172 * 89.19602 * 13 12 10 15 15 C 1.52992 * 113.61728 * 220.02029 * 13 12 10 16 16 N 1.46501 * 109.47006 * 184.99979 * 15 13 12 17 17 C 1.34430 * 126.82166 * 125.00343 * 16 15 13 18 18 N 1.30831 * 108.07928 * 179.97438 * 17 16 15 19 19 C 1.33244 * 109.82752 * 359.97438 * 18 17 16 20 20 N 1.30715 * 108.94291 * 359.75767 * 19 18 17 21 21 C 1.53791 * 113.61568 * 254.14162 * 10 9 7 22 22 C 1.36009 * 113.08003 * 0.26771 * 6 5 4 23 23 S 1.70447 * 110.81403 * 359.58679 * 22 6 5 24 24 H 0.96699 * 113.99996 * 59.99843 * 1 2 3 25 25 H 1.08989 * 109.47192 * 239.99855 * 2 1 3 26 26 H 1.48506 * 110.00306 * 59.99980 * 3 2 1 27 27 H 1.48498 * 110.00185 * 181.31770 * 3 2 1 28 28 H 1.07995 * 123.46038 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 30 30 H 1.08996 * 113.61556 * 254.52908 * 12 10 9 31 31 H 1.08995 * 113.61802 * 25.43168 * 12 10 9 32 32 H 1.09007 * 109.46872 * 304.99984 * 15 13 12 33 33 H 1.08998 * 109.47345 * 64.99435 * 15 13 12 34 34 H 1.08001 * 125.96111 * 359.97438 * 17 16 15 35 35 H 1.07998 * 125.52941 * 179.97438 * 19 18 17 36 36 H 1.09000 * 113.60843 * 334.56446 * 21 10 9 37 37 H 1.08997 * 113.61411 * 105.46561 * 21 10 9 38 38 H 1.08002 * 124.59458 * 179.70291 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7484 -2.0003 1.4864 6 6 2.3354 -2.4180 2.7382 7 6 2.2683 -3.7980 3.2455 8 8 1.6960 -4.6560 2.6004 9 7 2.8365 -4.1100 4.4271 10 6 2.7645 -5.4823 4.9349 11 1 2.6436 -6.2211 4.1426 12 6 3.8802 -5.8284 5.9350 13 6 2.8147 -6.5919 6.7392 14 1 2.7078 -7.6351 6.4418 15 6 2.9469 -6.4162 8.2532 16 7 1.9690 -7.2709 8.9312 17 6 2.2230 -8.1933 9.8755 18 7 1.0867 -8.7390 10.2260 19 6 0.0897 -8.1931 9.5308 20 7 0.5794 -7.2847 8.7285 21 6 1.7728 -5.6578 6.0972 22 6 2.9510 -1.4037 3.4031 23 16 2.8385 0.0526 2.5247 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5138 -0.8899 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7703 -0.0321 28 1 1.2149 -2.6684 0.8266 29 1 3.2931 -3.4259 4.9414 30 1 4.6562 -6.4705 5.5184 31 1 4.2829 -4.9607 6.4575 32 1 3.9529 -6.6969 8.5651 33 1 2.7626 -5.3745 8.5155 34 1 3.1953 -8.4408 10.2752 35 1 -0.9542 -8.4557 9.6187 36 1 1.5983 -4.7433 6.6641 37 1 0.8500 -6.1625 5.8113 38 1 3.4459 -1.5074 4.3575 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:09 Heat of formation + Delta-G solvation = 89.773472 kcal Electronic energy + Delta-G solvation = -23313.830045 eV Core-core repulsion = 19673.726576 eV Total energy + Delta-G solvation = -3640.103469 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.98850 -41.44058 -39.88698 -38.62888 -37.21219 -35.55295 -34.15142 -32.17110 -31.92964 -29.10266 -27.02942 -26.78226 -26.16422 -24.08264 -22.87001 -22.46226 -21.87618 -21.06378 -20.32224 -18.81819 -18.46691 -18.28252 -18.22592 -17.18346 -16.80269 -16.30643 -16.25221 -16.11098 -15.78564 -15.60058 -15.13442 -14.94715 -14.58247 -14.34745 -14.00390 -13.95224 -13.79357 -13.71009 -13.50070 -13.18855 -12.90725 -12.69678 -12.46076 -12.23353 -12.10456 -11.96439 -11.45909 -11.13961 -10.98719 -10.80335 -10.58614 -10.47880 -10.23970 -10.05711 -9.62696 -5.20240 -0.48107 0.25977 0.59890 0.70049 0.70831 1.17920 1.45199 1.59058 1.87015 2.00048 2.02671 2.14101 3.27154 3.30657 3.39815 3.53111 3.59599 3.67232 3.71669 3.79696 3.90884 3.92576 4.10896 4.13977 4.18924 4.31166 4.39504 4.55424 4.58073 4.66301 4.67934 4.76261 4.87448 4.92989 5.00528 5.04252 5.11436 5.32606 5.44844 5.47572 5.95136 6.37751 6.82115 7.05491 7.13036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.052 4.052 3 Si 0.760 3.240 4 C -0.211 4.211 5 C -0.073 4.073 6 C -0.180 4.180 7 C 0.576 3.424 8 O -0.583 6.583 9 N -0.697 5.697 10 C 0.112 3.888 11 H 0.089 0.911 12 C -0.110 4.110 13 C -0.110 4.110 14 H 0.085 0.915 15 C 0.135 3.865 16 N -0.380 5.380 17 C 0.257 3.743 18 N -0.586 5.586 19 C 0.183 3.817 20 N -0.346 5.346 21 C -0.137 4.137 22 C -0.181 4.181 23 S 0.187 5.813 24 H 0.406 0.594 25 H 0.100 0.900 26 H -0.270 1.270 27 H -0.262 1.262 28 H 0.140 0.860 29 H 0.416 0.584 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.261 0.739 35 H 0.228 0.772 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 6.220 0.084 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.163 4.163 3 Si 0.661 3.339 4 C -0.327 4.327 5 C -0.102 4.102 6 C -0.197 4.197 7 C 0.363 3.637 8 O -0.464 6.464 9 N -0.348 5.348 10 C 0.008 3.992 11 H 0.107 0.893 12 C -0.149 4.149 13 C -0.130 4.130 14 H 0.103 0.897 15 C 0.015 3.985 16 N -0.170 5.170 17 C -0.039 4.039 18 N -0.314 5.314 19 C -0.120 4.120 20 N -0.174 5.174 21 C -0.176 4.176 22 C -0.319 4.319 23 S 0.453 5.547 24 H 0.257 0.743 25 H 0.117 0.883 26 H -0.196 1.196 27 H -0.187 1.187 28 H 0.158 0.842 29 H 0.254 0.746 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.164 0.836 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.245 0.755 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.025 7.604 0.574 11.071 hybrid contribution -0.736 -2.062 -0.037 2.190 sum 7.290 5.542 0.537 9.173 Atomic orbital electron populations 1.86472 1.17073 1.82555 1.51445 1.24348 0.85968 1.11183 0.94816 0.93571 0.79021 0.75085 0.86179 1.23803 1.09086 0.97195 1.02627 1.21075 0.98370 0.94899 0.95866 1.20182 1.07521 0.94186 0.97853 1.17873 0.77714 0.86926 0.81179 1.90794 1.45262 1.50992 1.59403 1.45671 1.56591 1.12129 1.20448 1.22574 0.98615 0.83192 0.94857 0.89265 1.23294 0.95530 1.01400 0.94630 1.22517 0.97566 0.99457 0.93436 0.89703 1.22218 0.90835 0.94799 0.90676 1.50778 1.05293 1.30335 1.30624 1.26931 1.00824 0.87345 0.88815 1.70542 0.99093 1.31337 1.30382 1.26431 1.01508 0.92290 0.91750 1.78021 0.89679 1.24205 1.25496 1.23476 0.97331 0.99958 0.96829 1.26150 1.03221 0.96984 1.05506 1.83175 1.50490 1.10197 1.10859 0.74259 0.88269 1.19597 1.18716 0.84209 0.74560 0.88810 0.85967 0.83559 0.88209 0.72369 0.75539 0.88953 0.93869 0.77338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.50 12.86 -148.98 -1.92 -2.42 16 2 C -0.05 0.01 2.93 71.24 0.21 0.22 16 3 Si 0.76 -2.91 30.92 68.60 2.12 -0.79 16 4 C -0.21 -1.03 5.69 24.51 0.14 -0.89 16 5 C -0.07 -0.61 9.95 22.67 0.23 -0.39 16 6 C -0.18 -1.03 5.98 -19.87 -0.12 -1.15 16 7 C 0.58 4.85 7.79 86.59 0.67 5.52 16 8 O -0.58 -10.56 16.42 -4.17 -0.07 -10.63 16 9 N -0.70 0.38 5.33 -443.51 -2.36 -1.99 16 10 C 0.11 -0.06 4.21 45.52 0.19 0.13 16 11 H 0.09 0.50 7.50 -2.38 -0.02 0.48 16 12 C -0.11 1.04 7.39 31.12 0.23 1.27 16 13 C -0.11 0.60 3.86 -10.21 -0.04 0.56 16 14 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 15 C 0.14 -1.16 6.39 86.38 0.55 -0.61 16 16 N -0.38 0.10 3.69 -352.07 -1.30 -1.19 16 17 C 0.26 -0.28 12.63 180.36 2.28 2.00 16 18 N -0.59 -3.80 11.19 -204.00 -2.28 -6.08 16 19 C 0.18 1.18 13.03 180.76 2.36 3.54 16 20 N -0.35 -2.41 12.57 -61.24 -0.77 -3.18 16 21 C -0.14 -0.03 7.45 31.18 0.23 0.20 16 22 C -0.18 0.19 10.38 67.30 0.70 0.89 16 23 S 0.19 0.21 20.20 -56.49 -1.14 -0.93 16 24 H 0.41 -4.12 8.74 -74.06 -0.65 -4.77 16 25 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 26 H -0.27 -0.59 7.11 99.48 0.71 0.12 16 27 H -0.26 0.02 7.11 99.48 0.71 0.72 16 28 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.42 -3.44 7.21 -92.71 -0.67 -4.11 16 30 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.12 -1.83 8.07 -2.39 -0.02 -1.85 16 32 H 0.15 -2.43 8.09 -2.38 -0.02 -2.45 16 33 H 0.10 -0.98 7.85 -2.39 -0.02 -1.00 16 34 H 0.26 -3.07 8.06 -2.91 -0.02 -3.09 16 35 H 0.23 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.09 -0.10 7.90 -2.39 -0.02 -0.12 16 37 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.21 -2.09 7.01 -2.91 -0.02 -2.11 16 Total: 0.00 -33.30 343.99 -0.26 -33.55 By element: Atomic # 1 Polarization: -17.47 SS G_CDS: -0.16 Total: -17.63 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 7.63 Total: 11.29 kcal Atomic # 7 Polarization: -5.72 SS G_CDS: -6.72 Total: -12.44 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.98 Total: -13.05 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.12 Total: -0.79 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.14 Total: -0.93 kcal Total: -33.30 -0.26 -33.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.328 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds