Wall clock time and date at job start Sun Mar 7 2021 00:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37942 * 120.07330 * 2 1 4 4 C 1.38377 * 120.14774 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.85590 * 179.97438 * 4 3 2 6 6 C 1.38341 * 120.29209 * 0.27024 * 4 3 2 7 7 C 1.50696 * 119.92868 * 179.74537 * 6 4 3 8 8 O 1.42893 * 109.47605 * 285.00254 * 7 6 4 9 9 Si 1.86304 * 109.47172 * 164.99982 * 7 6 4 10 10 C 1.37979 * 120.14291 * 359.49186 * 6 4 3 11 11 C 1.39560 * 119.85267 * 0.48820 * 10 6 4 12 12 C 1.47849 * 120.14434 * 179.74577 * 11 10 6 13 13 O 1.21560 * 119.99806 * 186.25087 * 12 11 10 14 14 N 1.34769 * 120.00149 * 6.25137 * 12 11 10 15 15 C 1.46499 * 120.00399 * 180.02562 * 14 12 11 16 16 H 1.09006 * 112.84375 * 336.19430 * 15 14 12 17 17 C 1.53775 * 113.61956 * 107.49616 * 15 14 12 18 18 C 1.53778 * 87.08313 * 139.98139 * 17 15 14 19 19 H 1.09004 * 113.60868 * 89.11881 * 18 17 15 20 20 C 1.52998 * 113.69421 * 220.00874 * 18 17 15 21 21 N 1.46499 * 109.47220 * 272.53683 * 20 18 17 22 22 C 1.34426 * 126.82324 * 124.71157 * 21 20 18 23 23 N 1.30836 * 108.07774 * 179.89436 * 22 21 20 24 24 C 1.33234 * 109.82896 * 0.38157 * 23 22 21 25 25 N 1.30712 * 108.94757 * 359.75915 * 24 23 22 26 26 C 1.53775 * 113.61851 * 205.00092 * 15 14 12 27 27 H 1.08999 * 109.46763 * 96.58774 * 1 2 3 28 28 H 1.08993 * 109.47107 * 216.58724 * 1 2 3 29 29 H 1.08998 * 109.47203 * 336.58771 * 1 2 3 30 30 H 1.07998 * 119.92364 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.47121 * 89.99557 * 5 4 3 32 32 H 1.08997 * 109.47374 * 209.99728 * 5 4 3 33 33 H 1.09004 * 109.47410 * 330.00052 * 5 4 3 34 34 H 1.09000 * 109.46805 * 45.00540 * 7 6 4 35 35 H 0.96706 * 113.99685 * 300.00585 * 8 7 6 36 36 H 1.48497 * 110.00022 * 179.97438 * 9 7 6 37 37 H 1.48499 * 109.99938 * 301.32464 * 9 7 6 38 38 H 1.08000 * 120.07617 * 180.23030 * 10 6 4 39 39 H 0.97006 * 120.00320 * 359.97438 * 14 12 11 40 40 H 1.09000 * 113.61978 * 254.53314 * 17 15 14 41 41 H 1.09003 * 113.61207 * 25.43624 * 17 15 14 42 42 H 1.09002 * 109.47090 * 32.53849 * 20 18 17 43 43 H 1.08998 * 109.46696 * 152.53744 * 20 18 17 44 44 H 1.08003 * 125.96040 * 0.03702 * 22 21 20 45 45 H 1.08002 * 125.52948 * 179.80105 * 24 23 22 46 46 H 1.09000 * 113.61329 * 334.56267 * 26 15 14 47 47 H 1.08992 * 113.62152 * 105.46334 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5820 1.1955 -0.0005 5 6 4.3305 2.5035 -0.0011 6 6 4.2814 0.0019 -0.0067 7 6 5.7883 0.0135 -0.0130 8 8 6.2565 0.3693 -1.3153 9 14 6.4242 -1.6796 0.4343 10 6 3.6022 -1.1991 -0.0018 11 6 2.2066 -1.2080 -0.0009 12 6 1.4723 -2.4912 -0.0013 13 8 0.2620 -2.4989 -0.1151 14 7 2.1446 -3.6524 0.1245 15 6 1.4171 -4.9240 0.1236 16 1 0.3757 -4.8159 0.4269 17 6 1.6033 -5.7393 -1.1669 18 6 1.6788 -6.9886 -0.2734 19 1 0.7085 -7.4460 -0.0796 20 6 2.7344 -8.0017 -0.7208 21 7 2.1488 -8.9143 -1.7059 22 6 2.6087 -9.1666 -2.9437 23 7 1.8092 -10.0376 -3.5040 24 6 0.8275 -10.3572 -2.6619 25 7 0.9921 -9.6949 -1.5471 26 6 2.1568 -6.0576 0.8533 27 1 -0.3633 -0.1179 -1.0209 28 1 -0.3633 -0.8251 0.6125 29 1 -0.3633 0.9430 0.4083 30 1 1.6582 2.1290 0.0004 31 1 4.5113 2.8191 1.0264 32 1 5.2832 2.3767 -0.5152 33 1 3.7384 3.2608 -0.5149 34 1 6.1491 0.7409 0.7141 35 1 5.9728 -0.2358 -2.0143 36 1 7.9091 -1.6816 0.4310 37 1 5.9181 -2.0747 1.7734 38 1 4.1493 -2.1303 -0.0029 39 1 3.1104 -3.6464 0.2150 40 1 0.7329 -5.7236 -1.8228 41 1 2.5336 -5.5207 -1.6911 42 1 3.5766 -7.4747 -1.1692 43 1 3.0799 -8.5713 0.1419 44 1 3.4863 -8.7286 -3.3957 45 1 0.0260 -11.0515 -2.8668 46 1 3.2385 -5.9259 0.8814 47 1 1.7334 -6.2987 1.8282 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:17 Heat of formation + Delta-G solvation = 79.146200 kcal Electronic energy + Delta-G solvation = -29412.091172 eV Core-core repulsion = 25371.299386 eV Total energy + Delta-G solvation = -4040.791786 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.93984 -41.77204 -40.59485 -39.37863 -37.58325 -35.59423 -34.41166 -34.30898 -32.99557 -32.12046 -29.60115 -28.96569 -28.32018 -26.69967 -25.66030 -24.61609 -23.63284 -22.90477 -22.75123 -21.77365 -21.27987 -20.37410 -18.96298 -18.34940 -17.56555 -17.51006 -16.84493 -16.54745 -16.38393 -16.24224 -16.22141 -15.98787 -15.70703 -15.48509 -15.04991 -14.89051 -14.76241 -14.56250 -14.40997 -14.08475 -13.91882 -13.70728 -13.43690 -13.36818 -13.15537 -13.07021 -12.85504 -12.64842 -12.59225 -12.49537 -12.30449 -12.12128 -11.86992 -11.81577 -11.47545 -10.93954 -10.77188 -10.71150 -10.46024 -10.39568 -10.12617 -9.89826 -9.60276 -5.04486 -0.25980 0.16936 0.75096 1.31136 1.50758 1.65182 1.74779 2.01115 2.05308 2.10054 2.64079 3.41305 3.45981 3.50274 3.52582 3.56055 3.58636 3.63356 3.73761 3.79989 3.83122 3.94686 4.14195 4.19834 4.21594 4.24907 4.44027 4.48092 4.50521 4.55761 4.57206 4.66480 4.72301 4.74879 4.77369 4.78789 4.84035 4.90350 4.97382 5.03355 5.07018 5.14458 5.20477 5.28285 5.35850 5.47724 5.49365 5.49739 5.59447 5.79357 6.01418 6.49647 6.79226 7.17861 7.18048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.139 4.139 4 C -0.033 4.033 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.075 4.075 8 O -0.551 6.551 9 Si 0.772 3.228 10 C -0.061 4.061 11 C -0.158 4.158 12 C 0.556 3.444 13 O -0.567 6.567 14 N -0.701 5.701 15 C 0.117 3.883 16 H 0.087 0.913 17 C -0.140 4.140 18 C -0.116 4.116 19 H 0.078 0.922 20 C 0.135 3.865 21 N -0.377 5.377 22 C 0.258 3.742 23 N -0.587 5.587 24 C 0.185 3.815 25 N -0.352 5.352 26 C -0.119 4.119 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.395 0.605 36 H -0.298 1.298 37 H -0.276 1.276 38 H 0.158 0.842 39 H 0.416 0.584 40 H 0.044 0.956 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.100 0.900 44 H 0.261 0.739 45 H 0.229 0.771 46 H 0.128 0.872 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 0.691 0.539 7.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.029 4.029 3 C -0.157 4.157 4 C -0.034 4.034 5 C -0.184 4.184 6 C -0.139 4.139 7 C -0.185 4.185 8 O -0.359 6.359 9 Si 0.677 3.323 10 C -0.078 4.078 11 C -0.161 4.161 12 C 0.346 3.654 13 O -0.448 6.448 14 N -0.353 5.353 15 C 0.012 3.988 16 H 0.105 0.895 17 C -0.178 4.178 18 C -0.136 4.136 19 H 0.096 0.904 20 C 0.015 3.985 21 N -0.167 5.167 22 C -0.038 4.038 23 N -0.315 5.315 24 C -0.118 4.118 25 N -0.181 5.181 26 C -0.157 4.157 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.245 0.755 36 H -0.225 1.225 37 H -0.202 1.202 38 H 0.175 0.825 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.135 0.865 42 H 0.166 0.834 43 H 0.118 0.882 44 H 0.277 0.723 45 H 0.245 0.755 46 H 0.146 0.854 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.461 0.552 1.718 6.709 hybrid contribution -0.254 0.815 0.237 0.886 sum 6.207 1.368 1.955 6.650 Atomic orbital electron populations 1.21010 0.90391 1.03046 1.03011 1.20213 0.96835 0.92175 0.93665 1.21169 0.93775 0.97958 1.02751 1.20231 0.93402 0.96059 0.93679 1.21004 1.00989 0.93203 1.03169 1.20218 0.96676 0.92756 1.04292 1.25227 0.90984 1.12984 0.89265 1.86482 1.76033 1.56913 1.16487 0.94190 0.77476 0.77918 0.82766 1.21186 0.92138 0.97966 0.96558 1.19687 0.93920 0.92708 1.09761 1.18477 0.86755 0.84594 0.75621 1.90750 1.15459 1.87604 1.50953 1.45761 1.11335 1.04649 1.73536 1.22432 0.97220 0.81309 0.97835 0.89494 1.23585 1.03324 0.94410 0.96523 1.22516 0.99494 0.93734 0.97888 0.90398 1.22255 0.95667 0.89042 0.91582 1.50752 1.19232 1.32968 1.13794 1.26913 0.99840 0.93858 0.83203 1.70536 1.07595 1.18960 1.34431 1.26405 0.98734 0.99424 0.87225 1.77954 1.03972 1.11567 1.24584 1.23355 1.02942 0.91840 0.97605 0.91260 0.90458 0.91078 0.84118 0.90204 0.90063 0.90553 0.87510 0.75491 1.22541 1.20218 0.82473 0.74557 0.93712 0.86455 0.83442 0.88187 0.72327 0.75506 0.85385 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 8.73 71.24 0.62 0.06 16 2 C -0.03 -0.09 5.91 -19.61 -0.12 -0.21 16 3 C -0.14 -0.13 9.31 22.23 0.21 0.08 16 4 C -0.03 0.02 5.89 -19.81 -0.12 -0.10 16 5 C -0.13 0.31 9.32 71.23 0.66 0.98 16 6 C -0.14 0.42 5.26 -19.90 -0.10 0.31 16 7 C -0.08 0.36 1.88 71.23 0.13 0.49 16 8 O -0.55 2.31 11.92 -148.98 -1.78 0.54 16 9 Si 0.77 -6.09 29.91 68.60 2.05 -4.04 16 10 C -0.06 0.29 8.13 22.53 0.18 0.47 16 11 C -0.16 -0.17 5.87 -20.09 -0.12 -0.28 16 12 C 0.56 1.61 7.70 86.79 0.67 2.28 16 13 O -0.57 -6.26 12.95 -3.90 -0.05 -6.31 16 14 N -0.70 3.63 5.30 -442.92 -2.35 1.28 16 15 C 0.12 -0.51 4.24 45.51 0.19 -0.32 16 16 H 0.09 0.22 7.46 -2.38 -0.02 0.21 16 17 C -0.14 0.87 7.43 31.12 0.23 1.10 16 18 C -0.12 0.83 3.87 -10.27 -0.04 0.79 16 19 H 0.08 -0.01 8.00 -2.38 -0.02 -0.03 16 20 C 0.13 -1.38 6.39 86.38 0.55 -0.83 16 21 N -0.38 0.65 3.69 -352.06 -1.30 -0.65 16 22 C 0.26 -0.64 12.63 180.36 2.28 1.64 16 23 N -0.59 -3.13 11.19 -204.00 -2.28 -5.41 16 24 C 0.18 0.97 13.03 180.77 2.36 3.33 16 25 N -0.35 -2.02 12.45 -61.25 -0.76 -2.79 16 26 C -0.12 1.25 7.39 31.12 0.23 1.48 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.68 5.86 -2.39 -0.01 0.66 16 29 H 0.07 0.11 8.04 -2.39 -0.02 0.09 16 30 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.08 -0.11 6.17 -2.39 -0.01 -0.12 16 33 H 0.08 -0.27 8.08 -2.39 -0.02 -0.28 16 34 H 0.11 -0.35 7.37 -2.39 -0.02 -0.37 16 35 H 0.40 -4.76 8.70 -74.05 -0.64 -5.40 16 36 H -0.30 -0.09 7.11 99.48 0.71 0.62 16 37 H -0.28 1.04 7.11 99.48 0.71 1.75 16 38 H 0.16 -1.97 3.51 -2.91 -0.01 -1.98 16 39 H 0.42 -5.26 6.80 -92.70 -0.63 -5.89 16 40 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.12 -1.39 7.90 -2.39 -0.02 -1.41 16 42 H 0.15 -2.80 7.79 -2.39 -0.02 -2.81 16 43 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 44 H 0.26 -3.48 8.06 -2.91 -0.02 -3.50 16 45 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 46 H 0.13 -2.22 8.08 -2.39 -0.02 -2.24 16 47 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: 0.00 -30.03 383.26 1.14 -28.89 By element: Atomic # 1 Polarization: -22.56 SS G_CDS: -0.22 Total: -22.78 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.82 Total: 11.27 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -6.69 Total: -7.57 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -1.83 Total: -5.77 kcal Atomic # 14 Polarization: -6.09 SS G_CDS: 2.05 Total: -4.04 kcal Total: -30.03 1.14 -28.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.035 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds