Wall clock time and date at job start Sun Mar 7 2021 00:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36771 * 125.79711 * 2 1 4 4 C 1.47262 * 126.94491 * 0.02714 * 3 2 1 5 5 O 1.21627 * 119.99828 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00310 * 180.02562 * 4 3 2 7 7 C 1.46490 * 120.00071 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.85394 * 23.79887 * 7 6 4 9 9 C 1.53784 * 113.61427 * 154.99934 * 7 6 4 10 10 C 1.53776 * 87.08333 * 139.97986 * 9 7 6 11 11 H 1.09003 * 113.61805 * 89.19956 * 10 9 7 12 12 C 1.53002 * 113.61417 * 220.01648 * 10 9 7 13 13 N 1.46506 * 109.47035 * 184.99705 * 12 10 9 14 14 C 1.34430 * 126.81822 * 125.00083 * 13 12 10 15 15 N 1.30838 * 108.07288 * 179.97438 * 14 13 12 16 16 C 1.33237 * 109.82947 * 0.02562 * 15 14 13 17 17 N 1.30717 * 108.94685 * 359.74624 * 16 15 14 18 18 C 1.53779 * 87.08338 * 334.56558 * 10 9 7 19 19 C 1.46694 * 106.11280 * 180.28275 * 3 2 1 20 20 C 1.34480 * 106.33287 * 359.56977 * 19 3 2 21 21 C 1.50703 * 125.57163 * 180.14409 * 20 19 3 22 22 O 1.42896 * 109.47061 * 65.31440 * 21 20 19 23 23 Si 1.86303 * 109.47051 * 185.31317 * 21 20 19 24 24 N 1.34654 * 125.80742 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47320 * 90.00077 * 1 2 3 26 26 H 1.09004 * 109.46677 * 209.99664 * 1 2 3 27 27 H 1.09001 * 109.47443 * 329.99351 * 1 2 3 28 28 H 0.97008 * 119.99839 * 359.97438 * 6 4 3 29 29 H 1.09001 * 113.61609 * 25.42762 * 9 7 6 30 30 H 1.09002 * 113.68788 * 254.54117 * 9 7 6 31 31 H 1.09004 * 109.46930 * 64.99935 * 12 10 9 32 32 H 1.09000 * 109.47312 * 304.99879 * 12 10 9 33 33 H 1.07995 * 125.96429 * 0.02562 * 14 13 12 34 34 H 1.08000 * 125.52658 * 180.02562 * 16 15 14 35 35 H 1.08993 * 113.61704 * 139.97781 * 18 10 9 36 36 H 1.08991 * 113.61544 * 270.88955 * 18 10 9 37 37 H 1.08006 * 126.83171 * 179.73650 * 19 3 2 38 38 H 1.08998 * 109.46896 * 305.30783 * 21 20 19 39 39 H 0.96696 * 114.00400 * 60.00138 * 22 21 20 40 40 H 1.48499 * 109.99861 * 58.68096 * 23 21 20 41 41 H 1.48500 * 109.99958 * 180.02562 * 23 21 20 42 42 H 0.97002 * 124.84853 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 0.0006 5 8 0.6837 2.7839 0.0006 6 7 2.7848 3.5055 0.0000 7 6 2.3501 4.9045 -0.0001 8 1 1.3471 5.0361 0.4057 9 6 3.3871 5.8718 0.5948 10 6 3.0049 6.8486 -0.5296 11 1 2.1815 7.5137 -0.2692 12 6 4.2009 7.5906 -1.1297 13 7 3.7252 8.5776 -2.1024 14 6 3.9923 9.8951 -2.1096 15 7 3.3840 10.4269 -3.1386 16 6 2.7213 9.4849 -3.8084 17 7 2.9040 8.3344 -3.2153 18 6 2.5715 5.6184 -1.3441 19 6 3.6882 0.6152 -0.0070 20 6 3.6096 -0.7273 -0.0008 21 6 4.7821 -1.6741 -0.0014 22 8 5.5110 -1.5303 1.2191 23 14 4.1658 -3.4256 -0.1540 24 7 2.2948 -1.0920 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.7310 3.2916 -0.0005 29 1 4.4125 5.5081 0.5275 30 1 3.1300 6.2309 1.5913 31 1 4.8583 6.8777 -1.6273 32 1 4.7493 8.0979 -0.3360 33 1 4.6031 10.4223 -1.3918 34 1 2.1327 9.6450 -4.6997 35 1 1.6546 5.7722 -1.9129 36 1 3.3738 5.1854 -1.9414 37 1 4.5890 1.2111 -0.0128 38 1 5.4345 -1.4438 -0.8437 39 1 4.9915 -1.7200 2.0123 40 1 3.3790 -3.5800 -1.4039 41 1 5.3124 -4.3692 -0.1552 42 1 1.9735 -2.0073 -0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_9865296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:25 Heat of formation + Delta-G solvation = 95.454749 kcal Electronic energy + Delta-G solvation = -25716.527415 eV Core-core repulsion = 21894.780670 eV Total energy + Delta-G solvation = -3821.746746 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.96658 -42.49444 -40.90524 -39.25546 -37.71695 -35.41327 -34.03319 -32.80699 -32.15225 -32.02998 -29.16354 -28.78808 -26.70776 -25.90819 -24.56830 -23.20712 -22.84764 -22.07940 -21.46534 -21.21899 -20.17533 -18.67660 -18.32064 -17.75608 -17.21857 -16.93215 -16.68556 -16.51716 -16.11297 -15.87557 -15.65070 -15.37281 -15.12090 -14.95573 -14.65345 -14.47784 -14.39264 -14.10302 -13.88155 -13.61027 -13.43748 -13.38265 -13.13360 -12.84455 -12.67720 -12.55745 -12.25998 -12.18231 -11.88436 -11.38074 -10.98750 -10.93492 -10.77990 -10.56167 -10.47439 -10.11211 -9.80088 -9.17159 -5.16141 0.68077 0.72307 1.14250 1.23882 1.47358 1.50706 1.84160 2.02250 2.03582 2.43618 2.50182 3.32752 3.43699 3.47875 3.55028 3.66218 3.71787 3.79562 3.86875 3.96573 4.06008 4.13361 4.22237 4.23848 4.36023 4.44563 4.50023 4.58475 4.69306 4.72657 4.73164 4.77944 4.82265 4.99595 5.03603 5.06105 5.17669 5.28862 5.37536 5.47272 5.62386 5.68514 5.85254 5.97055 6.41862 6.66019 6.72073 7.15059 7.34870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.117 3.883 3 C -0.266 4.266 4 C 0.585 3.415 5 O -0.590 6.590 6 N -0.705 5.705 7 C 0.116 3.884 8 H 0.090 0.910 9 C -0.113 4.113 10 C -0.110 4.110 11 H 0.085 0.915 12 C 0.135 3.865 13 N -0.379 5.379 14 C 0.256 3.744 15 N -0.586 5.586 16 C 0.183 3.817 17 N -0.345 5.345 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.024 4.024 21 C -0.036 4.036 22 O -0.548 6.548 23 Si 0.764 3.236 24 N -0.533 5.533 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.413 0.587 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.260 0.740 34 H 0.229 0.771 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.396 0.604 40 H -0.280 1.280 41 H -0.290 1.290 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -3.908 5.781 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.003 4.003 3 C -0.276 4.276 4 C 0.376 3.624 5 O -0.472 6.472 6 N -0.355 5.355 7 C 0.011 3.989 8 H 0.108 0.892 9 C -0.152 4.152 10 C -0.129 4.129 11 H 0.103 0.897 12 C 0.015 3.985 13 N -0.170 5.170 14 C -0.040 4.040 15 N -0.314 5.314 16 C -0.120 4.120 17 N -0.173 5.173 18 C -0.175 4.175 19 C -0.161 4.161 20 C -0.132 4.132 21 C -0.147 4.147 22 O -0.355 6.355 23 Si 0.669 3.331 24 N -0.134 5.134 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.250 0.750 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.276 0.724 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.176 0.824 38 H 0.141 0.859 39 H 0.247 0.753 40 H -0.207 1.207 41 H -0.217 1.217 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.610 -4.849 4.646 7.624 hybrid contribution 0.312 0.134 -0.576 0.669 sum 3.923 -4.715 4.070 7.361 Atomic orbital electron populations 1.20610 0.86196 1.04808 1.03813 1.20555 0.94267 0.85696 0.99749 1.20211 0.94268 0.91693 1.21414 1.17703 0.85092 0.85166 0.74457 1.90726 1.18327 1.85054 1.53141 1.45636 1.09944 1.05108 1.74783 1.22460 0.99655 0.79456 0.97324 0.89195 1.23291 1.00148 0.93403 0.98338 1.22486 0.97996 0.95257 0.97197 0.89661 1.22218 0.95911 0.90783 0.89636 1.50778 1.36717 1.08757 1.20713 1.26924 0.97289 0.82574 0.97169 1.70540 1.16584 1.34787 1.09446 1.26434 0.98899 0.85613 1.01059 1.78023 1.14603 1.24380 1.00342 1.23419 1.01418 0.95992 0.96624 1.21971 0.95323 0.93236 1.05598 1.20699 0.84735 0.95667 1.12136 1.24561 0.92125 1.07167 0.90871 1.86514 1.40437 1.92889 1.15657 0.94352 0.81603 0.72606 0.84576 1.41671 1.05181 1.08733 1.57799 0.90272 0.88682 0.90031 0.75043 0.86506 0.89033 0.88388 0.83689 0.72419 0.75492 0.93827 0.89342 0.82382 0.85937 0.75347 1.20714 1.21697 0.73178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 9.88 71.23 0.70 0.66 16 2 C 0.12 0.22 7.17 41.78 0.30 0.52 16 3 C -0.27 -1.20 6.29 -19.04 -0.12 -1.32 16 4 C 0.59 4.69 7.81 86.62 0.68 5.37 16 5 O -0.59 -9.04 14.41 -4.12 -0.06 -9.10 16 6 N -0.70 -0.83 5.35 -443.45 -2.37 -3.20 16 7 C 0.12 0.07 4.24 45.52 0.19 0.26 16 8 H 0.09 0.56 7.46 -2.39 -0.02 0.54 16 9 C -0.11 0.86 7.39 31.12 0.23 1.09 16 10 C -0.11 0.48 3.86 -10.27 -0.04 0.44 16 11 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 12 C 0.13 -1.00 6.39 86.38 0.55 -0.44 16 13 N -0.38 -0.17 3.69 -352.04 -1.30 -1.47 16 14 C 0.26 -0.13 12.63 180.36 2.28 2.15 16 15 N -0.59 -4.01 11.19 -204.00 -2.28 -6.29 16 16 C 0.18 1.23 13.03 180.76 2.36 3.58 16 17 N -0.35 -2.55 12.57 -61.25 -0.77 -3.32 16 18 C -0.14 -0.16 7.43 31.12 0.23 0.07 16 19 C -0.14 -0.02 10.45 23.62 0.25 0.23 16 20 C -0.02 0.06 6.09 40.98 0.25 0.31 16 21 C -0.04 0.17 2.98 71.24 0.21 0.38 16 22 O -0.55 2.17 12.88 -148.98 -1.92 0.25 16 23 Si 0.76 -4.95 30.96 68.60 2.12 -2.82 16 24 N -0.53 1.86 5.41 -171.08 -0.93 0.93 16 25 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.09 -0.54 8.14 -2.38 -0.02 -0.56 16 27 H 0.08 0.47 6.47 -2.39 -0.02 0.45 16 28 H 0.41 -1.80 7.85 -92.70 -0.73 -2.53 16 29 H 0.12 -1.43 8.08 -2.39 -0.02 -1.45 16 30 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.10 -0.80 7.84 -2.38 -0.02 -0.82 16 32 H 0.15 -2.21 8.09 -2.39 -0.02 -2.23 16 33 H 0.26 -2.89 8.06 -2.91 -0.02 -2.92 16 34 H 0.23 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.09 0.04 7.90 -2.39 -0.02 0.02 16 37 H 0.16 -0.54 7.70 -2.91 -0.02 -0.57 16 38 H 0.12 -0.49 7.96 -2.39 -0.02 -0.51 16 39 H 0.40 -4.56 8.70 -74.06 -0.64 -5.20 16 40 H -0.28 0.43 7.11 99.48 0.71 1.14 16 41 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 42 H 0.43 -3.97 6.72 -92.71 -0.62 -4.59 16 Total: 0.00 -30.64 357.90 -0.31 -30.95 By element: Atomic # 1 Polarization: -18.33 SS G_CDS: -0.88 Total: -19.21 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 8.07 Total: 13.30 kcal Atomic # 7 Polarization: -5.71 SS G_CDS: -7.65 Total: -13.36 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.98 Total: -8.86 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: 2.12 Total: -2.82 kcal Total: -30.64 -0.31 -30.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_9865296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.407 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds